Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06675 and BWI76_RS06680 are separated by 166 nucleotides BWI76_RS06680 and BWI76_RS06685 are separated by 2 nucleotides BWI76_RS06685 and BWI76_RS06690 are separated by 243 nucleotides
BWI76_RS06675: BWI76_RS06675 - nickel/cobalt efflux protein RcnA, at 1,399,250 to 1,400,083
_RS06675
BWI76_RS06680: BWI76_RS06680 - hypothetical protein, at 1,400,250 to 1,400,522
_RS06680
BWI76_RS06685: BWI76_RS06685 - cyclic diguanylate phosphodiesterase (EAL) domain-containing protein, at 1,400,525 to 1,402,111
_RS06685
BWI76_RS06690: BWI76_RS06690 - ABC transporter ATP-binding protein, at 1,402,355 to 1,403,464
_RS06690
Position (kb)
1400
1401
1402
1403 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1399.554 kb on + strand, within BWI76_RS06675 at 1399.554 kb on + strand, within BWI76_RS06675 at 1399.554 kb on + strand, within BWI76_RS06675 at 1399.562 kb on - strand, within BWI76_RS06675 at 1399.640 kb on + strand, within BWI76_RS06675 at 1399.808 kb on - strand, within BWI76_RS06675 at 1399.818 kb on - strand, within BWI76_RS06675 at 1399.886 kb on - strand, within BWI76_RS06675 at 1399.934 kb on + strand, within BWI76_RS06675 at 1399.993 kb on + strand, within BWI76_RS06675 at 1399.993 kb on + strand, within BWI76_RS06675 at 1399.993 kb on + strand, within BWI76_RS06675 at 1400.001 kb on - strand at 1400.010 kb on + strand at 1400.020 kb on + strand at 1400.252 kb on + strand at 1400.473 kb on + strand, within BWI76_RS06680 at 1400.523 kb on + strand at 1400.627 kb on - strand at 1400.632 kb on - strand at 1400.676 kb on + strand at 1400.746 kb on + strand, within BWI76_RS06685 at 1400.754 kb on - strand, within BWI76_RS06685 at 1400.829 kb on - strand, within BWI76_RS06685 at 1400.843 kb on - strand, within BWI76_RS06685 at 1400.911 kb on + strand, within BWI76_RS06685 at 1401.047 kb on - strand, within BWI76_RS06685 at 1401.076 kb on - strand, within BWI76_RS06685 at 1401.202 kb on + strand, within BWI76_RS06685 at 1401.459 kb on + strand, within BWI76_RS06685 at 1401.482 kb on + strand, within BWI76_RS06685 at 1401.482 kb on + strand, within BWI76_RS06685 at 1401.496 kb on - strand, within BWI76_RS06685 at 1401.544 kb on + strand, within BWI76_RS06685 at 1401.772 kb on - strand, within BWI76_RS06685 at 1401.784 kb on + strand, within BWI76_RS06685 at 1401.784 kb on + strand, within BWI76_RS06685 at 1401.860 kb on + strand, within BWI76_RS06685 at 1401.986 kb on + strand at 1401.996 kb on + strand at 1402.004 kb on - strand at 1402.144 kb on - strand at 1402.154 kb on - strand at 1402.187 kb on - strand at 1402.250 kb on + strand at 1402.290 kb on - strand at 1402.383 kb on + strand at 1402.514 kb on - strand, within BWI76_RS06690 at 1402.514 kb on - strand, within BWI76_RS06690 at 1402.519 kb on - strand, within BWI76_RS06690 at 1402.683 kb on - strand, within BWI76_RS06690 at 1402.706 kb on - strand, within BWI76_RS06690 at 1402.883 kb on - strand, within BWI76_RS06690 at 1402.896 kb on + strand, within BWI76_RS06690 at 1402.982 kb on - strand, within BWI76_RS06690 at 1403.053 kb on + strand, within BWI76_RS06690 at 1403.058 kb on + strand, within BWI76_RS06690
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,399,554 + BWI76_RS06675 0.36 -0.3 1,399,554 + BWI76_RS06675 0.36 +0.1 1,399,554 + BWI76_RS06675 0.36 -0.1 1,399,562 - BWI76_RS06675 0.37 +3.5 1,399,640 + BWI76_RS06675 0.47 -0.1 1,399,808 - BWI76_RS06675 0.67 +0.2 1,399,818 - BWI76_RS06675 0.68 -0.3 1,399,886 - BWI76_RS06675 0.76 +0.3 1,399,934 + BWI76_RS06675 0.82 -0.1 1,399,993 + BWI76_RS06675 0.89 -0.2 1,399,993 + BWI76_RS06675 0.89 -0.1 1,399,993 + BWI76_RS06675 0.89 +0.3 1,400,001 - -0.7 1,400,010 + -0.6 1,400,020 + -0.5 1,400,252 + +0.3 1,400,473 + BWI76_RS06680 0.82 -0.7 1,400,523 + +0.8 1,400,627 - +0.6 1,400,632 - -0.8 1,400,676 + -0.6 1,400,746 + BWI76_RS06685 0.14 -1.1 1,400,754 - BWI76_RS06685 0.14 -1.3 1,400,829 - BWI76_RS06685 0.19 -1.2 1,400,843 - BWI76_RS06685 0.20 +0.0 1,400,911 + BWI76_RS06685 0.24 -0.7 1,401,047 - BWI76_RS06685 0.33 -0.5 1,401,076 - BWI76_RS06685 0.35 -1.5 1,401,202 + BWI76_RS06685 0.43 -1.1 1,401,459 + BWI76_RS06685 0.59 +1.6 1,401,482 + BWI76_RS06685 0.60 -0.2 1,401,482 + BWI76_RS06685 0.60 -1.9 1,401,496 - BWI76_RS06685 0.61 -1.2 1,401,544 + BWI76_RS06685 0.64 -1.5 1,401,772 - BWI76_RS06685 0.79 +0.1 1,401,784 + BWI76_RS06685 0.79 -1.4 1,401,784 + BWI76_RS06685 0.79 -1.3 1,401,860 + BWI76_RS06685 0.84 -1.0 1,401,986 + +0.6 1,401,996 + -2.1 1,402,004 - -0.7 1,402,144 - -0.4 1,402,154 - +2.5 1,402,187 - -0.6 1,402,250 + -0.2 1,402,290 - -0.5 1,402,383 + -0.5 1,402,514 - BWI76_RS06690 0.14 +1.0 1,402,514 - BWI76_RS06690 0.14 +0.2 1,402,519 - BWI76_RS06690 0.15 -0.5 1,402,683 - BWI76_RS06690 0.30 +0.0 1,402,706 - BWI76_RS06690 0.32 +0.1 1,402,883 - BWI76_RS06690 0.48 -0.0 1,402,896 + BWI76_RS06690 0.49 -0.5 1,402,982 - BWI76_RS06690 0.56 -0.1 1,403,053 + BWI76_RS06690 0.63 -0.3 1,403,058 + BWI76_RS06690 0.63 +0.2
Or see this region's nucleotide sequence