Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS02495

Experiment: L-Valine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS02490 and PFLU_RS02495 are separated by 122 nucleotidesPFLU_RS02495 and PFLU_RS02500 are separated by 16 nucleotidesPFLU_RS02500 and PFLU_RS02505 are separated by 57 nucleotides PFLU_RS02490: PFLU_RS02490 - phosphoserine phosphatase SerB, at 573,169 to 574,383 _RS02490 PFLU_RS02495: PFLU_RS02495 - phosphatidylserine decarboxylase, at 574,506 to 575,366 _RS02495 PFLU_RS02500: PFLU_RS02500 - sulfurtransferase, at 575,383 to 576,198 _RS02500 PFLU_RS02505: PFLU_RS02505 - HDOD domain-containing protein, at 576,256 to 577,791 _RS02505 Position (kb) 574 575 576Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9 10at 573.532 kb on + strand, within PFLU_RS02490at 573.532 kb on + strand, within PFLU_RS02490at 573.532 kb on + strand, within PFLU_RS02490at 573.532 kb on + strand, within PFLU_RS02490at 573.532 kb on + strand, within PFLU_RS02490at 573.532 kb on + strand, within PFLU_RS02490at 573.533 kb on - strand, within PFLU_RS02490at 573.533 kb on - strand, within PFLU_RS02490at 573.533 kb on - strand, within PFLU_RS02490at 573.533 kb on - strand, within PFLU_RS02490at 573.553 kb on - strand, within PFLU_RS02490at 573.692 kb on - strand, within PFLU_RS02490at 573.850 kb on - strand, within PFLU_RS02490at 573.850 kb on - strand, within PFLU_RS02490at 573.850 kb on - strand, within PFLU_RS02490at 574.000 kb on + strand, within PFLU_RS02490at 574.000 kb on + strand, within PFLU_RS02490at 574.001 kb on - strand, within PFLU_RS02490at 574.033 kb on + strand, within PFLU_RS02490at 574.033 kb on + strand, within PFLU_RS02490at 574.033 kb on + strand, within PFLU_RS02490at 574.033 kb on + strand, within PFLU_RS02490at 574.033 kb on + strand, within PFLU_RS02490at 574.033 kb on + strand, within PFLU_RS02490at 574.034 kb on - strand, within PFLU_RS02490at 574.034 kb on - strand, within PFLU_RS02490at 574.034 kb on - strand, within PFLU_RS02490at 574.034 kb on - strand, within PFLU_RS02490at 574.034 kb on - strand, within PFLU_RS02490at 574.034 kb on - strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.345 kb on + strandat 574.345 kb on + strandat 574.345 kb on + strandat 574.345 kb on + strandat 574.345 kb on + strandat 574.345 kb on + strandat 574.345 kb on + strandat 574.345 kb on + strandat 574.345 kb on + strandat 574.345 kb on + strandat 574.345 kb on + strandat 574.345 kb on + strandat 574.345 kb on + strandat 574.345 kb on + strandat 574.345 kb on + strandat 574.346 kb on - strandat 574.346 kb on - strandat 574.346 kb on - strandat 574.346 kb on - strandat 574.346 kb on - strandat 574.346 kb on - strandat 574.346 kb on - strandat 574.346 kb on - strandat 574.346 kb on - strandat 574.381 kb on + strandat 574.381 kb on + strandat 574.381 kb on + strandat 574.381 kb on + strandat 574.381 kb on + strandat 574.382 kb on - strandat 574.382 kb on - strandat 574.382 kb on - strandat 574.382 kb on - strandat 574.382 kb on - strandat 574.389 kb on + strandat 574.390 kb on - strandat 574.390 kb on - strandat 574.436 kb on + strandat 574.436 kb on + strandat 574.436 kb on + strandat 574.436 kb on + strandat 574.436 kb on + strandat 574.436 kb on + strandat 574.436 kb on + strandat 574.450 kb on + strandat 574.450 kb on + strandat 574.450 kb on + strandat 574.450 kb on + strandat 574.450 kb on + strandat 574.450 kb on + strandat 574.450 kb on + strandat 574.450 kb on + strandat 574.451 kb on - strandat 574.451 kb on - strandat 574.451 kb on - strandat 574.451 kb on - strandat 574.451 kb on - strandat 574.451 kb on - strandat 574.451 kb on - strandat 574.451 kb on - strandat 575.369 kb on - strandat 575.369 kb on - strandat 575.369 kb on - strandat 575.369 kb on - strandat 575.369 kb on - strandat 575.369 kb on - strandat 575.369 kb on - strandat 575.369 kb on - strandat 575.369 kb on - strandat 575.369 kb on - strandat 575.377 kb on + strandat 575.377 kb on + strandat 575.377 kb on + strandat 575.378 kb on - strandat 575.378 kb on - strandat 575.384 kb on + strandat 575.385 kb on - strandat 575.385 kb on - strandat 575.385 kb on - strandat 575.438 kb on + strandat 575.439 kb on - strandat 575.480 kb on + strand, within PFLU_RS02500at 575.480 kb on + strand, within PFLU_RS02500at 575.480 kb on + strand, within PFLU_RS02500at 575.480 kb on + strand, within PFLU_RS02500at 575.480 kb on + strand, within PFLU_RS02500at 575.480 kb on + strand, within PFLU_RS02500at 575.481 kb on - strand, within PFLU_RS02500at 575.481 kb on - strand, within PFLU_RS02500at 575.481 kb on - strand, within PFLU_RS02500at 575.481 kb on - strand, within PFLU_RS02500at 575.481 kb on - strand, within PFLU_RS02500at 575.481 kb on - strand, within PFLU_RS02500at 575.481 kb on - strand, within PFLU_RS02500at 575.481 kb on - strand, within PFLU_RS02500at 575.481 kb on - strand, within PFLU_RS02500at 575.481 kb on - strand, within PFLU_RS02500at 575.641 kb on - strand, within PFLU_RS02500at 575.641 kb on - strand, within PFLU_RS02500at 575.679 kb on - strand, within PFLU_RS02500at 575.741 kb on + strand, within PFLU_RS02500at 575.741 kb on + strand, within PFLU_RS02500at 575.742 kb on - strand, within PFLU_RS02500at 575.864 kb on + strand, within PFLU_RS02500at 575.864 kb on + strand, within PFLU_RS02500at 575.864 kb on + strand, within PFLU_RS02500at 575.865 kb on - strand, within PFLU_RS02500at 575.870 kb on + strand, within PFLU_RS02500at 575.870 kb on + strand, within PFLU_RS02500at 575.870 kb on + strand, within PFLU_RS02500at 575.870 kb on + strand, within PFLU_RS02500at 575.870 kb on + strand, within PFLU_RS02500at 575.870 kb on + strand, within PFLU_RS02500at 575.870 kb on + strand, within PFLU_RS02500at 575.870 kb on + strand, within PFLU_RS02500at 575.870 kb on + strand, within PFLU_RS02500at 575.870 kb on + strand, within PFLU_RS02500at 575.871 kb on - strand, within PFLU_RS02500at 575.871 kb on - strand, within PFLU_RS02500at 575.871 kb on - strand, within PFLU_RS02500at 575.871 kb on - strand, within PFLU_RS02500at 575.871 kb on - strand, within PFLU_RS02500at 575.905 kb on - strand, within PFLU_RS02500at 575.939 kb on + strand, within PFLU_RS02500at 575.939 kb on + strand, within PFLU_RS02500at 575.939 kb on + strand, within PFLU_RS02500at 575.939 kb on + strand, within PFLU_RS02500at 575.939 kb on + strand, within PFLU_RS02500at 575.940 kb on - strand, within PFLU_RS02500at 575.940 kb on - strand, within PFLU_RS02500at 575.940 kb on - strand, within PFLU_RS02500at 575.948 kb on + strand, within PFLU_RS02500at 575.948 kb on + strand, within PFLU_RS02500at 575.948 kb on + strand, within PFLU_RS02500at 575.948 kb on + strand, within PFLU_RS02500at 575.948 kb on + strand, within PFLU_RS02500at 575.948 kb on + strand, within PFLU_RS02500at 575.948 kb on + strand, within PFLU_RS02500at 575.948 kb on + strand, within PFLU_RS02500at 575.948 kb on + strand, within PFLU_RS02500at 575.948 kb on + strand, within PFLU_RS02500at 575.948 kb on + strand, within PFLU_RS02500at 575.948 kb on + strand, within PFLU_RS02500at 575.948 kb on + strand, within PFLU_RS02500at 575.948 kb on + strand, within PFLU_RS02500at 575.948 kb on + strand, within PFLU_RS02500at 575.948 kb on + strand, within PFLU_RS02500at 575.948 kb on + strand, within PFLU_RS02500at 575.948 kb on + strand, within PFLU_RS02500at 575.948 kb on + strand, within PFLU_RS02500at 575.948 kb on + strand, within PFLU_RS02500at 575.948 kb on + strand, within PFLU_RS02500at 575.948 kb on + strand, within PFLU_RS02500at 575.948 kb on + strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 575.949 kb on - strand, within PFLU_RS02500at 576.078 kb on + strand, within PFLU_RS02500at 576.079 kb on - strand, within PFLU_RS02500at 576.229 kb on + strandat 576.230 kb on - strandat 576.230 kb on - strandat 576.245 kb on + strandat 576.245 kb on + strandat 576.245 kb on + strandat 576.246 kb on - strandat 576.246 kb on - strandat 576.273 kb on + strandat 576.274 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine 10 mM (C)
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573,532 + PFLU_RS02490 0.30 -1.2
573,532 + PFLU_RS02490 0.30 +3.8
573,532 + PFLU_RS02490 0.30 +1.1
573,532 + PFLU_RS02490 0.30 +7.2
573,532 + PFLU_RS02490 0.30 +3.9
573,532 + PFLU_RS02490 0.30 +3.1
573,533 - PFLU_RS02490 0.30 +7.9
573,533 - PFLU_RS02490 0.30 -0.4
573,533 - PFLU_RS02490 0.30 +5.2
573,533 - PFLU_RS02490 0.30 +5.7
573,553 - PFLU_RS02490 0.32 +7.6
573,692 - PFLU_RS02490 0.43 +2.3
573,850 - PFLU_RS02490 0.56 +6.6
573,850 - PFLU_RS02490 0.56 +7.7
573,850 - PFLU_RS02490 0.56 -0.2
574,000 + PFLU_RS02490 0.68 +8.8
574,000 + PFLU_RS02490 0.68 +4.8
574,001 - PFLU_RS02490 0.68 +5.1
574,033 + PFLU_RS02490 0.71 +2.8
574,033 + PFLU_RS02490 0.71 +6.6
574,033 + PFLU_RS02490 0.71 +6.4
574,033 + PFLU_RS02490 0.71 +5.6
574,033 + PFLU_RS02490 0.71 +6.6
574,033 + PFLU_RS02490 0.71 +7.4
574,034 - PFLU_RS02490 0.71 +6.2
574,034 - PFLU_RS02490 0.71 +8.4
574,034 - PFLU_RS02490 0.71 +1.1
574,034 - PFLU_RS02490 0.71 +0.6
574,034 - PFLU_RS02490 0.71 +9.2
574,034 - PFLU_RS02490 0.71 +4.2
574,072 + PFLU_RS02490 0.74 -1.2
574,072 + PFLU_RS02490 0.74 +5.3
574,072 + PFLU_RS02490 0.74 +8.7
574,072 + PFLU_RS02490 0.74 +5.5
574,072 + PFLU_RS02490 0.74 +5.3
574,072 + PFLU_RS02490 0.74 +7.8
574,072 + PFLU_RS02490 0.74 +7.1
574,072 + PFLU_RS02490 0.74 +8.5
574,072 + PFLU_RS02490 0.74 +4.6
574,072 + PFLU_RS02490 0.74 +8.4
574,072 + PFLU_RS02490 0.74 +6.9
574,072 + PFLU_RS02490 0.74 +8.5
574,072 + PFLU_RS02490 0.74 +0.1
574,072 + PFLU_RS02490 0.74 +0.9
574,073 - PFLU_RS02490 0.74 +9.8
574,073 - PFLU_RS02490 0.74 +4.9
574,073 - PFLU_RS02490 0.74 +6.0
574,073 - PFLU_RS02490 0.74 +7.3
574,073 - PFLU_RS02490 0.74 +9.7
574,073 - PFLU_RS02490 0.74 +3.8
574,073 - PFLU_RS02490 0.74 +4.9
574,073 - PFLU_RS02490 0.74 +7.7
574,073 - PFLU_RS02490 0.74 +8.3
574,073 - PFLU_RS02490 0.74 +3.4
574,073 - PFLU_RS02490 0.74 +1.5
574,073 - PFLU_RS02490 0.74 +1.1
574,073 - PFLU_RS02490 0.74 +5.4
574,073 - PFLU_RS02490 0.74 +6.0
574,073 - PFLU_RS02490 0.74 +6.3
574,073 - PFLU_RS02490 0.74 +4.8
574,345 + -1.1
574,345 + +7.3
574,345 + +4.2
574,345 + +4.7
574,345 + +8.2
574,345 + +6.7
574,345 + +2.1
574,345 + +2.7
574,345 + +1.0
574,345 + +8.3
574,345 + +1.3
574,345 + +6.9
574,345 + -1.8
574,345 + +1.7
574,345 + +4.2
574,346 - +4.5
574,346 - +5.7
574,346 - +5.8
574,346 - +6.9
574,346 - +4.5
574,346 - -1.5
574,346 - +1.8
574,346 - +6.6
574,346 - -0.2
574,381 + +0.1
574,381 + -1.1
574,381 + +0.8
574,381 + -1.2
574,381 + +3.1
574,382 - -1.1
574,382 - +3.7
574,382 - +1.2
574,382 - -1.4
574,382 - +1.7
574,389 + +1.0
574,390 - +2.1
574,390 - +0.2
574,436 + -2.2
574,436 + +2.0
574,436 + +2.1
574,436 + +0.7
574,436 + -1.5
574,436 + +0.7
574,436 + -1.4
574,450 + +0.9
574,450 + +0.1
574,450 + -0.6
574,450 + +1.1
574,450 + -0.2
574,450 + +0.5
574,450 + +1.5
574,450 + +0.5
574,451 - +1.6
574,451 - +1.5
574,451 - +1.7
574,451 - +0.5
574,451 - -1.2
574,451 - +2.3
574,451 - +0.1
574,451 - +1.4
575,369 - +0.8
575,369 - -2.1
575,369 - -1.0
575,369 - -1.5
575,369 - +1.8
575,369 - +0.5
575,369 - +1.6
575,369 - +1.8
575,369 - -0.2
575,369 - +0.7
575,377 + +0.5
575,377 + -0.4
575,377 + -1.6
575,378 - +0.5
575,378 - +2.1
575,384 + -1.2
575,385 - +1.0
575,385 - +1.4
575,385 - -0.9
575,438 + +0.9
575,439 - -0.5
575,480 + PFLU_RS02500 0.12 +0.1
575,480 + PFLU_RS02500 0.12 -1.6
575,480 + PFLU_RS02500 0.12 -0.0
575,480 + PFLU_RS02500 0.12 -0.6
575,480 + PFLU_RS02500 0.12 +3.2
575,480 + PFLU_RS02500 0.12 -1.2
575,481 - PFLU_RS02500 0.12 +0.2
575,481 - PFLU_RS02500 0.12 -1.9
575,481 - PFLU_RS02500 0.12 +2.1
575,481 - PFLU_RS02500 0.12 -1.5
575,481 - PFLU_RS02500 0.12 -0.2
575,481 - PFLU_RS02500 0.12 +2.1
575,481 - PFLU_RS02500 0.12 +0.7
575,481 - PFLU_RS02500 0.12 +2.5
575,481 - PFLU_RS02500 0.12 +1.9
575,481 - PFLU_RS02500 0.12 +1.3
575,641 - PFLU_RS02500 0.32 +2.0
575,641 - PFLU_RS02500 0.32 +1.2
575,679 - PFLU_RS02500 0.36 +1.4
575,741 + PFLU_RS02500 0.44 +1.4
575,741 + PFLU_RS02500 0.44 -0.3
575,742 - PFLU_RS02500 0.44 +1.3
575,864 + PFLU_RS02500 0.59 -1.2
575,864 + PFLU_RS02500 0.59 +0.1
575,864 + PFLU_RS02500 0.59 -0.5
575,865 - PFLU_RS02500 0.59 +3.2
575,870 + PFLU_RS02500 0.60 +1.1
575,870 + PFLU_RS02500 0.60 +0.5
575,870 + PFLU_RS02500 0.60 +0.1
575,870 + PFLU_RS02500 0.60 -0.6
575,870 + PFLU_RS02500 0.60 -0.1
575,870 + PFLU_RS02500 0.60 +0.1
575,870 + PFLU_RS02500 0.60 -1.6
575,870 + PFLU_RS02500 0.60 -0.8
575,870 + PFLU_RS02500 0.60 -2.1
575,870 + PFLU_RS02500 0.60 +0.4
575,871 - PFLU_RS02500 0.60 +0.2
575,871 - PFLU_RS02500 0.60 -0.2
575,871 - PFLU_RS02500 0.60 -2.1
575,871 - PFLU_RS02500 0.60 -1.0
575,871 - PFLU_RS02500 0.60 +0.6
575,905 - PFLU_RS02500 0.64 +1.0
575,939 + PFLU_RS02500 0.68 -2.0
575,939 + PFLU_RS02500 0.68 +3.2
575,939 + PFLU_RS02500 0.68 -1.2
575,939 + PFLU_RS02500 0.68 +2.4
575,939 + PFLU_RS02500 0.68 -0.5
575,940 - PFLU_RS02500 0.68 -1.6
575,940 - PFLU_RS02500 0.68 +2.3
575,940 - PFLU_RS02500 0.68 +1.7
575,948 + PFLU_RS02500 0.69 -0.3
575,948 + PFLU_RS02500 0.69 +0.4
575,948 + PFLU_RS02500 0.69 +1.0
575,948 + PFLU_RS02500 0.69 -0.2
575,948 + PFLU_RS02500 0.69 -0.5
575,948 + PFLU_RS02500 0.69 +0.9
575,948 + PFLU_RS02500 0.69 -1.9
575,948 + PFLU_RS02500 0.69 -1.2
575,948 + PFLU_RS02500 0.69 -1.0
575,948 + PFLU_RS02500 0.69 +0.0
575,948 + PFLU_RS02500 0.69 +1.5
575,948 + PFLU_RS02500 0.69 +0.1
575,948 + PFLU_RS02500 0.69 -1.0
575,948 + PFLU_RS02500 0.69 +1.3
575,948 + PFLU_RS02500 0.69 -0.7
575,948 + PFLU_RS02500 0.69 -0.2
575,948 + PFLU_RS02500 0.69 -0.6
575,948 + PFLU_RS02500 0.69 +0.6
575,948 + PFLU_RS02500 0.69 -1.8
575,948 + PFLU_RS02500 0.69 -0.8
575,948 + PFLU_RS02500 0.69 -0.0
575,948 + PFLU_RS02500 0.69 -0.2
575,948 + PFLU_RS02500 0.69 +0.3
575,949 - PFLU_RS02500 0.69 +0.9
575,949 - PFLU_RS02500 0.69 +0.7
575,949 - PFLU_RS02500 0.69 -0.5
575,949 - PFLU_RS02500 0.69 +0.0
575,949 - PFLU_RS02500 0.69 +1.7
575,949 - PFLU_RS02500 0.69 -0.8
575,949 - PFLU_RS02500 0.69 +0.3
575,949 - PFLU_RS02500 0.69 -0.1
575,949 - PFLU_RS02500 0.69 +1.3
575,949 - PFLU_RS02500 0.69 +0.1
575,949 - PFLU_RS02500 0.69 +0.7
575,949 - PFLU_RS02500 0.69 -0.2
575,949 - PFLU_RS02500 0.69 +2.9
575,949 - PFLU_RS02500 0.69 +0.4
575,949 - PFLU_RS02500 0.69 -1.5
575,949 - PFLU_RS02500 0.69 +2.7
575,949 - PFLU_RS02500 0.69 -0.4
575,949 - PFLU_RS02500 0.69 -1.2
575,949 - PFLU_RS02500 0.69 -0.9
575,949 - PFLU_RS02500 0.69 +2.1
575,949 - PFLU_RS02500 0.69 -0.7
575,949 - PFLU_RS02500 0.69 +1.0
575,949 - PFLU_RS02500 0.69 -0.5
575,949 - PFLU_RS02500 0.69 +0.1
575,949 - PFLU_RS02500 0.69 +0.9
576,078 + PFLU_RS02500 0.85 +0.1
576,079 - PFLU_RS02500 0.85 +1.2
576,229 + +2.7
576,230 - +0.2
576,230 - -1.1
576,245 + +0.2
576,245 + +1.7
576,245 + +0.9
576,246 - +0.4
576,246 - +0.5
576,273 + +2.2
576,274 - -1.1

Or see this region's nucleotide sequence