Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS20880

Experiment: L-Valine 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Valine 10 mM (C)
4,690,839	+				-1.1
4,690,840	-				+1.9
4,690,879	+		PFLU_RS20875	0.11	+0.1
4,690,895	+		PFLU_RS20875	0.14	-1.5
4,690,896	-		PFLU_RS20875	0.14	+4.5
4,690,896	-		PFLU_RS20875	0.14	+5.3
4,690,913	-		PFLU_RS20875	0.16	+2.0
4,690,913	-		PFLU_RS20875	0.16	-0.6
4,690,996	+		PFLU_RS20875	0.28	+0.9
4,690,996	+		PFLU_RS20875	0.28	-2.0
4,690,997	-		PFLU_RS20875	0.28	-0.1
4,690,997	-		PFLU_RS20875	0.28	-0.9
4,690,997	-		PFLU_RS20875	0.28	+1.9
4,690,997	-		PFLU_RS20875	0.28	+1.5
4,690,997	-		PFLU_RS20875	0.28	-1.1
4,690,999	+		PFLU_RS20875	0.28	-0.1
4,690,999	+		PFLU_RS20875	0.28	-1.9
4,690,999	+		PFLU_RS20875	0.28	+0.1
4,691,000	-		PFLU_RS20875	0.28	+0.9
4,691,099	+		PFLU_RS20875	0.42	+1.4
4,691,276	-		PFLU_RS20875	0.67	-1.2
4,691,283	+		PFLU_RS20875	0.68	-0.1
4,691,283	+		PFLU_RS20875	0.68	+1.1
4,691,284	-		PFLU_RS20875	0.68	+2.1
4,691,284	-		PFLU_RS20875	0.68	-1.1
4,691,284	-		PFLU_RS20875	0.68	+3.5
4,691,284	-		PFLU_RS20875	0.68	-1.5
4,691,518	+				-1.2
4,691,518	+				+1.1
4,691,518	+				-0.6
4,691,519	-				-0.1
4,691,519	-				-0.4
4,691,519	-				-1.8
4,691,519	-				-0.1
4,691,575	+				+0.1
4,691,575	+				-2.9
4,691,576	-				-0.2
4,691,576	-				+3.3
4,691,576	-				-1.1
4,691,593	+				-1.4
4,691,594	-				+0.4
4,691,600	+				+0.9
4,691,665	-				-1.8
4,691,803	-		PFLU_RS20880	0.11	-2.6
4,691,948	-		PFLU_RS20880	0.23	-0.1
4,691,986	+		PFLU_RS20880	0.26	+1.5
4,691,986	+		PFLU_RS20880	0.26	-2.0
4,691,986	+		PFLU_RS20880	0.26	-2.1
4,691,987	-		PFLU_RS20880	0.26	-1.8
4,691,989	+		PFLU_RS20880	0.26	+1.4
4,691,989	+		PFLU_RS20880	0.26	+0.9
4,691,989	+		PFLU_RS20880	0.26	-1.1
4,691,989	+		PFLU_RS20880	0.26	-0.5
4,691,989	+		PFLU_RS20880	0.26	-3.0
4,691,989	+		PFLU_RS20880	0.26	+1.9
4,691,989	+		PFLU_RS20880	0.26	+2.6
4,691,989	+		PFLU_RS20880	0.26	+1.6
4,691,989	+		PFLU_RS20880	0.26	-0.8
4,691,989	+		PFLU_RS20880	0.26	+0.5
4,691,989	+		PFLU_RS20880	0.26	+0.9
4,691,990	-		PFLU_RS20880	0.26	-0.1
4,691,990	-		PFLU_RS20880	0.26	-0.2
4,691,990	-		PFLU_RS20880	0.26	+1.9
4,691,990	-		PFLU_RS20880	0.26	-1.1
4,691,990	-		PFLU_RS20880	0.26	-2.0
4,691,990	-		PFLU_RS20880	0.26	+0.5
4,691,990	-		PFLU_RS20880	0.26	-0.9
4,692,091	+		PFLU_RS20880	0.34	-0.8
4,692,092	-		PFLU_RS20880	0.34	-0.7
4,692,205	-		PFLU_RS20880	0.43	-1.1
4,692,400	+		PFLU_RS20880	0.59	-1.9
4,692,400	+		PFLU_RS20880	0.59	-2.0
4,692,401	-		PFLU_RS20880	0.59	-1.1
4,692,401	-		PFLU_RS20880	0.59	+0.5
4,692,401	-		PFLU_RS20880	0.59	-0.9
4,692,401	-		PFLU_RS20880	0.59	+1.4
4,692,401	-		PFLU_RS20880	0.59	-0.1
4,692,406	+		PFLU_RS20880	0.59	+0.4
4,692,406	+		PFLU_RS20880	0.59	+0.3
4,692,406	+		PFLU_RS20880	0.59	-1.4
4,692,406	+		PFLU_RS20880	0.59	+1.2
4,692,406	+		PFLU_RS20880	0.59	-0.4
4,692,406	+		PFLU_RS20880	0.59	-0.1
4,692,406	+		PFLU_RS20880	0.59	-0.4
4,692,406	+		PFLU_RS20880	0.59	-2.0
4,692,406	+		PFLU_RS20880	0.59	+0.1
4,692,406	+		PFLU_RS20880	0.59	+1.5
4,692,406	+		PFLU_RS20880	0.59	+0.1
4,692,406	+		PFLU_RS20880	0.59	-2.2
4,692,406	+		PFLU_RS20880	0.59	+2.6
4,692,406	+		PFLU_RS20880	0.59	+1.9
4,692,406	+		PFLU_RS20880	0.59	-0.2
4,692,406	+		PFLU_RS20880	0.59	+0.2
4,692,407	-		PFLU_RS20880	0.59	-0.9
4,692,407	-		PFLU_RS20880	0.59	-0.2
4,692,407	-		PFLU_RS20880	0.59	+1.2
4,692,407	-		PFLU_RS20880	0.59	+0.8
4,692,407	-		PFLU_RS20880	0.59	-1.2
4,692,407	-		PFLU_RS20880	0.59	-2.1
4,692,407	-		PFLU_RS20880	0.59	-0.9
4,692,407	-		PFLU_RS20880	0.59	+0.0
4,692,407	-		PFLU_RS20880	0.59	-0.6
4,692,407	-		PFLU_RS20880	0.59	-0.6
4,692,407	-		PFLU_RS20880	0.59	+0.6
4,692,493	+		PFLU_RS20880	0.66	+1.2
4,692,493	+		PFLU_RS20880	0.66	-1.8
4,692,494	-		PFLU_RS20880	0.66	-0.9
4,692,494	-		PFLU_RS20880	0.66	-0.9
4,692,612	-		PFLU_RS20880	0.76	+0.6
4,692,714	+		PFLU_RS20880	0.84	+2.6
4,692,714	+		PFLU_RS20880	0.84	+2.2
4,692,714	+		PFLU_RS20880	0.84	+0.0
4,692,715	-		PFLU_RS20880	0.84	-0.2
4,692,715	-		PFLU_RS20880	0.84	-1.1
4,692,800	-				-0.4
4,692,800	-				-0.6
4,692,874	+				-1.5
4,692,874	+				-0.5
4,692,874	+				+1.9
4,692,874	+				-2.1
4,692,874	+				-0.8
4,692,874	+				+1.2
4,692,875	-				-0.2
4,692,875	-				+1.2
4,692,875	-				-1.4
4,692,914	+				+0.4
4,692,915	-				-0.8
4,692,972	+				-1.6
4,693,009	-				+1.3
4,693,154	+				+0.5
4,693,154	+				-0.2
4,693,154	+				-0.9
4,693,175	+				+2.5
4,693,176	-				-0.5
4,693,186	+				+0.6
4,693,186	+				+1.6
4,693,186	+				-0.5
4,693,186	+				-0.9
4,693,186	+				-1.1
4,693,186	+				-0.4
4,693,187	-				+0.1
4,693,187	-				-0.4
4,693,187	-				-1.2
4,693,187	-				-2.1
4,693,187	-				+0.4
4,693,187	-				+3.5
4,693,187	-				+0.1
4,693,286	-		PFLU_RS20885	0.15	+3.1
4,693,310	+		PFLU_RS20885	0.19	-1.8
4,693,310	+		PFLU_RS20885	0.19	+1.6
4,693,310	+		PFLU_RS20885	0.19	+0.9
4,693,311	-		PFLU_RS20885	0.19	+0.5
4,693,311	-		PFLU_RS20885	0.19	+0.5
4,693,379	+		PFLU_RS20885	0.28	-0.8
4,693,379	+		PFLU_RS20885	0.28	+1.6
4,693,379	+		PFLU_RS20885	0.28	-0.0
4,693,380	-		PFLU_RS20885	0.28	+1.3
4,693,380	-		PFLU_RS20885	0.28	+1.9
4,693,380	-		PFLU_RS20885	0.28	+0.1
4,693,380	-		PFLU_RS20885	0.28	+0.9
4,693,577	+		PFLU_RS20885	0.56	-2.1
4,693,577	+		PFLU_RS20885	0.56	-0.6
4,693,658	+		PFLU_RS20885	0.67	+2.2
4,693,658	+		PFLU_RS20885	0.67	-1.0
4,693,659	-		PFLU_RS20885	0.67	-0.2
4,693,659	-		PFLU_RS20885	0.67	-0.6
4,693,659	-		PFLU_RS20885	0.67	-0.3
4,693,659	-		PFLU_RS20885	0.67	-0.6
4,693,659	-		PFLU_RS20885	0.67	+1.6
4,693,667	+		PFLU_RS20885	0.68	-1.3
4,693,718	+		PFLU_RS20885	0.75	-1.6
4,693,719	-		PFLU_RS20885	0.75	+0.4
4,693,719	-		PFLU_RS20885	0.75	+0.3
4,693,719	-		PFLU_RS20885	0.75	+1.3
4,693,803	-		PFLU_RS20885	0.87	-1.4
4,693,892	-				+1.5