Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS20115

Experiment: L-Ornithine 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Ornithine 10 mM (C)
4,552,067	-		PFLU_RS20105	0.88	+0.8
4,552,067	-		PFLU_RS20105	0.88	-2.9
4,552,067	-		PFLU_RS20105	0.88	+1.1
4,552,125	+				-1.0
4,552,125	+				-0.3
4,552,125	+				+1.4
4,552,125	+				-0.4
4,552,125	+				+1.0
4,552,126	-				+0.2
4,552,126	-				+0.6
4,552,126	-				+0.6
4,552,126	-				-1.2
4,552,126	-				-0.4
4,552,126	-				-2.3
4,552,283	+				-1.2
4,552,283	+				-1.6
4,552,284	-				+1.2
4,552,284	-				-0.6
4,552,284	-				-1.0
4,552,341	+				-1.4
4,552,341	+				+1.2
4,552,341	+				+0.6
4,552,341	+				+1.2
4,552,341	+				-0.1
4,552,341	+				+2.2
4,552,341	+				+0.1
4,552,341	+				-0.8
4,552,342	-				-0.3
4,552,342	-				-1.2
4,552,342	-				+0.6
4,552,342	-				-1.2
4,552,342	-				-1.6
4,552,342	-				-1.0
4,552,342	-				-2.0
4,552,342	-				-0.8
4,552,342	-				-2.3
4,552,342	-				+2.5
4,552,343	+				+0.9
4,552,343	+				-1.1
4,552,343	+				-1.2
4,552,343	+				+0.9
4,552,343	+				-1.8
4,552,343	+				+0.8
4,552,343	+				-1.0
4,552,343	+				-0.0
4,552,344	-				+1.3
4,552,344	-				-0.8
4,552,344	-				-0.8
4,552,344	-				-1.3
4,552,344	-				-2.4
4,552,344	-				-0.0
4,552,344	-				+1.1
4,552,462	+		PFLU_RS20110	0.26	-2.1
4,552,462	+		PFLU_RS20110	0.26	-0.4
4,552,462	+		PFLU_RS20110	0.26	+4.9
4,552,462	+		PFLU_RS20110	0.26	-2.0
4,552,462	+		PFLU_RS20110	0.26	+0.9
4,552,462	+		PFLU_RS20110	0.26	+0.7
4,552,462	+		PFLU_RS20110	0.26	-0.8
4,552,462	+		PFLU_RS20110	0.26	-0.4
4,552,462	+		PFLU_RS20110	0.26	-1.9
4,552,463	-		PFLU_RS20110	0.26	-1.3
4,552,463	-		PFLU_RS20110	0.26	+1.9
4,552,517	+		PFLU_RS20110	0.37	+0.3
4,552,517	+		PFLU_RS20110	0.37	+0.2
4,552,517	+		PFLU_RS20110	0.37	-0.4
4,552,517	+		PFLU_RS20110	0.37	-2.1
4,552,517	+		PFLU_RS20110	0.37	+1.1
4,552,517	+		PFLU_RS20110	0.37	+1.9
4,552,518	-		PFLU_RS20110	0.37	+1.3
4,552,518	-		PFLU_RS20110	0.37	-2.6
4,552,518	-		PFLU_RS20110	0.37	+0.2
4,552,518	-		PFLU_RS20110	0.37	-0.3
4,552,518	-		PFLU_RS20110	0.37	+0.4
4,552,518	-		PFLU_RS20110	0.37	+1.6
4,552,518	-		PFLU_RS20110	0.37	-2.1
4,552,518	-		PFLU_RS20110	0.37	-0.8
4,552,518	-		PFLU_RS20110	0.37	-0.6
4,552,551	+		PFLU_RS20110	0.44	+1.6
4,552,552	-		PFLU_RS20110	0.44	-0.8
4,552,802	+				-1.5
4,552,838	-				-1.2
4,552,850	-				-2.2
4,552,878	+				-1.8
4,552,920	+				-1.2
4,552,920	+				-0.4
4,552,921	-				+0.3
4,552,921	-				+0.2
4,552,921	-				-2.7
4,552,921	-				+0.5
4,552,969	+				+1.3
4,552,969	+				+1.2
4,552,969	+				-0.3
4,552,969	+				+1.6
4,552,984	-				-0.1
4,553,021	+				-0.0
4,553,022	-				+0.3
4,553,094	+				-0.0
4,553,095	-				+0.9
4,553,250	+		PFLU_RS20115	0.23	-3.1
4,553,320	+		PFLU_RS20115	0.30	-1.2
4,553,321	-		PFLU_RS20115	0.30	-0.8
4,553,366	+		PFLU_RS20115	0.35	-0.6
4,553,366	+		PFLU_RS20115	0.35	+0.2
4,553,367	-		PFLU_RS20115	0.35	-0.8
4,553,367	-		PFLU_RS20115	0.35	-1.4
4,553,376	+		PFLU_RS20115	0.36	-1.2
4,553,376	+		PFLU_RS20115	0.36	-0.8
4,553,376	+		PFLU_RS20115	0.36	-3.0
4,553,376	+		PFLU_RS20115	0.36	-0.4
4,553,376	+		PFLU_RS20115	0.36	-0.8
4,553,377	-		PFLU_RS20115	0.36	-1.2
4,553,377	-		PFLU_RS20115	0.36	+1.5
4,553,377	-		PFLU_RS20115	0.36	-0.4
4,553,377	-		PFLU_RS20115	0.36	+0.2
4,553,377	-		PFLU_RS20115	0.36	-2.5
4,553,377	-		PFLU_RS20115	0.36	-0.2
4,553,377	-		PFLU_RS20115	0.36	+0.6
4,553,593	+		PFLU_RS20115	0.56	-0.9
4,553,594	-		PFLU_RS20115	0.56	-1.3
4,553,712	+		PFLU_RS20115	0.68	+2.0
4,553,712	+		PFLU_RS20115	0.68	-0.4
4,553,867	+		PFLU_RS20115	0.83	+1.2
4,553,867	+		PFLU_RS20115	0.83	+2.3
4,553,867	+		PFLU_RS20115	0.83	-1.6
4,553,867	+		PFLU_RS20115	0.83	-1.0
4,553,867	+		PFLU_RS20115	0.83	-0.4
4,553,867	+		PFLU_RS20115	0.83	-1.4
4,553,867	+		PFLU_RS20115	0.83	+0.5
4,553,867	+		PFLU_RS20115	0.83	+0.4
4,553,868	-		PFLU_RS20115	0.83	+0.6
4,553,868	-		PFLU_RS20115	0.83	+0.5
4,553,868	-		PFLU_RS20115	0.83	+0.6
4,553,897	+		PFLU_RS20115	0.86	-1.6
4,553,897	+		PFLU_RS20115	0.86	-2.0
4,553,957	-				-1.4
4,554,024	+				+0.6
4,554,044	+				-0.8
4,554,044	+				-0.8
4,554,045	-				+1.6
4,554,045	-				+1.8
4,554,045	-				-1.8
4,554,183	+				-0.4
4,554,183	+				+0.3
4,554,183	+				+1.2
4,554,184	-				-1.2
4,554,205	+				-1.6
4,554,217	+				+1.0
4,554,218	-				-1.0
4,554,218	-				-2.3
4,554,296	+				-1.6
4,554,297	-				+1.8
4,554,297	-				-2.3
4,554,323	+				-0.0
4,554,324	-				-2.2
4,554,349	+				+1.3
4,554,349	+				-0.6
4,554,400	+				+1.9
4,554,400	+				-1.0
4,554,400	+				+0.6
4,554,401	-				-1.0
4,554,406	+				+0.6
4,554,407	-				-1.6
4,554,407	-				-1.4
4,554,494	+		PFLU_RS20120	0.12	-0.4
4,554,494	+		PFLU_RS20120	0.12	+0.1
4,554,494	+		PFLU_RS20120	0.12	-0.0
4,554,609	+		PFLU_RS20120	0.20	+1.2
4,554,609	+		PFLU_RS20120	0.20	-1.0
4,554,643	+		PFLU_RS20120	0.22	-0.7
4,554,643	+		PFLU_RS20120	0.22	+0.6
4,554,644	-		PFLU_RS20120	0.22	-1.2
4,554,644	-		PFLU_RS20120	0.22	+2.1
4,554,644	-		PFLU_RS20120	0.22	-1.0
4,554,667	+		PFLU_RS20120	0.23	+0.4
4,554,694	-		PFLU_RS20120	0.25	+1.1
4,554,694	-		PFLU_RS20120	0.25	-1.5
4,554,765	+		PFLU_RS20120	0.30	+2.6
4,554,765	+		PFLU_RS20120	0.30	-2.0
4,554,766	-		PFLU_RS20120	0.30	-1.3
4,554,793	+		PFLU_RS20120	0.32	+0.8
4,554,794	-		PFLU_RS20120	0.32	-0.0
4,554,794	-		PFLU_RS20120	0.32	-0.2
4,554,998	-		PFLU_RS20120	0.45	+0.1
4,554,998	-		PFLU_RS20120	0.45	-1.0