Experiment: Trisodium citrate 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS24075 and PFLU_RS24080 are separated by 1 nucleotides PFLU_RS24080 and PFLU_RS24085 are separated by 151 nucleotides PFLU_RS24085 and PFLU_RS24090 are separated by 0 nucleotides PFLU_RS24090 and PFLU_RS24095 are separated by 67 nucleotides
PFLU_RS24075: PFLU_RS24075 - protein TolQ, at 5,391,195 to 5,391,890
_RS24075
PFLU_RS24080: PFLU_RS24080 - tol-pal system-associated acyl-CoA thioesterase, at 5,391,892 to 5,392,347
_RS24080
PFLU_RS24085: PFLU_RS24085 - Holliday junction branch migration DNA helicase RuvB, at 5,392,499 to 5,393,557
_RS24085
PFLU_RS24090: PFLU_RS24090 - Holliday junction branch migration protein RuvA, at 5,393,558 to 5,394,169
_RS24090
PFLU_RS24095: PFLU_RS24095 - crossover junction endodeoxyribonuclease RuvC, at 5,394,237 to 5,394,761
_RS24095
Position (kb) 5392
5393
5394 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5391.916 kb on - strand at 5391.928 kb on + strand at 5391.928 kb on + strand at 5391.928 kb on + strand at 5391.928 kb on + strand at 5391.929 kb on - strand at 5391.929 kb on - strand at 5391.929 kb on - strand at 5391.949 kb on + strand, within PFLU_RS24080 at 5391.949 kb on + strand, within PFLU_RS24080 at 5391.949 kb on + strand, within PFLU_RS24080 at 5391.949 kb on + strand, within PFLU_RS24080 at 5391.949 kb on + strand, within PFLU_RS24080 at 5391.949 kb on + strand, within PFLU_RS24080 at 5391.950 kb on - strand, within PFLU_RS24080 at 5391.950 kb on - strand, within PFLU_RS24080 at 5391.950 kb on - strand, within PFLU_RS24080 at 5391.950 kb on - strand, within PFLU_RS24080 at 5391.950 kb on - strand, within PFLU_RS24080 at 5391.981 kb on + strand, within PFLU_RS24080 at 5391.981 kb on + strand, within PFLU_RS24080 at 5391.981 kb on + strand, within PFLU_RS24080 at 5391.981 kb on + strand, within PFLU_RS24080 at 5391.982 kb on - strand, within PFLU_RS24080 at 5391.982 kb on - strand, within PFLU_RS24080 at 5391.982 kb on - strand, within PFLU_RS24080 at 5391.982 kb on - strand, within PFLU_RS24080 at 5391.982 kb on - strand, within PFLU_RS24080 at 5391.982 kb on - strand, within PFLU_RS24080 at 5392.090 kb on + strand, within PFLU_RS24080 at 5392.090 kb on + strand, within PFLU_RS24080 at 5392.091 kb on - strand, within PFLU_RS24080 at 5392.139 kb on + strand, within PFLU_RS24080 at 5392.253 kb on + strand, within PFLU_RS24080 at 5392.253 kb on + strand, within PFLU_RS24080 at 5392.253 kb on + strand, within PFLU_RS24080 at 5392.253 kb on + strand, within PFLU_RS24080 at 5392.253 kb on + strand, within PFLU_RS24080 at 5392.254 kb on - strand, within PFLU_RS24080 at 5392.262 kb on + strand, within PFLU_RS24080 at 5392.262 kb on + strand, within PFLU_RS24080 at 5392.262 kb on + strand, within PFLU_RS24080 at 5392.262 kb on + strand, within PFLU_RS24080 at 5392.262 kb on + strand, within PFLU_RS24080 at 5392.262 kb on + strand, within PFLU_RS24080 at 5392.262 kb on + strand, within PFLU_RS24080 at 5392.262 kb on + strand, within PFLU_RS24080 at 5392.262 kb on + strand, within PFLU_RS24080 at 5392.263 kb on - strand, within PFLU_RS24080 at 5392.263 kb on - strand, within PFLU_RS24080 at 5392.263 kb on - strand, within PFLU_RS24080 at 5392.263 kb on - strand, within PFLU_RS24080 at 5392.263 kb on - strand, within PFLU_RS24080 at 5392.263 kb on - strand, within PFLU_RS24080 at 5392.263 kb on - strand, within PFLU_RS24080 at 5392.263 kb on - strand, within PFLU_RS24080 at 5392.263 kb on - strand, within PFLU_RS24080 at 5392.263 kb on - strand, within PFLU_RS24080 at 5392.263 kb on - strand, within PFLU_RS24080 at 5392.263 kb on - strand, within PFLU_RS24080 at 5392.265 kb on + strand, within PFLU_RS24080 at 5392.265 kb on + strand, within PFLU_RS24080 at 5392.265 kb on + strand, within PFLU_RS24080 at 5392.265 kb on + strand, within PFLU_RS24080 at 5392.265 kb on + strand, within PFLU_RS24080 at 5392.265 kb on + strand, within PFLU_RS24080 at 5392.266 kb on - strand, within PFLU_RS24080 at 5392.266 kb on - strand, within PFLU_RS24080 at 5392.266 kb on - strand, within PFLU_RS24080 at 5392.266 kb on - strand, within PFLU_RS24080 at 5392.266 kb on - strand, within PFLU_RS24080 at 5392.266 kb on - strand, within PFLU_RS24080 at 5392.295 kb on + strand, within PFLU_RS24080 at 5392.295 kb on + strand, within PFLU_RS24080 at 5392.295 kb on + strand, within PFLU_RS24080 at 5392.296 kb on - strand, within PFLU_RS24080 at 5392.296 kb on - strand, within PFLU_RS24080 at 5392.296 kb on - strand, within PFLU_RS24080 at 5392.298 kb on + strand, within PFLU_RS24080 at 5392.299 kb on - strand, within PFLU_RS24080 at 5392.299 kb on - strand, within PFLU_RS24080 at 5392.347 kb on + strand at 5392.347 kb on + strand at 5392.347 kb on + strand at 5392.347 kb on + strand at 5392.347 kb on + strand at 5392.347 kb on + strand at 5392.348 kb on - strand at 5392.348 kb on - strand at 5392.348 kb on - strand at 5392.348 kb on - strand at 5392.348 kb on - strand at 5392.352 kb on + strand at 5392.352 kb on + strand at 5392.352 kb on + strand at 5392.352 kb on + strand at 5392.353 kb on - strand at 5392.353 kb on - strand at 5392.353 kb on - strand at 5392.353 kb on - strand at 5392.353 kb on - strand at 5392.353 kb on - strand at 5392.353 kb on - strand at 5392.353 kb on - strand at 5392.353 kb on - strand at 5392.353 kb on - strand at 5392.359 kb on + strand at 5392.359 kb on + strand at 5392.360 kb on - strand at 5392.360 kb on - strand at 5392.360 kb on - strand at 5392.360 kb on - strand at 5392.360 kb on - strand at 5392.360 kb on - strand at 5392.423 kb on + strand at 5392.424 kb on - strand at 5392.424 kb on - strand at 5392.424 kb on - strand at 5392.456 kb on + strand at 5392.456 kb on + strand at 5392.456 kb on + strand at 5392.456 kb on + strand at 5392.457 kb on - strand at 5392.477 kb on + strand at 5392.477 kb on + strand at 5392.478 kb on - strand at 5392.478 kb on - strand at 5392.478 kb on - strand at 5392.500 kb on + strand at 5392.501 kb on - strand at 5392.501 kb on - strand at 5392.501 kb on - strand at 5392.530 kb on - strand at 5392.532 kb on + strand at 5392.532 kb on + strand at 5392.533 kb on - strand at 5392.533 kb on - strand at 5392.533 kb on - strand at 5392.533 kb on - strand at 5392.533 kb on - strand at 5392.533 kb on - strand at 5392.533 kb on - strand at 5392.582 kb on - strand at 5392.582 kb on - strand at 5392.582 kb on - strand at 5392.626 kb on + strand, within PFLU_RS24085 at 5392.626 kb on + strand, within PFLU_RS24085 at 5392.627 kb on - strand, within PFLU_RS24085 at 5392.627 kb on - strand, within PFLU_RS24085 at 5392.627 kb on - strand, within PFLU_RS24085 at 5392.627 kb on - strand, within PFLU_RS24085 at 5392.627 kb on - strand, within PFLU_RS24085 at 5392.644 kb on + strand, within PFLU_RS24085 at 5392.751 kb on + strand, within PFLU_RS24085 at 5392.751 kb on + strand, within PFLU_RS24085 at 5392.752 kb on - strand, within PFLU_RS24085 at 5392.831 kb on + strand, within PFLU_RS24085 at 5392.831 kb on + strand, within PFLU_RS24085 at 5392.831 kb on + strand, within PFLU_RS24085 at 5393.002 kb on + strand, within PFLU_RS24085 at 5393.002 kb on + strand, within PFLU_RS24085 at 5393.003 kb on - strand, within PFLU_RS24085 at 5393.003 kb on - strand, within PFLU_RS24085 at 5393.003 kb on - strand, within PFLU_RS24085 at 5393.003 kb on - strand, within PFLU_RS24085 at 5393.003 kb on - strand, within PFLU_RS24085 at 5393.004 kb on + strand, within PFLU_RS24085 at 5393.005 kb on - strand, within PFLU_RS24085 at 5393.005 kb on - strand, within PFLU_RS24085 at 5393.005 kb on - strand, within PFLU_RS24085 at 5393.013 kb on - strand, within PFLU_RS24085 at 5393.176 kb on - strand, within PFLU_RS24085 at 5393.423 kb on - strand, within PFLU_RS24085 at 5393.463 kb on + strand at 5393.463 kb on + strand at 5393.463 kb on + strand at 5393.463 kb on + strand at 5393.463 kb on + strand at 5393.463 kb on + strand at 5393.559 kb on + strand at 5393.559 kb on + strand at 5393.559 kb on + strand at 5393.560 kb on - strand at 5393.560 kb on - strand at 5393.560 kb on - strand at 5393.560 kb on - strand at 5393.560 kb on - strand at 5393.560 kb on - strand at 5393.560 kb on - strand at 5393.560 kb on - strand at 5393.655 kb on + strand, within PFLU_RS24090 at 5393.719 kb on + strand, within PFLU_RS24090 at 5393.720 kb on - strand, within PFLU_RS24090 at 5393.756 kb on + strand, within PFLU_RS24090 at 5393.757 kb on - strand, within PFLU_RS24090 at 5393.757 kb on - strand, within PFLU_RS24090 at 5393.757 kb on - strand, within PFLU_RS24090 at 5393.757 kb on - strand, within PFLU_RS24090 at 5393.988 kb on + strand, within PFLU_RS24090 at 5393.988 kb on + strand, within PFLU_RS24090 at 5393.988 kb on + strand, within PFLU_RS24090 at 5393.989 kb on - strand, within PFLU_RS24090 at 5393.989 kb on - strand, within PFLU_RS24090 at 5393.989 kb on - strand, within PFLU_RS24090 at 5394.017 kb on + strand, within PFLU_RS24090 at 5394.017 kb on + strand, within PFLU_RS24090 at 5394.017 kb on + strand, within PFLU_RS24090 at 5394.017 kb on + strand, within PFLU_RS24090 at 5394.017 kb on + strand, within PFLU_RS24090 at 5394.017 kb on + strand, within PFLU_RS24090 at 5394.018 kb on - strand, within PFLU_RS24090 at 5394.018 kb on - strand, within PFLU_RS24090 at 5394.018 kb on - strand, within PFLU_RS24090 at 5394.018 kb on - strand, within PFLU_RS24090 at 5394.093 kb on + strand, within PFLU_RS24090 at 5394.094 kb on - strand, within PFLU_RS24090 at 5394.183 kb on - strand at 5394.183 kb on - strand at 5394.217 kb on + strand at 5394.217 kb on + strand at 5394.217 kb on + strand at 5394.218 kb on - strand at 5394.235 kb on + strand at 5394.235 kb on + strand at 5394.235 kb on + strand at 5394.235 kb on + strand at 5394.236 kb on - strand at 5394.236 kb on - strand at 5394.236 kb on - strand at 5394.236 kb on - strand at 5394.457 kb on + strand, within PFLU_RS24095 at 5394.457 kb on + strand, within PFLU_RS24095 at 5394.457 kb on + strand, within PFLU_RS24095 at 5394.551 kb on + strand, within PFLU_RS24095
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate 10 mM (C) remove 5,391,916 - -0.3 5,391,928 + -1.1 5,391,928 + +1.1 5,391,928 + -1.6 5,391,928 + -1.3 5,391,929 - -0.2 5,391,929 - +1.2 5,391,929 - +0.2 5,391,949 + PFLU_RS24080 0.12 +0.3 5,391,949 + PFLU_RS24080 0.12 +0.1 5,391,949 + PFLU_RS24080 0.12 -1.4 5,391,949 + PFLU_RS24080 0.12 -0.5 5,391,949 + PFLU_RS24080 0.12 +0.2 5,391,949 + PFLU_RS24080 0.12 -2.1 5,391,950 - PFLU_RS24080 0.13 -0.1 5,391,950 - PFLU_RS24080 0.13 +0.2 5,391,950 - PFLU_RS24080 0.13 -1.0 5,391,950 - PFLU_RS24080 0.13 -0.4 5,391,950 - PFLU_RS24080 0.13 -0.1 5,391,981 + PFLU_RS24080 0.20 +0.2 5,391,981 + PFLU_RS24080 0.20 -0.8 5,391,981 + PFLU_RS24080 0.20 +0.2 5,391,981 + PFLU_RS24080 0.20 +0.5 5,391,982 - PFLU_RS24080 0.20 -0.7 5,391,982 - PFLU_RS24080 0.20 -0.7 5,391,982 - PFLU_RS24080 0.20 -0.5 5,391,982 - PFLU_RS24080 0.20 +0.8 5,391,982 - PFLU_RS24080 0.20 -0.5 5,391,982 - PFLU_RS24080 0.20 +0.5 5,392,090 + PFLU_RS24080 0.43 +0.7 5,392,090 + PFLU_RS24080 0.43 -0.0 5,392,091 - PFLU_RS24080 0.44 -0.3 5,392,139 + PFLU_RS24080 0.54 +0.1 5,392,253 + PFLU_RS24080 0.79 -0.4 5,392,253 + PFLU_RS24080 0.79 +0.1 5,392,253 + PFLU_RS24080 0.79 -1.3 5,392,253 + PFLU_RS24080 0.79 +0.8 5,392,253 + PFLU_RS24080 0.79 -2.1 5,392,254 - PFLU_RS24080 0.79 -0.8 5,392,262 + PFLU_RS24080 0.81 -2.1 5,392,262 + PFLU_RS24080 0.81 -0.4 5,392,262 + PFLU_RS24080 0.81 -1.3 5,392,262 + PFLU_RS24080 0.81 +0.1 5,392,262 + PFLU_RS24080 0.81 -1.5 5,392,262 + PFLU_RS24080 0.81 -0.9 5,392,262 + PFLU_RS24080 0.81 -0.5 5,392,262 + PFLU_RS24080 0.81 -0.3 5,392,262 + PFLU_RS24080 0.81 +0.1 5,392,263 - PFLU_RS24080 0.81 -1.8 5,392,263 - PFLU_RS24080 0.81 -1.4 5,392,263 - PFLU_RS24080 0.81 -0.3 5,392,263 - PFLU_RS24080 0.81 -1.4 5,392,263 - PFLU_RS24080 0.81 +1.5 5,392,263 - PFLU_RS24080 0.81 -0.1 5,392,263 - PFLU_RS24080 0.81 -1.2 5,392,263 - PFLU_RS24080 0.81 +1.1 5,392,263 - PFLU_RS24080 0.81 -0.6 5,392,263 - PFLU_RS24080 0.81 +1.6 5,392,263 - PFLU_RS24080 0.81 +1.1 5,392,263 - PFLU_RS24080 0.81 +0.3 5,392,265 + PFLU_RS24080 0.82 -1.9 5,392,265 + PFLU_RS24080 0.82 -0.9 5,392,265 + PFLU_RS24080 0.82 -1.9 5,392,265 + PFLU_RS24080 0.82 -0.9 5,392,265 + PFLU_RS24080 0.82 -0.9 5,392,265 + PFLU_RS24080 0.82 -1.5 5,392,266 - PFLU_RS24080 0.82 -0.7 5,392,266 - PFLU_RS24080 0.82 -0.3 5,392,266 - PFLU_RS24080 0.82 +0.9 5,392,266 - PFLU_RS24080 0.82 -0.4 5,392,266 - PFLU_RS24080 0.82 +1.4 5,392,266 - PFLU_RS24080 0.82 +0.9 5,392,295 + PFLU_RS24080 0.88 -1.5 5,392,295 + PFLU_RS24080 0.88 -0.5 5,392,295 + PFLU_RS24080 0.88 -1.3 5,392,296 - PFLU_RS24080 0.89 +0.7 5,392,296 - PFLU_RS24080 0.89 +1.2 5,392,296 - PFLU_RS24080 0.89 +1.3 5,392,298 + PFLU_RS24080 0.89 -0.5 5,392,299 - PFLU_RS24080 0.89 +0.1 5,392,299 - PFLU_RS24080 0.89 -0.1 5,392,347 + -0.5 5,392,347 + +0.1 5,392,347 + +0.1 5,392,347 + +2.1 5,392,347 + +0.1 5,392,347 + -0.5 5,392,348 - +0.4 5,392,348 - +0.5 5,392,348 - -0.3 5,392,348 - -0.4 5,392,348 - -0.1 5,392,352 + -0.4 5,392,352 + +1.4 5,392,352 + +1.4 5,392,352 + +0.6 5,392,353 - -0.9 5,392,353 - +1.3 5,392,353 - -0.3 5,392,353 - -0.6 5,392,353 - -1.2 5,392,353 - +0.1 5,392,353 - -0.6 5,392,353 - -0.2 5,392,353 - +0.2 5,392,353 - +0.6 5,392,359 + -0.3 5,392,359 + -0.2 5,392,360 - -0.8 5,392,360 - +1.1 5,392,360 - +0.5 5,392,360 - +0.2 5,392,360 - -1.5 5,392,360 - +0.8 5,392,423 + -0.4 5,392,424 - +0.3 5,392,424 - +1.1 5,392,424 - +0.6 5,392,456 + +0.5 5,392,456 + -1.1 5,392,456 + -1.6 5,392,456 + +0.6 5,392,457 - +0.5 5,392,477 + -0.5 5,392,477 + +1.6 5,392,478 - -2.5 5,392,478 - -1.0 5,392,478 - -1.9 5,392,500 + +3.9 5,392,501 - +0.9 5,392,501 - -0.0 5,392,501 - -0.2 5,392,530 - +1.3 5,392,532 + -0.4 5,392,532 + -0.5 5,392,533 - +3.1 5,392,533 - -0.0 5,392,533 - -0.3 5,392,533 - +0.8 5,392,533 - +2.1 5,392,533 - +0.4 5,392,533 - -0.2 5,392,582 - -0.9 5,392,582 - +0.1 5,392,582 - +1.1 5,392,626 + PFLU_RS24085 0.12 +1.1 5,392,626 + PFLU_RS24085 0.12 +0.1 5,392,627 - PFLU_RS24085 0.12 -0.5 5,392,627 - PFLU_RS24085 0.12 -0.5 5,392,627 - PFLU_RS24085 0.12 +0.1 5,392,627 - PFLU_RS24085 0.12 +1.1 5,392,627 - PFLU_RS24085 0.12 +0.1 5,392,644 + PFLU_RS24085 0.14 -0.9 5,392,751 + PFLU_RS24085 0.24 +1.1 5,392,751 + PFLU_RS24085 0.24 +0.5 5,392,752 - PFLU_RS24085 0.24 +1.1 5,392,831 + PFLU_RS24085 0.31 +0.1 5,392,831 + PFLU_RS24085 0.31 +0.1 5,392,831 + PFLU_RS24085 0.31 -0.9 5,393,002 + PFLU_RS24085 0.47 +0.1 5,393,002 + PFLU_RS24085 0.47 +1.1 5,393,003 - PFLU_RS24085 0.48 +1.1 5,393,003 - PFLU_RS24085 0.48 +0.1 5,393,003 - PFLU_RS24085 0.48 +1.1 5,393,003 - PFLU_RS24085 0.48 +1.1 5,393,003 - PFLU_RS24085 0.48 -0.5 5,393,004 + PFLU_RS24085 0.48 +2.1 5,393,005 - PFLU_RS24085 0.48 +0.1 5,393,005 - PFLU_RS24085 0.48 +1.1 5,393,005 - PFLU_RS24085 0.48 -0.5 5,393,013 - PFLU_RS24085 0.49 -0.5 5,393,176 - PFLU_RS24085 0.64 -0.5 5,393,423 - PFLU_RS24085 0.87 -0.5 5,393,463 + +0.1 5,393,463 + +0.1 5,393,463 + +0.1 5,393,463 + -0.9 5,393,463 + +3.6 5,393,463 + -0.5 5,393,559 + +2.4 5,393,559 + -0.5 5,393,559 + +1.1 5,393,560 - -0.5 5,393,560 - +1.1 5,393,560 - +1.3 5,393,560 - +2.1 5,393,560 - +0.5 5,393,560 - -0.3 5,393,560 - +2.6 5,393,560 - +1.1 5,393,655 + PFLU_RS24090 0.16 +1.1 5,393,719 + PFLU_RS24090 0.26 +0.1 5,393,720 - PFLU_RS24090 0.26 +0.1 5,393,756 + PFLU_RS24090 0.32 +0.1 5,393,757 - PFLU_RS24090 0.33 +1.1 5,393,757 - PFLU_RS24090 0.33 -0.3 5,393,757 - PFLU_RS24090 0.33 +2.1 5,393,757 - PFLU_RS24090 0.33 +2.1 5,393,988 + PFLU_RS24090 0.70 -0.9 5,393,988 + PFLU_RS24090 0.70 +0.1 5,393,988 + PFLU_RS24090 0.70 -0.5 5,393,989 - PFLU_RS24090 0.70 +1.1 5,393,989 - PFLU_RS24090 0.70 +1.6 5,393,989 - PFLU_RS24090 0.70 +0.1 5,394,017 + PFLU_RS24090 0.75 +0.6 5,394,017 + PFLU_RS24090 0.75 +1.1 5,394,017 + PFLU_RS24090 0.75 -1.3 5,394,017 + PFLU_RS24090 0.75 +0.1 5,394,017 + PFLU_RS24090 0.75 +1.1 5,394,017 + PFLU_RS24090 0.75 +1.1 5,394,018 - PFLU_RS24090 0.75 -0.5 5,394,018 - PFLU_RS24090 0.75 +1.1 5,394,018 - PFLU_RS24090 0.75 +1.1 5,394,018 - PFLU_RS24090 0.75 +1.1 5,394,093 + PFLU_RS24090 0.87 -0.5 5,394,094 - PFLU_RS24090 0.88 +1.1 5,394,183 - -0.9 5,394,183 - +1.2 5,394,217 + -1.3 5,394,217 + +0.1 5,394,217 + -0.1 5,394,218 - +1.9 5,394,235 + -0.8 5,394,235 + -0.8 5,394,235 + +0.4 5,394,235 + +0.5 5,394,236 - +1.1 5,394,236 - +0.1 5,394,236 - +0.6 5,394,236 - +0.7 5,394,457 + PFLU_RS24095 0.42 +1.6 5,394,457 + PFLU_RS24095 0.42 +1.1 5,394,457 + PFLU_RS24095 0.42 +0.1 5,394,551 + PFLU_RS24095 0.60 -0.9
Or see this region's nucleotide sequence