Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS21845

Experiment: Trisodium citrate 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate 10 mM (C)
4,918,482	-		PFLU_RS21840	0.27	-1.0
4,918,482	-		PFLU_RS21840	0.27	-1.1
4,918,482	-		PFLU_RS21840	0.27	-2.8
4,918,520	+		PFLU_RS21840	0.30	-0.9
4,918,521	-		PFLU_RS21840	0.30	-0.9
4,918,558	+		PFLU_RS21840	0.33	-1.5
4,918,558	+		PFLU_RS21840	0.33	-1.5
4,918,558	+		PFLU_RS21840	0.33	-1.1
4,918,558	+		PFLU_RS21840	0.33	-0.3
4,918,558	+		PFLU_RS21840	0.33	-0.7
4,918,559	-		PFLU_RS21840	0.33	-1.2
4,918,559	-		PFLU_RS21840	0.33	-0.0
4,918,572	-		PFLU_RS21840	0.34	-0.4
4,918,687	+		PFLU_RS21840	0.43	-2.0
4,918,688	-		PFLU_RS21840	0.43	-1.6
4,918,763	+		PFLU_RS21840	0.49	-0.7
4,918,763	+		PFLU_RS21840	0.49	-2.9
4,918,763	+		PFLU_RS21840	0.49	-0.3
4,918,930	+		PFLU_RS21840	0.62	-0.7
4,919,164	+		PFLU_RS21840	0.80	-0.8
4,919,164	+		PFLU_RS21840	0.80	-1.1
4,919,164	+		PFLU_RS21840	0.80	-1.5
4,919,164	+		PFLU_RS21840	0.80	-1.3
4,919,165	-		PFLU_RS21840	0.80	-0.2
4,919,165	-		PFLU_RS21840	0.80	-1.2
4,919,165	-		PFLU_RS21840	0.80	+0.7
4,919,165	-		PFLU_RS21840	0.80	+0.1
4,919,165	-		PFLU_RS21840	0.80	+0.0
4,919,176	+		PFLU_RS21840	0.81	-1.3
4,919,176	+		PFLU_RS21840	0.81	-1.2
4,919,176	+		PFLU_RS21840	0.81	+0.2
4,919,339	+				-1.5
4,919,339	+				-0.3
4,919,340	-				+0.0
4,919,359	+				-1.3
4,919,359	+				-1.7
4,919,359	+				-2.5
4,919,359	+				-0.9
4,919,359	+				-1.9
4,919,359	+				-1.3
4,919,360	-				-0.2
4,919,360	-				-1.8
4,919,385	+				-1.5
4,919,385	+				-0.8
4,919,385	+				-0.2
4,919,385	+				-1.8
4,919,385	+				+1.2
4,919,385	+				+0.0
4,919,385	+				-1.0
4,919,385	+				-0.3
4,919,385	+				-1.7
4,919,386	-				+0.7
4,919,386	-				-0.1
4,919,386	-				-0.2
4,919,386	-				-0.0
4,919,386	-				-1.5
4,919,386	-				-1.4
4,919,386	-				+0.8
4,919,386	-				-1.3
4,919,386	-				-0.2
4,919,386	-				-1.7
4,919,386	-				-0.8
4,919,386	-				-1.0
4,919,386	-				-0.5
4,919,387	+				-0.3
4,919,387	+				-1.2
4,919,387	+				-1.1
4,919,387	+				-0.3
4,919,387	+				-2.9
4,919,387	+				-1.5
4,919,387	+				-0.9
4,919,387	+				+0.8
4,919,388	-				-0.9
4,919,388	-				-0.3
4,919,388	-				-1.1
4,919,388	-				-0.3
4,919,388	-				-0.7
4,919,402	+				-1.2
4,919,402	+				-0.5
4,919,402	+				-0.8
4,919,649	+		PFLU_RS21845	0.21	-2.0
4,919,650	-		PFLU_RS21845	0.21	-1.1
4,919,733	+		PFLU_RS21845	0.28	-1.4
4,919,734	-		PFLU_RS21845	0.28	-0.3
4,919,810	+		PFLU_RS21845	0.35	-0.8
4,919,811	-		PFLU_RS21845	0.35	-0.1
4,919,811	-		PFLU_RS21845	0.35	-1.0
4,919,811	-		PFLU_RS21845	0.35	-1.3
4,919,811	-		PFLU_RS21845	0.35	-0.8
4,919,811	-		PFLU_RS21845	0.35	-0.3
4,919,811	-		PFLU_RS21845	0.35	-0.6
4,919,811	-		PFLU_RS21845	0.35	-0.7
4,919,811	-		PFLU_RS21845	0.35	-0.2
4,920,022	-		PFLU_RS21845	0.54	-1.2
4,920,116	+		PFLU_RS21845	0.63	-1.0
4,920,117	-		PFLU_RS21845	0.63	-1.4
4,920,117	-		PFLU_RS21845	0.63	+1.0
4,920,132	+		PFLU_RS21845	0.64	-2.0
4,920,133	-		PFLU_RS21845	0.64	-1.7
4,920,133	-		PFLU_RS21845	0.64	-1.5
4,920,184	-		PFLU_RS21845	0.69	-1.7
4,920,184	-		PFLU_RS21845	0.69	-0.4
4,920,201	+		PFLU_RS21845	0.71	-0.1
4,920,202	-		PFLU_RS21845	0.71	-1.9
4,920,202	-		PFLU_RS21845	0.71	-1.3
4,920,301	+		PFLU_RS21845	0.80	-0.6
4,920,378	+		PFLU_RS21845	0.87	-0.3
4,920,536	+				-0.8
4,920,536	+				-1.1
4,920,536	+				-0.2
4,920,536	+				-0.8
4,920,536	+				-1.5
4,920,537	-				-0.1
4,920,537	-				+0.5
4,920,537	-				-1.8
4,920,537	-				-0.0
4,920,537	-				-2.2
4,920,537	-				-0.2
4,920,556	-				-1.2
4,920,609	+		PFLU_RS21850	0.11	-0.9
4,920,617	+		PFLU_RS21850	0.12	-1.0
4,920,617	+		PFLU_RS21850	0.12	-0.2
4,920,618	-		PFLU_RS21850	0.12	+0.0
4,920,618	-		PFLU_RS21850	0.12	+0.4
4,920,621	+		PFLU_RS21850	0.12	-0.5
4,920,621	+		PFLU_RS21850	0.12	-0.6
4,920,621	+		PFLU_RS21850	0.12	-2.3
4,920,622	-		PFLU_RS21850	0.12	-0.9
4,920,622	-		PFLU_RS21850	0.12	-1.3
4,920,657	+		PFLU_RS21850	0.18	-1.9
4,920,657	+		PFLU_RS21850	0.18	-0.5
4,920,658	-		PFLU_RS21850	0.18	-2.0
4,920,658	-		PFLU_RS21850	0.18	-1.1
4,920,723	+		PFLU_RS21850	0.27	-0.9
4,920,769	+		PFLU_RS21850	0.34	-1.7
4,920,770	-		PFLU_RS21850	0.34	-1.1
4,920,772	+		PFLU_RS21850	0.34	-1.1
4,920,772	+		PFLU_RS21850	0.34	+0.0
4,920,772	+		PFLU_RS21850	0.34	-0.3
4,920,772	+		PFLU_RS21850	0.34	-1.1
4,920,772	+		PFLU_RS21850	0.34	-0.7
4,920,772	+		PFLU_RS21850	0.34	-2.3
4,920,772	+		PFLU_RS21850	0.34	-0.5
4,920,772	+		PFLU_RS21850	0.34	-1.5
4,920,772	+		PFLU_RS21850	0.34	-0.6
4,920,772	+		PFLU_RS21850	0.34	-0.5
4,920,772	+		PFLU_RS21850	0.34	-0.7
4,920,772	+		PFLU_RS21850	0.34	-2.3
4,920,772	+		PFLU_RS21850	0.34	-0.9
4,920,772	+		PFLU_RS21850	0.34	-0.9
4,920,772	+		PFLU_RS21850	0.34	-0.8
4,920,772	+		PFLU_RS21850	0.34	-1.7
4,920,772	+		PFLU_RS21850	0.34	-0.7
4,920,772	+		PFLU_RS21850	0.34	-0.9
4,920,772	+		PFLU_RS21850	0.34	-0.4
4,920,772	+		PFLU_RS21850	0.34	-1.5
4,920,772	+		PFLU_RS21850	0.34	-1.0
4,920,772	+		PFLU_RS21850	0.34	-2.5
4,920,772	+		PFLU_RS21850	0.34	-0.7
4,920,772	+		PFLU_RS21850	0.34	-1.0
4,920,772	+		PFLU_RS21850	0.34	-0.2
4,920,773	-		PFLU_RS21850	0.34	-0.2
4,920,773	-		PFLU_RS21850	0.34	-0.6
4,920,773	-		PFLU_RS21850	0.34	-0.9
4,920,773	-		PFLU_RS21850	0.34	-0.9
4,920,773	-		PFLU_RS21850	0.34	-0.9
4,920,773	-		PFLU_RS21850	0.34	-1.2
4,920,773	-		PFLU_RS21850	0.34	-1.1
4,920,773	-		PFLU_RS21850	0.34	-1.3
4,920,773	-		PFLU_RS21850	0.34	-0.2
4,920,773	-		PFLU_RS21850	0.34	-0.2
4,920,773	-		PFLU_RS21850	0.34	-1.1
4,920,773	-		PFLU_RS21850	0.34	-2.6
4,920,773	-		PFLU_RS21850	0.34	-1.0
4,920,860	+		PFLU_RS21850	0.47	-2.2
4,920,860	+		PFLU_RS21850	0.47	-1.4
4,920,861	-		PFLU_RS21850	0.47	-0.7
4,920,861	-		PFLU_RS21850	0.47	-0.8
4,921,055	+		PFLU_RS21850	0.75	-0.6
4,921,056	-		PFLU_RS21850	0.75	-0.9
4,921,056	-		PFLU_RS21850	0.75	-0.1
4,921,056	-		PFLU_RS21850	0.75	-0.1
4,921,082	+		PFLU_RS21850	0.79	-3.1
4,921,082	+		PFLU_RS21850	0.79	-1.3
4,921,082	+		PFLU_RS21850	0.79	-0.9
4,921,082	+		PFLU_RS21850	0.79	-1.0
4,921,083	-		PFLU_RS21850	0.79	-1.1
4,921,083	-		PFLU_RS21850	0.79	-1.7
4,921,139	+		PFLU_RS21850	0.87	-0.2
4,921,139	+		PFLU_RS21850	0.87	-1.7
4,921,139	+		PFLU_RS21850	0.87	-0.5
4,921,139	+		PFLU_RS21850	0.87	-0.9
4,921,139	+		PFLU_RS21850	0.87	-0.8
4,921,139	+		PFLU_RS21850	0.87	-2.1
4,921,139	+		PFLU_RS21850	0.87	-2.0
4,921,139	+		PFLU_RS21850	0.87	-1.0
4,921,140	-		PFLU_RS21850	0.87	-1.5
4,921,142	+		PFLU_RS21850	0.87	+0.3
4,921,142	+		PFLU_RS21850	0.87	-0.0
4,921,142	+		PFLU_RS21850	0.87	-0.6
4,921,143	-		PFLU_RS21850	0.87	-2.5
4,921,143	-		PFLU_RS21850	0.87	-1.4
4,921,143	-		PFLU_RS21850	0.87	-0.2
4,921,221	-				-0.9
4,921,221	-				-1.0
4,921,221	-				-0.3
4,921,221	-				+0.0
4,921,221	-				+0.1
4,921,221	-				+0.6
4,921,237	+				-0.6
4,921,238	-				+0.2
4,921,238	-				-0.2
4,921,238	-				-1.3
4,921,283	+				-0.6
4,921,283	+				-0.4
4,921,284	-				+0.3
4,921,298	-				-1.0
4,921,349	+				-0.5
4,921,349	+				-0.3
4,921,350	-				-1.4
4,921,350	-				+0.5
4,921,362	+		PFLU_RS21855	0.10	-1.4
4,921,362	+		PFLU_RS21855	0.10	-1.3
4,921,504	-		PFLU_RS21855	0.28	-0.6