Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16580

Experiment: Trisodium citrate 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate 10 mM (C)
3,758,345	+		PFLU_RS16570	0.36	+0.1
3,758,362	+		PFLU_RS16570	0.40	-0.3
3,758,362	+		PFLU_RS16570	0.40	-2.7
3,758,363	-		PFLU_RS16570	0.40	-0.4
3,758,363	-		PFLU_RS16570	0.40	+1.2
3,758,391	+		PFLU_RS16570	0.46	+0.0
3,758,391	+		PFLU_RS16570	0.46	-0.1
3,758,391	+		PFLU_RS16570	0.46	-0.4
3,758,392	-		PFLU_RS16570	0.46	-1.4
3,758,392	-		PFLU_RS16570	0.46	-1.7
3,758,439	+		PFLU_RS16570	0.56	-0.1
3,758,439	+		PFLU_RS16570	0.56	+1.4
3,758,440	-		PFLU_RS16570	0.56	-0.3
3,758,440	-		PFLU_RS16570	0.56	-1.4
3,758,440	-		PFLU_RS16570	0.56	+0.2
3,758,440	-		PFLU_RS16570	0.56	-1.7
3,758,474	+		PFLU_RS16570	0.63	-1.1
3,758,474	+		PFLU_RS16570	0.63	-1.3
3,758,474	+		PFLU_RS16570	0.63	-2.4
3,758,474	+		PFLU_RS16570	0.63	+1.5
3,758,475	-		PFLU_RS16570	0.64	+0.6
3,758,475	-		PFLU_RS16570	0.64	+0.0
3,758,492	+		PFLU_RS16570	0.67	+0.8
3,758,492	+		PFLU_RS16570	0.67	-0.0
3,758,493	-		PFLU_RS16570	0.68	+0.7
3,758,493	-		PFLU_RS16570	0.68	-0.2
3,758,493	-		PFLU_RS16570	0.68	+1.2
3,758,550	+		PFLU_RS16570	0.80	-1.0
3,758,550	+		PFLU_RS16570	0.80	-0.4
3,758,550	+		PFLU_RS16570	0.80	+0.9
3,758,551	-		PFLU_RS16570	0.80	+1.0
3,758,551	-		PFLU_RS16570	0.80	-0.0
3,758,559	-		PFLU_RS16570	0.82	-1.6
3,758,631	-				-2.2
3,758,631	-				+0.3
3,758,631	-				+0.6
3,758,633	-				-1.5
3,758,633	-				-0.2
3,758,656	+				-0.9
3,758,657	-				-0.1
3,758,657	-				-1.4
3,758,657	-				+0.5
3,758,674	+				-1.0
3,758,675	-				-0.4
3,758,691	+				-0.5
3,758,700	+				-1.9
3,758,700	+				-1.0
3,758,700	+				+1.3
3,758,700	+				-0.4
3,758,701	-				-0.4
3,758,701	-				-1.4
3,758,701	-				-0.7
3,758,703	+				-0.1
3,758,722	+				+0.0
3,758,801	-				+1.3
3,758,869	+				-2.2
3,758,890	+				+0.6
3,758,891	-				-1.0
3,758,939	+		PFLU_RS16575	0.20	+1.6
3,758,939	+		PFLU_RS16575	0.20	+0.6
3,758,940	-		PFLU_RS16575	0.21	-1.4
3,758,940	-		PFLU_RS16575	0.21	+0.5
3,759,077	+		PFLU_RS16575	0.52	-0.7
3,759,077	+		PFLU_RS16575	0.52	-0.4
3,759,077	+		PFLU_RS16575	0.52	+0.1
3,759,077	+		PFLU_RS16575	0.52	-0.8
3,759,077	+		PFLU_RS16575	0.52	+0.0
3,759,077	+		PFLU_RS16575	0.52	+0.1
3,759,077	+		PFLU_RS16575	0.52	-1.0
3,759,078	-		PFLU_RS16575	0.53	-3.0
3,759,078	-		PFLU_RS16575	0.53	-0.4
3,759,078	-		PFLU_RS16575	0.53	-0.7
3,759,078	-		PFLU_RS16575	0.53	+0.2
3,759,078	-		PFLU_RS16575	0.53	+1.2
3,759,078	-		PFLU_RS16575	0.53	-0.6
3,759,078	-		PFLU_RS16575	0.53	+0.0
3,759,078	-		PFLU_RS16575	0.53	+0.3
3,759,078	-		PFLU_RS16575	0.53	-0.0
3,759,078	-		PFLU_RS16575	0.53	+0.0
3,759,078	-		PFLU_RS16575	0.53	+0.3
3,759,128	+		PFLU_RS16575	0.64	+0.0
3,759,128	+		PFLU_RS16575	0.64	-0.2
3,759,129	-		PFLU_RS16575	0.65	+0.8
3,759,129	-		PFLU_RS16575	0.65	-0.2
3,759,129	-		PFLU_RS16575	0.65	-1.2
3,759,132	+		PFLU_RS16575	0.65	-1.0
3,759,132	+		PFLU_RS16575	0.65	-1.1
3,759,133	-		PFLU_RS16575	0.66	-0.3
3,759,133	-		PFLU_RS16575	0.66	-1.2
3,759,169	+		PFLU_RS16575	0.74	+1.1
3,759,170	-		PFLU_RS16575	0.74	-0.6
3,759,170	-		PFLU_RS16575	0.74	-1.6
3,759,170	-		PFLU_RS16575	0.74	+0.2
3,759,239	-				-0.9
3,759,239	-				-0.4
3,759,240	+				-0.2
3,759,240	+				-0.6
3,759,241	-				+0.2
3,759,268	+				-0.4
3,759,269	-				-0.3
3,759,279	-				+0.6
3,759,279	-				-0.3
3,759,279	-				-3.0
3,759,288	-				+0.6
3,759,311	+				+0.4
3,759,311	+				+0.9
3,759,311	+				-1.0
3,759,312	-				-0.1
3,759,312	-				-0.9
3,759,312	-				-0.1
3,759,312	-				-1.0
3,759,312	-				+1.6
3,759,312	-				+1.2
3,759,344	+		PFLU_RS16580	0.12	-0.4
3,759,344	+		PFLU_RS16580	0.12	-0.4
3,759,344	+		PFLU_RS16580	0.12	-0.3
3,759,344	+		PFLU_RS16580	0.12	+0.6
3,759,345	-		PFLU_RS16580	0.13	-1.4
3,759,497	+		PFLU_RS16580	0.83	-1.2
3,759,498	-		PFLU_RS16580	0.84	-0.5
3,759,498	-		PFLU_RS16580	0.84	-2.2
3,759,498	-		PFLU_RS16580	0.84	-1.4
3,759,523	+				-0.4
3,759,606	+				+1.1
3,759,606	+				-1.2
3,759,606	+				+1.0
3,759,606	+				-0.1
3,759,606	+				+0.0
3,759,606	+				+0.8
3,759,607	-				+0.0
3,759,607	-				-2.6
3,759,607	-				-0.4
3,759,607	-				-0.3
3,759,694	+				+0.0
3,759,694	+				-1.2
3,759,694	+				+1.0
3,759,694	+				+1.9
3,759,695	-				+3.2
3,759,719	-		PFLU_RS16585	0.11	+0.0
3,759,719	-		PFLU_RS16585	0.11	-1.4
3,759,760	+		PFLU_RS16585	0.21	+1.3
3,759,760	+		PFLU_RS16585	0.21	-0.7
3,759,852	+		PFLU_RS16585	0.41	+0.9
3,759,853	-		PFLU_RS16585	0.41	-0.4
3,759,881	+		PFLU_RS16585	0.48	+1.3
3,759,881	+		PFLU_RS16585	0.48	-0.9
3,759,881	+		PFLU_RS16585	0.48	+0.9
3,759,881	+		PFLU_RS16585	0.48	+0.8
3,759,881	+		PFLU_RS16585	0.48	-0.4
3,759,882	-		PFLU_RS16585	0.48	-1.4
3,759,882	-		PFLU_RS16585	0.48	-1.3
3,759,882	-		PFLU_RS16585	0.48	-1.0
3,759,882	-		PFLU_RS16585	0.48	-1.4
3,759,883	+		PFLU_RS16585	0.48	+0.6
3,759,917	+		PFLU_RS16585	0.56	-0.1
3,759,917	+		PFLU_RS16585	0.56	+0.8
3,759,918	-		PFLU_RS16585	0.56	-0.4
3,759,918	-		PFLU_RS16585	0.56	+0.4
3,759,918	-		PFLU_RS16585	0.56	+0.3
3,759,918	-		PFLU_RS16585	0.56	-0.8
3,759,918	-		PFLU_RS16585	0.56	+0.4
3,760,021	+		PFLU_RS16585	0.79	+0.1
3,760,022	-		PFLU_RS16585	0.79	-0.5
3,760,022	-		PFLU_RS16585	0.79	+0.5
3,760,196	+				-0.1
3,760,196	+				+1.2
3,760,196	+				-0.2
3,760,196	+				-0.2
3,760,196	+				+1.6
3,760,196	+				-1.1
3,760,196	+				+0.3
3,760,197	-				-1.0
3,760,197	-				+0.5
3,760,253	+				-0.2
3,760,253	+				+0.0
3,760,253	+				+0.6
3,760,254	-				-0.4
3,760,271	+				-0.4
3,760,271	+				-0.1
3,760,271	+				+0.6
3,760,271	+				+0.1
3,760,271	+				-0.2
3,760,271	+				-0.5
3,760,272	-				+0.0
3,760,272	-				-2.3
3,760,272	-				-0.4
3,760,272	-				-0.2
3,760,272	-				+2.1
3,760,272	-				+0.0
3,760,272	-				-0.4
3,760,272	-				-0.1
3,760,272	-				-0.7
3,760,272	-				-2.9
3,760,338	+		PFLU_RS16590	0.11	-1.4
3,760,339	-		PFLU_RS16590	0.11	-0.4
3,760,339	-		PFLU_RS16590	0.11	+0.8
3,760,404	+		PFLU_RS16590	0.18	+0.2
3,760,404	+		PFLU_RS16590	0.18	-1.0
3,760,404	+		PFLU_RS16590	0.18	+1.6
3,760,405	-		PFLU_RS16590	0.19	+1.0
3,760,419	-		PFLU_RS16590	0.20	-2.6
3,760,447	+		PFLU_RS16590	0.23	+0.5
3,760,465	+		PFLU_RS16590	0.25	-2.2
3,760,466	-		PFLU_RS16590	0.25	+1.6
3,760,466	-		PFLU_RS16590	0.25	+0.0
3,760,479	+		PFLU_RS16590	0.27	+0.1