Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08660

Experiment: Trisodium citrate 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS08650 and PFLU_RS08655 are separated by 86 nucleotidesPFLU_RS08655 and PFLU_RS08660 overlap by 4 nucleotidesPFLU_RS08660 and PFLU_RS08665 overlap by 4 nucleotidesPFLU_RS08665 and PFLU_RS08670 are separated by 3 nucleotides PFLU_RS08650: PFLU_RS08650 - heme exporter protein CcmB, at 1,925,160 to 1,925,828 _RS08650 PFLU_RS08655: PFLU_RS08655 - heme ABC transporter permease, at 1,925,915 to 1,926,670 _RS08655 PFLU_RS08660: PFLU_RS08660 - heme exporter protein CcmD, at 1,926,667 to 1,926,843 _RS08660 PFLU_RS08665: PFLU_RS08665 - cytochrome c maturation protein CcmE, at 1,926,840 to 1,927,295 _RS08665 PFLU_RS08670: PFLU_RS08670 - heme lyase CcmF/NrfE family subunit, at 1,927,299 to 1,929,287 _RS08670 Position (kb) 1926 1927Strain fitness (log2 ratio) -3 -2 -1 0 1at 1925.667 kb on + strand, within PFLU_RS08650at 1925.667 kb on + strand, within PFLU_RS08650at 1925.792 kb on + strandat 1925.792 kb on + strandat 1925.792 kb on + strandat 1925.792 kb on + strandat 1925.793 kb on - strandat 1925.793 kb on - strandat 1925.794 kb on + strandat 1925.826 kb on + strandat 1925.826 kb on + strandat 1925.848 kb on + strandat 1925.848 kb on + strandat 1925.848 kb on + strandat 1925.848 kb on + strandat 1925.848 kb on + strandat 1925.848 kb on + strandat 1925.848 kb on + strandat 1925.848 kb on + strandat 1925.848 kb on + strandat 1925.849 kb on - strandat 1925.855 kb on + strandat 1925.855 kb on + strandat 1925.856 kb on - strandat 1925.856 kb on - strandat 1925.856 kb on - strandat 1925.862 kb on + strandat 1925.871 kb on + strandat 1925.871 kb on + strandat 1925.871 kb on + strandat 1925.872 kb on - strandat 1925.872 kb on - strandat 1925.960 kb on + strandat 1925.960 kb on + strandat 1925.961 kb on - strandat 1925.961 kb on - strandat 1925.961 kb on - strandat 1926.089 kb on + strand, within PFLU_RS08655at 1926.089 kb on + strand, within PFLU_RS08655at 1926.089 kb on + strand, within PFLU_RS08655at 1926.089 kb on + strand, within PFLU_RS08655at 1926.089 kb on + strand, within PFLU_RS08655at 1926.089 kb on + strand, within PFLU_RS08655at 1926.089 kb on + strand, within PFLU_RS08655at 1926.089 kb on + strand, within PFLU_RS08655at 1926.090 kb on - strand, within PFLU_RS08655at 1926.090 kb on - strand, within PFLU_RS08655at 1926.090 kb on - strand, within PFLU_RS08655at 1926.090 kb on - strand, within PFLU_RS08655at 1926.090 kb on - strand, within PFLU_RS08655at 1926.092 kb on - strand, within PFLU_RS08655at 1926.128 kb on + strand, within PFLU_RS08655at 1926.128 kb on + strand, within PFLU_RS08655at 1926.129 kb on - strand, within PFLU_RS08655at 1926.129 kb on - strand, within PFLU_RS08655at 1926.332 kb on + strand, within PFLU_RS08655at 1926.718 kb on + strand, within PFLU_RS08660at 1926.718 kb on + strand, within PFLU_RS08660at 1926.718 kb on + strand, within PFLU_RS08660at 1926.718 kb on + strand, within PFLU_RS08660at 1926.718 kb on + strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.734 kb on - strand, within PFLU_RS08660at 1926.855 kb on - strandat 1927.100 kb on + strand, within PFLU_RS08665at 1927.100 kb on + strand, within PFLU_RS08665at 1927.100 kb on + strand, within PFLU_RS08665at 1927.100 kb on + strand, within PFLU_RS08665at 1927.100 kb on + strand, within PFLU_RS08665at 1927.100 kb on + strand, within PFLU_RS08665at 1927.100 kb on + strand, within PFLU_RS08665at 1927.101 kb on - strand, within PFLU_RS08665at 1927.101 kb on - strand, within PFLU_RS08665at 1927.101 kb on - strand, within PFLU_RS08665at 1927.101 kb on - strand, within PFLU_RS08665at 1927.101 kb on - strand, within PFLU_RS08665at 1927.101 kb on - strand, within PFLU_RS08665at 1927.221 kb on + strand, within PFLU_RS08665at 1927.221 kb on + strand, within PFLU_RS08665at 1927.221 kb on + strand, within PFLU_RS08665at 1927.221 kb on + strand, within PFLU_RS08665at 1927.221 kb on + strand, within PFLU_RS08665at 1927.222 kb on - strand, within PFLU_RS08665at 1927.222 kb on - strand, within PFLU_RS08665at 1927.222 kb on - strand, within PFLU_RS08665at 1927.293 kb on + strandat 1927.293 kb on + strandat 1927.293 kb on + strandat 1927.316 kb on + strandat 1927.488 kb on + strandat 1927.488 kb on + strandat 1927.488 kb on + strandat 1927.488 kb on + strandat 1927.489 kb on - strandat 1927.489 kb on - strandat 1927.489 kb on - strandat 1927.489 kb on - strandat 1927.489 kb on - strandat 1927.489 kb on - strandat 1927.521 kb on + strand, within PFLU_RS08670at 1927.521 kb on + strand, within PFLU_RS08670at 1927.521 kb on + strand, within PFLU_RS08670at 1927.521 kb on + strand, within PFLU_RS08670at 1927.521 kb on + strand, within PFLU_RS08670at 1927.522 kb on - strand, within PFLU_RS08670at 1927.522 kb on - strand, within PFLU_RS08670at 1927.522 kb on - strand, within PFLU_RS08670at 1927.522 kb on - strand, within PFLU_RS08670at 1927.533 kb on - strand, within PFLU_RS08670at 1927.557 kb on + strand, within PFLU_RS08670at 1927.557 kb on + strand, within PFLU_RS08670at 1927.560 kb on + strand, within PFLU_RS08670at 1927.560 kb on + strand, within PFLU_RS08670at 1927.560 kb on + strand, within PFLU_RS08670at 1927.560 kb on + strand, within PFLU_RS08670at 1927.561 kb on - strand, within PFLU_RS08670at 1927.561 kb on - strand, within PFLU_RS08670

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate 10 mM (C)
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1,925,667 + PFLU_RS08650 0.76 -2.7
1,925,667 + PFLU_RS08650 0.76 -0.4
1,925,792 + -2.4
1,925,792 + -1.6
1,925,792 + -0.6
1,925,792 + -1.4
1,925,793 - -0.9
1,925,793 - -2.2
1,925,794 + +0.6
1,925,826 + -0.6
1,925,826 + -0.2
1,925,848 + -0.9
1,925,848 + +0.1
1,925,848 + -0.6
1,925,848 + -2.2
1,925,848 + -1.0
1,925,848 + -0.1
1,925,848 + -0.4
1,925,848 + -1.6
1,925,848 + -1.0
1,925,849 - -1.8
1,925,855 + -1.0
1,925,855 + -0.9
1,925,856 - +0.2
1,925,856 - +0.5
1,925,856 - -1.4
1,925,862 + -0.5
1,925,871 + -0.2
1,925,871 + -0.3
1,925,871 + +0.6
1,925,872 - -1.5
1,925,872 - +1.6
1,925,960 + -2.2
1,925,960 + -0.6
1,925,961 - -0.8
1,925,961 - -1.0
1,925,961 - +0.2
1,926,089 + PFLU_RS08655 0.23 -3.3
1,926,089 + PFLU_RS08655 0.23 -1.8
1,926,089 + PFLU_RS08655 0.23 -1.6
1,926,089 + PFLU_RS08655 0.23 -1.4
1,926,089 + PFLU_RS08655 0.23 -1.4
1,926,089 + PFLU_RS08655 0.23 -2.4
1,926,089 + PFLU_RS08655 0.23 -0.0
1,926,089 + PFLU_RS08655 0.23 -1.2
1,926,090 - PFLU_RS08655 0.23 -1.6
1,926,090 - PFLU_RS08655 0.23 -3.1
1,926,090 - PFLU_RS08655 0.23 -1.4
1,926,090 - PFLU_RS08655 0.23 -0.0
1,926,090 - PFLU_RS08655 0.23 -3.3
1,926,092 - PFLU_RS08655 0.23 -2.5
1,926,128 + PFLU_RS08655 0.28 +0.1
1,926,128 + PFLU_RS08655 0.28 -2.7
1,926,129 - PFLU_RS08655 0.28 -2.5
1,926,129 - PFLU_RS08655 0.28 -3.2
1,926,332 + PFLU_RS08655 0.55 -2.7
1,926,718 + PFLU_RS08660 0.29 -1.7
1,926,718 + PFLU_RS08660 0.29 -2.5
1,926,718 + PFLU_RS08660 0.29 -2.7
1,926,718 + PFLU_RS08660 0.29 -1.7
1,926,718 + PFLU_RS08660 0.29 -1.0
1,926,719 - PFLU_RS08660 0.29 -2.4
1,926,719 - PFLU_RS08660 0.29 -1.8
1,926,719 - PFLU_RS08660 0.29 -1.4
1,926,719 - PFLU_RS08660 0.29 -0.0
1,926,719 - PFLU_RS08660 0.29 -2.9
1,926,734 - PFLU_RS08660 0.38 -0.9
1,926,855 - -2.4
1,927,100 + PFLU_RS08665 0.57 -2.5
1,927,100 + PFLU_RS08665 0.57 -0.3
1,927,100 + PFLU_RS08665 0.57 -0.0
1,927,100 + PFLU_RS08665 0.57 -0.6
1,927,100 + PFLU_RS08665 0.57 -1.9
1,927,100 + PFLU_RS08665 0.57 -1.8
1,927,100 + PFLU_RS08665 0.57 -1.1
1,927,101 - PFLU_RS08665 0.57 -2.2
1,927,101 - PFLU_RS08665 0.57 -2.5
1,927,101 - PFLU_RS08665 0.57 +0.2
1,927,101 - PFLU_RS08665 0.57 -2.9
1,927,101 - PFLU_RS08665 0.57 -1.8
1,927,101 - PFLU_RS08665 0.57 -2.8
1,927,221 + PFLU_RS08665 0.84 -1.8
1,927,221 + PFLU_RS08665 0.84 -0.3
1,927,221 + PFLU_RS08665 0.84 -2.7
1,927,221 + PFLU_RS08665 0.84 -0.3
1,927,221 + PFLU_RS08665 0.84 +0.2
1,927,222 - PFLU_RS08665 0.84 -2.7
1,927,222 - PFLU_RS08665 0.84 -0.8
1,927,222 - PFLU_RS08665 0.84 -2.8
1,927,293 + +0.3
1,927,293 + +0.7
1,927,293 + -0.5
1,927,316 + -2.6
1,927,488 + -2.2
1,927,488 + -0.1
1,927,488 + -1.3
1,927,488 + -3.2
1,927,489 - -2.0
1,927,489 - -2.7
1,927,489 - -2.6
1,927,489 - -3.0
1,927,489 - -1.9
1,927,489 - +1.0
1,927,521 + PFLU_RS08670 0.11 -2.0
1,927,521 + PFLU_RS08670 0.11 -1.6
1,927,521 + PFLU_RS08670 0.11 -2.1
1,927,521 + PFLU_RS08670 0.11 -1.8
1,927,521 + PFLU_RS08670 0.11 -0.0
1,927,522 - PFLU_RS08670 0.11 -2.2
1,927,522 - PFLU_RS08670 0.11 -2.5
1,927,522 - PFLU_RS08670 0.11 -1.0
1,927,522 - PFLU_RS08670 0.11 -3.2
1,927,533 - PFLU_RS08670 0.12 -1.1
1,927,557 + PFLU_RS08670 0.13 -2.5
1,927,557 + PFLU_RS08670 0.13 -1.7
1,927,560 + PFLU_RS08670 0.13 -1.5
1,927,560 + PFLU_RS08670 0.13 -0.3
1,927,560 + PFLU_RS08670 0.13 -1.6
1,927,560 + PFLU_RS08670 0.13 -2.5
1,927,561 - PFLU_RS08670 0.13 -3.2
1,927,561 - PFLU_RS08670 0.13 -1.1

Or see this region's nucleotide sequence