Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2892

Experiment: HNL05_cps7_1MOI

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	HNL05_cps7_1MOI
3,611,056	+				-1.2
3,611,152	-				-1.4
3,611,179	+				-0.3
3,611,199	-				-1.1
3,611,215	+		BT2891	0.13	-0.7
3,611,218	-		BT2891	0.14	-1.5
3,611,269	+		BT2891	0.35	-2.4
3,611,269	+		BT2891	0.35	-2.1
3,611,270	-		BT2891	0.36	-2.5
3,611,270	-		BT2891	0.36	+0.9
3,611,289	+		BT2891	0.44	-3.5
3,611,303	-		BT2891	0.49	+1.3
3,611,337	+		BT2891	0.63	-1.7
3,611,360	+		BT2891	0.73	-0.4
3,611,360	+		BT2891	0.73	+1.0
3,611,360	+		BT2891	0.73	-1.6
3,611,361	-		BT2891	0.73	-0.8
3,611,361	-		BT2891	0.73	+0.7
3,611,361	-		BT2891	0.73	+0.2
3,611,361	-		BT2891	0.73	-2.1
3,611,362	+		BT2891	0.74	-0.5
3,611,362	+		BT2891	0.74	+1.2
3,611,362	+		BT2891	0.74	+1.4
3,611,363	-		BT2891	0.74	-0.5
3,611,392	+		BT2891	0.86	-0.3
3,611,393	-		BT2891	0.86	-3.5
3,611,452	-				-0.2
3,611,458	+				-1.8
3,611,458	+				-0.9
3,611,500	+				-1.3
3,611,500	+				-1.2
3,611,516	-				+1.6
3,611,551	-				+0.2
3,611,578	-				-0.8
3,611,621	+				-1.3
3,611,621	+				-1.1
3,611,622	-				-1.1
3,611,622	-				-2.5
3,611,626	+				-0.3
3,611,644	-				-1.8
3,611,737	+				-0.8
3,611,738	-				+0.7
3,611,738	-				-2.8
3,611,752	-				-1.6
3,611,759	-				-2.3
3,611,784	-				-1.6
3,611,799	-				-0.1
3,611,799	-				+0.2
3,611,800	+				-0.8
3,611,800	+				-2.1
3,611,853	+				-1.4
3,611,854	-				-3.2
3,611,867	-				-1.3
3,611,873	-				-0.4
3,611,874	+				-0.3
3,611,874	+				-0.1
3,611,875	-				-1.4
3,611,875	-				-0.4
3,611,875	-				-0.6
3,611,883	+				-0.6
3,611,920	-				-1.0
3,611,936	-				-0.7
3,611,947	-				-1.9
3,611,966	+				-1.8
3,611,967	-				-2.6
3,611,967	-				-2.2
3,611,967	-				-1.6
3,611,967	-				+0.2
3,611,984	+				-2.1
3,611,985	-				-1.5
3,611,985	-				-1.5
3,611,988	-				-2.3
3,612,054	-				-0.3
3,612,141	-		BT2892	0.12	+2.1
3,612,161	+		BT2892	0.13	-0.1
3,612,161	+		BT2892	0.13	-1.1
3,612,162	-		BT2892	0.13	-3.9
3,612,177	+		BT2892	0.14	-1.8
3,612,177	+		BT2892	0.14	+1.7
3,612,178	-		BT2892	0.14	-0.0
3,612,189	-		BT2892	0.15	-1.6
3,612,201	+		BT2892	0.16	-1.1
3,612,202	-		BT2892	0.16	-1.2
3,612,207	-		BT2892	0.16	+0.6
3,612,207	-		BT2892	0.16	-1.4
3,612,208	+		BT2892	0.16	-4.3
3,612,209	-		BT2892	0.16	-0.9
3,612,209	-		BT2892	0.16	-2.0
3,612,261	-		BT2892	0.19	-2.1
3,612,332	+		BT2892	0.23	-1.2
3,612,374	+		BT2892	0.26	+2.2
3,612,396	-		BT2892	0.27	-0.8
3,612,402	-		BT2892	0.27	+1.6
3,612,406	+		BT2892	0.28	-1.3
3,612,407	-		BT2892	0.28	+0.2
3,612,436	-		BT2892	0.29	-1.6
3,612,436	-		BT2892	0.29	-1.1
3,612,447	+		BT2892	0.30	-0.6
3,612,448	-		BT2892	0.30	-0.9
3,612,448	-		BT2892	0.30	+1.2
3,612,448	-		BT2892	0.30	+0.0
3,612,495	-		BT2892	0.33	-0.3
3,612,495	-		BT2892	0.33	+2.8
3,612,500	+		BT2892	0.33	-1.9
3,612,513	+		BT2892	0.34	-2.2
3,612,518	+		BT2892	0.34	+0.2
3,612,538	-		BT2892	0.35	-0.8
3,612,549	+		BT2892	0.36	+1.3
3,612,622	-		BT2892	0.40	-1.4
3,612,639	-		BT2892	0.41	-1.2
3,612,641	+		BT2892	0.41	-0.8
3,612,641	+		BT2892	0.41	+1.9
3,612,641	+		BT2892	0.41	+2.4
3,612,641	+		BT2892	0.41	-1.8
3,612,678	+		BT2892	0.43	-0.9
3,612,678	+		BT2892	0.43	-1.8
3,612,679	-		BT2892	0.43	-2.6
3,612,681	-		BT2892	0.44	-1.9
3,612,695	-		BT2892	0.44	+0.7
3,612,702	+		BT2892	0.45	-0.1
3,612,723	+		BT2892	0.46	-0.8
3,612,723	+		BT2892	0.46	-1.9
3,612,724	-		BT2892	0.46	-0.6
3,612,734	-		BT2892	0.47	-2.3
3,612,734	-		BT2892	0.47	+1.1
3,612,837	-		BT2892	0.53	+1.7
3,612,837	-		BT2892	0.53	+0.2
3,612,844	-		BT2892	0.53	+0.1
3,612,844	-		BT2892	0.53	+0.1
3,612,850	+		BT2892	0.53	+0.6
3,612,863	+		BT2892	0.54	-0.1
3,612,915	-		BT2892	0.57	-1.4
3,612,919	-		BT2892	0.58	-1.8
3,612,980	+		BT2892	0.61	-2.4
3,612,980	+		BT2892	0.61	-1.3
3,613,032	-		BT2892	0.64	-3.8
3,613,032	-		BT2892	0.64	-2.6
3,613,032	-		BT2892	0.64	-1.7
3,613,032	-		BT2892	0.64	-1.7
3,613,032	-		BT2892	0.64	+2.1
3,613,034	-		BT2892	0.64	-1.5
3,613,047	-		BT2892	0.65	+1.2
3,613,054	+		BT2892	0.65	-1.2
3,613,132	+		BT2892	0.70	+0.6
3,613,137	-		BT2892	0.70	+1.1
3,613,172	+		BT2892	0.72	-2.3
3,613,173	-		BT2892	0.72	-2.8
3,613,173	-		BT2892	0.72	+0.2
3,613,175	+		BT2892	0.72	+0.7
3,613,190	+		BT2892	0.73	-1.9
3,613,204	-		BT2892	0.74	-0.6
3,613,226	-		BT2892	0.75	+1.2
3,613,229	+		BT2892	0.76	-1.8
3,613,229	+		BT2892	0.76	+1.2
3,613,277	+		BT2892	0.78	-1.3
3,613,319	+		BT2892	0.81	-1.2
3,613,319	+		BT2892	0.81	+0.3
3,613,319	+		BT2892	0.81	+0.5
3,613,355	+		BT2892	0.83	-2.0
3,613,359	-		BT2892	0.83	-1.3
3,613,370	+		BT2892	0.84	-2.3
3,613,394	+		BT2892	0.85	-1.7
3,613,395	-		BT2892	0.85	-1.4
3,613,400	-		BT2892	0.86	-1.5
3,613,409	-		BT2892	0.86	-2.8
3,613,424	+		BT2892	0.87	-1.9
3,613,424	+		BT2892	0.87	+0.5
3,613,424	+		BT2892	0.87	+2.2
3,613,540	+				+2.2
3,613,540	+				-1.3
3,613,541	-				-2.6
3,613,596	-				+0.3
3,613,651	+				-1.9
3,613,652	-				-1.1
3,613,652	-				-1.6
3,613,652	-				+1.0
3,613,664	-				-0.3
3,613,665	+				-0.3
3,613,694	+				-1.5
3,613,702	+				-1.1
3,613,722	-				+0.9
3,613,745	+				-0.0
3,613,783	+				-2.6
3,613,845	+				-3.5
3,613,846	-				-2.7
3,613,850	+				-2.7
3,613,851	-				-0.8
3,613,855	+				-0.8
3,613,856	-				-0.5
3,613,862	-				-1.0
3,613,868	+				-1.1
3,613,871	-				-0.8
3,613,871	-				-1.1
3,613,886	-				-0.7
3,613,887	+				-1.2
3,613,984	+		BT2893	0.14	-2.8
3,613,999	+		BT2893	0.15	-0.6
3,613,999	+		BT2893	0.15	-1.4
3,614,058	-		BT2893	0.18	-1.1
3,614,062	-		BT2893	0.18	+2.2
3,614,067	+		BT2893	0.18	+0.1
3,614,067	+		BT2893	0.18	-2.6
3,614,067	+		BT2893	0.18	-0.2
3,614,067	+		BT2893	0.18	-4.1
3,614,067	+		BT2893	0.18	-0.2
3,614,068	-		BT2893	0.18	-0.7
3,614,068	-		BT2893	0.18	-2.1
3,614,068	-		BT2893	0.18	+0.1
3,614,069	+		BT2893	0.18	-0.3
3,614,070	-		BT2893	0.18	-1.2
3,614,070	-		BT2893	0.18	+1.2
3,614,070	-		BT2893	0.18	-1.6
3,614,070	-		BT2893	0.18	-1.6
3,614,177	-		BT2893	0.24	-2.3
3,614,186	+		BT2893	0.25	+0.9
3,614,187	-		BT2893	0.25	-0.3
3,614,187	-		BT2893	0.25	+0.1
3,614,213	+		BT2893	0.26	-1.5
3,614,217	+		BT2893	0.26	-2.9
3,614,252	-		BT2893	0.28	+1.2
3,614,254	+		BT2893	0.28	-2.3
3,614,254	+		BT2893	0.28	+0.7
3,614,328	+		BT2893	0.32	-2.8
3,614,352	+		BT2893	0.33	-0.2
3,614,356	+		BT2893	0.34	-0.3
3,614,359	+		BT2893	0.34	-2.3
3,614,361	+		BT2893	0.34	-0.2
3,614,362	-		BT2893	0.34	-1.1
3,614,435	+		BT2893	0.38	-0.2
3,614,437	+		BT2893	0.38	-0.3
3,614,455	+		BT2893	0.39	-0.3
3,614,455	+		BT2893	0.39	-2.2
3,614,456	-		BT2893	0.39	-1.4
3,614,456	-		BT2893	0.39	-0.3
3,614,543	-		BT2893	0.44	-0.4
3,614,575	+		BT2893	0.45	-0.8
3,614,586	+		BT2893	0.46	-3.4
3,614,586	+		BT2893	0.46	-3.6
3,614,587	-		BT2893	0.46	-1.6
3,614,614	+		BT2893	0.47	-2.6