Experiment: 4-Hydroxybenzoic Acid 2 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01675 and PFLU_RS01680 overlap by 2 nucleotides PFLU_RS01680 and PFLU_RS30350 are separated by 139 nucleotides PFLU_RS30350 and PFLU_RS01685 are separated by 81 nucleotides
PFLU_RS01675: PFLU_RS01675 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 372,782 to 373,237
_RS01675
PFLU_RS01680: PFLU_RS01680 - hypothetical protein, at 373,236 to 373,676
_RS01680
PFLU_RS30350: PFLU_RS30350 - hypothetical protein, at 373,816 to 374,127
_RS30350
PFLU_RS01685: PFLU_RS01685 - nitrogen regulation protein NR(I), at 374,209 to 375,645
_RS01685
Position (kb) 373
374
375 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 372.908 kb on + strand, within PFLU_RS01675 at 372.908 kb on + strand, within PFLU_RS01675 at 372.909 kb on - strand, within PFLU_RS01675 at 372.909 kb on - strand, within PFLU_RS01675 at 373.078 kb on - strand, within PFLU_RS01675 at 373.087 kb on - strand, within PFLU_RS01675 at 373.183 kb on + strand, within PFLU_RS01675 at 373.271 kb on + strand at 373.300 kb on + strand, within PFLU_RS01680 at 373.300 kb on + strand, within PFLU_RS01680 at 373.300 kb on + strand, within PFLU_RS01680 at 373.300 kb on + strand, within PFLU_RS01680 at 373.300 kb on + strand, within PFLU_RS01680 at 373.301 kb on - strand, within PFLU_RS01680 at 373.301 kb on - strand, within PFLU_RS01680 at 373.301 kb on - strand, within PFLU_RS01680 at 373.301 kb on - strand, within PFLU_RS01680 at 373.301 kb on - strand, within PFLU_RS01680 at 373.301 kb on - strand, within PFLU_RS01680 at 373.301 kb on - strand, within PFLU_RS01680 at 373.301 kb on - strand, within PFLU_RS01680 at 373.486 kb on + strand, within PFLU_RS01680 at 373.487 kb on - strand, within PFLU_RS01680 at 373.487 kb on - strand, within PFLU_RS01680 at 373.674 kb on + strand at 373.674 kb on + strand at 373.674 kb on + strand at 373.674 kb on + strand at 373.674 kb on + strand at 373.674 kb on + strand at 373.674 kb on + strand at 373.674 kb on + strand at 373.675 kb on - strand at 373.675 kb on - strand at 373.675 kb on - strand at 373.675 kb on - strand at 373.675 kb on - strand at 373.675 kb on - strand at 373.675 kb on - strand at 373.730 kb on - strand at 373.747 kb on + strand at 373.747 kb on + strand at 373.747 kb on + strand at 373.747 kb on + strand at 373.747 kb on + strand at 373.747 kb on + strand at 373.747 kb on + strand at 373.747 kb on + strand at 373.747 kb on + strand at 373.747 kb on + strand at 373.747 kb on + strand at 373.747 kb on + strand at 373.747 kb on + strand at 373.747 kb on + strand at 373.748 kb on - strand at 373.748 kb on - strand at 373.748 kb on - strand at 373.748 kb on - strand at 373.748 kb on - strand at 373.748 kb on - strand at 373.748 kb on - strand at 373.748 kb on - strand at 373.748 kb on - strand at 373.748 kb on - strand at 373.748 kb on - strand at 373.748 kb on - strand at 373.748 kb on - strand at 373.748 kb on - strand at 373.748 kb on - strand at 373.760 kb on + strand at 373.760 kb on + strand at 373.760 kb on + strand at 373.760 kb on + strand at 373.761 kb on - strand at 373.761 kb on - strand at 373.761 kb on - strand at 373.787 kb on + strand at 373.787 kb on + strand at 373.832 kb on + strand at 373.858 kb on + strand, within PFLU_RS30350 at 373.883 kb on + strand, within PFLU_RS30350 at 373.883 kb on + strand, within PFLU_RS30350 at 373.883 kb on + strand, within PFLU_RS30350 at 373.883 kb on + strand, within PFLU_RS30350 at 373.883 kb on + strand, within PFLU_RS30350 at 373.883 kb on + strand, within PFLU_RS30350 at 373.883 kb on + strand, within PFLU_RS30350 at 373.884 kb on - strand, within PFLU_RS30350 at 373.884 kb on - strand, within PFLU_RS30350 at 373.884 kb on - strand, within PFLU_RS30350 at 373.884 kb on - strand, within PFLU_RS30350 at 373.884 kb on - strand, within PFLU_RS30350 at 373.884 kb on - strand, within PFLU_RS30350 at 373.884 kb on - strand, within PFLU_RS30350 at 373.884 kb on - strand, within PFLU_RS30350 at 373.884 kb on - strand, within PFLU_RS30350 at 373.884 kb on - strand, within PFLU_RS30350 at 373.884 kb on - strand, within PFLU_RS30350 at 374.010 kb on + strand, within PFLU_RS30350 at 374.011 kb on - strand, within PFLU_RS30350 at 374.011 kb on - strand, within PFLU_RS30350 at 374.011 kb on - strand, within PFLU_RS30350 at 374.011 kb on - strand, within PFLU_RS30350 at 374.125 kb on + strand at 374.125 kb on + strand at 374.125 kb on + strand at 374.125 kb on + strand at 374.125 kb on + strand at 374.125 kb on + strand at 374.125 kb on + strand at 374.125 kb on + strand at 374.125 kb on + strand at 374.125 kb on + strand at 374.153 kb on - strand at 374.153 kb on - strand at 374.153 kb on - strand at 374.153 kb on - strand at 374.153 kb on - strand at 374.153 kb on - strand at 374.153 kb on - strand at 374.153 kb on - strand at 374.153 kb on - strand at 374.153 kb on - strand at 374.153 kb on - strand at 374.155 kb on - strand at 374.155 kb on - strand at 374.155 kb on - strand at 374.155 kb on - strand at 374.155 kb on - strand at 374.155 kb on - strand at 374.155 kb on - strand at 374.155 kb on - strand at 374.283 kb on + strand at 374.283 kb on + strand at 374.283 kb on + strand at 374.284 kb on - strand at 374.284 kb on - strand at 374.284 kb on - strand at 374.284 kb on - strand at 374.286 kb on + strand at 374.286 kb on + strand at 374.287 kb on - strand at 374.287 kb on - strand at 374.287 kb on - strand at 374.603 kb on + strand, within PFLU_RS01685 at 374.604 kb on - strand, within PFLU_RS01685 at 374.604 kb on - strand, within PFLU_RS01685 at 374.721 kb on + strand, within PFLU_RS01685 at 374.722 kb on - strand, within PFLU_RS01685 at 374.722 kb on - strand, within PFLU_RS01685 at 374.858 kb on + strand, within PFLU_RS01685
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid 2 mM (C) remove 372,908 + PFLU_RS01675 0.28 +0.3 372,908 + PFLU_RS01675 0.28 +0.9 372,909 - PFLU_RS01675 0.28 -0.9 372,909 - PFLU_RS01675 0.28 -1.2 373,078 - PFLU_RS01675 0.65 +0.4 373,087 - PFLU_RS01675 0.67 +0.4 373,183 + PFLU_RS01675 0.88 -1.1 373,271 + +0.4 373,300 + PFLU_RS01680 0.15 -0.9 373,300 + PFLU_RS01680 0.15 -2.9 373,300 + PFLU_RS01680 0.15 -0.3 373,300 + PFLU_RS01680 0.15 -3.1 373,300 + PFLU_RS01680 0.15 -2.1 373,301 - PFLU_RS01680 0.15 -0.4 373,301 - PFLU_RS01680 0.15 -0.8 373,301 - PFLU_RS01680 0.15 +1.3 373,301 - PFLU_RS01680 0.15 +0.7 373,301 - PFLU_RS01680 0.15 -1.7 373,301 - PFLU_RS01680 0.15 -1.9 373,301 - PFLU_RS01680 0.15 +0.6 373,301 - PFLU_RS01680 0.15 -0.7 373,486 + PFLU_RS01680 0.57 +0.0 373,487 - PFLU_RS01680 0.57 -2.5 373,487 - PFLU_RS01680 0.57 -0.9 373,674 + +0.2 373,674 + -0.2 373,674 + +0.5 373,674 + +0.6 373,674 + -1.8 373,674 + +1.1 373,674 + -0.1 373,674 + -0.9 373,675 - +0.5 373,675 - -0.3 373,675 - -1.3 373,675 - -2.1 373,675 - -1.1 373,675 - +0.3 373,675 - +0.7 373,730 - -0.4 373,747 + -0.7 373,747 + -1.4 373,747 + +0.0 373,747 + +0.3 373,747 + -1.4 373,747 + -0.3 373,747 + -2.6 373,747 + +1.1 373,747 + -1.6 373,747 + +1.2 373,747 + -0.9 373,747 + -0.1 373,747 + +2.5 373,747 + +0.6 373,748 - -1.7 373,748 - -2.2 373,748 - -0.0 373,748 - -0.7 373,748 - -0.5 373,748 - +0.4 373,748 - +1.9 373,748 - +1.6 373,748 - +0.8 373,748 - -1.6 373,748 - -1.6 373,748 - -0.6 373,748 - +0.6 373,748 - -0.7 373,748 - -1.1 373,760 + +0.8 373,760 + -1.1 373,760 + +1.5 373,760 + +1.0 373,761 - -0.5 373,761 - -2.0 373,761 - -1.1 373,787 + +0.9 373,787 + +0.9 373,832 + +1.0 373,858 + PFLU_RS30350 0.13 +0.6 373,883 + PFLU_RS30350 0.21 +0.6 373,883 + PFLU_RS30350 0.21 -0.9 373,883 + PFLU_RS30350 0.21 -1.4 373,883 + PFLU_RS30350 0.21 +1.2 373,883 + PFLU_RS30350 0.21 +0.3 373,883 + PFLU_RS30350 0.21 -1.9 373,883 + PFLU_RS30350 0.21 +1.3 373,884 - PFLU_RS30350 0.22 -0.3 373,884 - PFLU_RS30350 0.22 +2.4 373,884 - PFLU_RS30350 0.22 +1.9 373,884 - PFLU_RS30350 0.22 +0.9 373,884 - PFLU_RS30350 0.22 -0.4 373,884 - PFLU_RS30350 0.22 -1.6 373,884 - PFLU_RS30350 0.22 -1.9 373,884 - PFLU_RS30350 0.22 +0.7 373,884 - PFLU_RS30350 0.22 +1.0 373,884 - PFLU_RS30350 0.22 -1.3 373,884 - PFLU_RS30350 0.22 -0.1 374,010 + PFLU_RS30350 0.62 -0.1 374,011 - PFLU_RS30350 0.62 +0.2 374,011 - PFLU_RS30350 0.62 -0.4 374,011 - PFLU_RS30350 0.62 -1.1 374,011 - PFLU_RS30350 0.62 -0.1 374,125 + -0.7 374,125 + +0.8 374,125 + -0.5 374,125 + +0.9 374,125 + +2.1 374,125 + +0.5 374,125 + -2.4 374,125 + +0.1 374,125 + -2.1 374,125 + +0.1 374,153 - -1.0 374,153 - -0.1 374,153 - +0.9 374,153 - +0.3 374,153 - +1.1 374,153 - -2.9 374,153 - +2.0 374,153 - +0.9 374,153 - +1.0 374,153 - -3.2 374,153 - -0.8 374,155 - -0.2 374,155 - -2.4 374,155 - -0.9 374,155 - -0.0 374,155 - -0.3 374,155 - -0.0 374,155 - +1.5 374,155 - -1.4 374,283 + +0.7 374,283 + -0.7 374,283 + +0.3 374,284 - +0.8 374,284 - -0.4 374,284 - -1.4 374,284 - -2.6 374,286 + -0.7 374,286 + -0.9 374,287 - +0.3 374,287 - -0.6 374,287 - +0.7 374,603 + PFLU_RS01685 0.27 +1.9 374,604 - PFLU_RS01685 0.27 +0.9 374,604 - PFLU_RS01685 0.27 +0.3 374,721 + PFLU_RS01685 0.36 -0.1 374,722 - PFLU_RS01685 0.36 -1.3 374,722 - PFLU_RS01685 0.36 +0.4 374,858 + PFLU_RS01685 0.45 -0.5
Or see this region's nucleotide sequence