Experiment: 4-Hydroxybenzoic Acid 2 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS25860 and PFLU_RS25865 are separated by 106 nucleotides PFLU_RS25865 and PFLU_RS25870 are separated by 20 nucleotides PFLU_RS25870 and PFLU_RS25875 are separated by 28 nucleotides PFLU_RS25875 and PFLU_RS25880 overlap by 4 nucleotides
PFLU_RS25860: PFLU_RS25860 - 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE, at 5,776,093 to 5,776,743
_RS25860
PFLU_RS25865: PFLU_RS25865 - YhbY family RNA-binding protein, at 5,776,850 to 5,777,158
_RS25865
PFLU_RS25870: PFLU_RS25870 - hypothetical protein, at 5,777,179 to 5,777,583
_RS25870
PFLU_RS25875: PFLU_RS25875 - transcription elongation factor GreA, at 5,777,612 to 5,778,088
_RS25875
PFLU_RS25880: PFLU_RS25880 - carbamoyl-phosphate synthase large subunit, at 5,778,085 to 5,781,306
_RS25880
Position (kb) 5777
5778 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5776.761 kb on - strand at 5776.850 kb on - strand at 5776.850 kb on - strand at 5776.881 kb on - strand, within PFLU_RS25865 at 5776.881 kb on - strand, within PFLU_RS25865 at 5776.881 kb on - strand, within PFLU_RS25865 at 5776.881 kb on - strand, within PFLU_RS25865 at 5776.881 kb on - strand, within PFLU_RS25865 at 5776.927 kb on + strand, within PFLU_RS25865 at 5776.928 kb on - strand, within PFLU_RS25865 at 5776.928 kb on - strand, within PFLU_RS25865 at 5776.928 kb on - strand, within PFLU_RS25865 at 5776.928 kb on - strand, within PFLU_RS25865 at 5777.103 kb on - strand, within PFLU_RS25865 at 5777.142 kb on - strand at 5777.143 kb on - strand at 5777.143 kb on - strand at 5777.143 kb on - strand at 5777.143 kb on - strand at 5777.143 kb on - strand at 5777.143 kb on - strand at 5777.143 kb on - strand at 5777.143 kb on - strand at 5777.143 kb on - strand at 5777.143 kb on - strand at 5777.157 kb on - strand at 5777.157 kb on - strand at 5777.157 kb on - strand at 5777.157 kb on - strand at 5777.171 kb on - strand at 5777.171 kb on - strand at 5777.171 kb on - strand at 5777.227 kb on + strand, within PFLU_RS25870 at 5777.227 kb on + strand, within PFLU_RS25870 at 5777.227 kb on + strand, within PFLU_RS25870 at 5777.227 kb on + strand, within PFLU_RS25870 at 5777.227 kb on + strand, within PFLU_RS25870 at 5777.227 kb on + strand, within PFLU_RS25870 at 5777.227 kb on + strand, within PFLU_RS25870 at 5777.227 kb on + strand, within PFLU_RS25870 at 5777.227 kb on + strand, within PFLU_RS25870 at 5777.228 kb on - strand, within PFLU_RS25870 at 5777.228 kb on - strand, within PFLU_RS25870 at 5777.228 kb on - strand, within PFLU_RS25870 at 5777.228 kb on - strand, within PFLU_RS25870 at 5777.228 kb on - strand, within PFLU_RS25870 at 5777.228 kb on - strand, within PFLU_RS25870 at 5777.228 kb on - strand, within PFLU_RS25870 at 5777.228 kb on - strand, within PFLU_RS25870 at 5777.228 kb on - strand, within PFLU_RS25870 at 5777.228 kb on - strand, within PFLU_RS25870 at 5777.228 kb on - strand, within PFLU_RS25870 at 5777.228 kb on - strand, within PFLU_RS25870 at 5777.230 kb on - strand, within PFLU_RS25870 at 5777.254 kb on + strand, within PFLU_RS25870 at 5777.255 kb on - strand, within PFLU_RS25870 at 5777.255 kb on - strand, within PFLU_RS25870 at 5777.264 kb on + strand, within PFLU_RS25870 at 5777.264 kb on + strand, within PFLU_RS25870 at 5777.264 kb on + strand, within PFLU_RS25870 at 5777.264 kb on + strand, within PFLU_RS25870 at 5777.265 kb on - strand, within PFLU_RS25870 at 5777.265 kb on - strand, within PFLU_RS25870 at 5777.265 kb on - strand, within PFLU_RS25870 at 5777.265 kb on - strand, within PFLU_RS25870 at 5777.265 kb on - strand, within PFLU_RS25870 at 5777.265 kb on - strand, within PFLU_RS25870 at 5777.272 kb on + strand, within PFLU_RS25870 at 5777.272 kb on + strand, within PFLU_RS25870 at 5777.272 kb on + strand, within PFLU_RS25870 at 5777.272 kb on + strand, within PFLU_RS25870 at 5777.272 kb on + strand, within PFLU_RS25870 at 5777.272 kb on + strand, within PFLU_RS25870 at 5777.273 kb on - strand, within PFLU_RS25870 at 5777.273 kb on - strand, within PFLU_RS25870 at 5777.273 kb on - strand, within PFLU_RS25870 at 5777.273 kb on - strand, within PFLU_RS25870 at 5777.273 kb on - strand, within PFLU_RS25870 at 5777.318 kb on + strand, within PFLU_RS25870 at 5777.318 kb on + strand, within PFLU_RS25870 at 5777.318 kb on + strand, within PFLU_RS25870 at 5777.318 kb on + strand, within PFLU_RS25870 at 5777.318 kb on + strand, within PFLU_RS25870 at 5777.318 kb on + strand, within PFLU_RS25870 at 5777.318 kb on + strand, within PFLU_RS25870 at 5777.318 kb on + strand, within PFLU_RS25870 at 5777.318 kb on + strand, within PFLU_RS25870 at 5777.318 kb on + strand, within PFLU_RS25870 at 5777.318 kb on + strand, within PFLU_RS25870 at 5777.319 kb on - strand, within PFLU_RS25870 at 5777.319 kb on - strand, within PFLU_RS25870 at 5777.319 kb on - strand, within PFLU_RS25870 at 5777.319 kb on - strand, within PFLU_RS25870 at 5777.319 kb on - strand, within PFLU_RS25870 at 5777.319 kb on - strand, within PFLU_RS25870 at 5777.319 kb on - strand, within PFLU_RS25870 at 5777.319 kb on - strand, within PFLU_RS25870 at 5777.319 kb on - strand, within PFLU_RS25870 at 5777.319 kb on - strand, within PFLU_RS25870 at 5777.319 kb on - strand, within PFLU_RS25870 at 5777.319 kb on - strand, within PFLU_RS25870 at 5777.319 kb on - strand, within PFLU_RS25870 at 5777.333 kb on + strand, within PFLU_RS25870 at 5777.333 kb on + strand, within PFLU_RS25870 at 5777.333 kb on + strand, within PFLU_RS25870 at 5777.333 kb on + strand, within PFLU_RS25870 at 5777.333 kb on + strand, within PFLU_RS25870 at 5777.333 kb on + strand, within PFLU_RS25870 at 5777.333 kb on + strand, within PFLU_RS25870 at 5777.333 kb on + strand, within PFLU_RS25870 at 5777.333 kb on + strand, within PFLU_RS25870 at 5777.334 kb on - strand, within PFLU_RS25870 at 5777.334 kb on - strand, within PFLU_RS25870 at 5777.334 kb on - strand, within PFLU_RS25870 at 5777.334 kb on - strand, within PFLU_RS25870 at 5777.334 kb on - strand, within PFLU_RS25870 at 5777.334 kb on - strand, within PFLU_RS25870 at 5777.334 kb on - strand, within PFLU_RS25870 at 5777.365 kb on - strand, within PFLU_RS25870 at 5777.461 kb on + strand, within PFLU_RS25870 at 5777.462 kb on - strand, within PFLU_RS25870 at 5777.529 kb on + strand, within PFLU_RS25870 at 5777.529 kb on + strand, within PFLU_RS25870 at 5777.530 kb on - strand, within PFLU_RS25870 at 5777.530 kb on - strand, within PFLU_RS25870 at 5777.530 kb on - strand, within PFLU_RS25870 at 5777.530 kb on - strand, within PFLU_RS25870 at 5777.530 kb on - strand, within PFLU_RS25870 at 5777.775 kb on + strand, within PFLU_RS25875 at 5777.775 kb on + strand, within PFLU_RS25875 at 5777.776 kb on - strand, within PFLU_RS25875 at 5777.851 kb on + strand, within PFLU_RS25875 at 5777.884 kb on + strand, within PFLU_RS25875 at 5777.884 kb on + strand, within PFLU_RS25875 at 5777.885 kb on - strand, within PFLU_RS25875 at 5777.894 kb on + strand, within PFLU_RS25875 at 5777.947 kb on - strand, within PFLU_RS25875 at 5777.947 kb on - strand, within PFLU_RS25875 at 5778.014 kb on + strand, within PFLU_RS25875 at 5778.014 kb on + strand, within PFLU_RS25875 at 5778.014 kb on + strand, within PFLU_RS25875 at 5778.015 kb on - strand, within PFLU_RS25875 at 5778.015 kb on - strand, within PFLU_RS25875 at 5778.015 kb on - strand, within PFLU_RS25875 at 5778.015 kb on - strand, within PFLU_RS25875 at 5778.015 kb on - strand, within PFLU_RS25875 at 5778.015 kb on - strand, within PFLU_RS25875 at 5778.015 kb on - strand, within PFLU_RS25875 at 5778.015 kb on - strand, within PFLU_RS25875 at 5778.078 kb on + strand at 5778.078 kb on + strand at 5778.078 kb on + strand at 5778.078 kb on + strand at 5778.079 kb on - strand at 5778.106 kb on + strand at 5778.106 kb on + strand at 5778.106 kb on + strand at 5778.107 kb on - strand at 5778.107 kb on - strand at 5778.107 kb on - strand at 5778.107 kb on - strand at 5778.107 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid 2 mM (C) remove 5,776,761 - +2.9 5,776,850 - +2.4 5,776,850 - +1.8 5,776,881 - PFLU_RS25865 0.10 +2.7 5,776,881 - PFLU_RS25865 0.10 +3.8 5,776,881 - PFLU_RS25865 0.10 +2.4 5,776,881 - PFLU_RS25865 0.10 +2.5 5,776,881 - PFLU_RS25865 0.10 +4.1 5,776,927 + PFLU_RS25865 0.25 +0.8 5,776,928 - PFLU_RS25865 0.25 +3.7 5,776,928 - PFLU_RS25865 0.25 +1.4 5,776,928 - PFLU_RS25865 0.25 +3.1 5,776,928 - PFLU_RS25865 0.25 +2.5 5,777,103 - PFLU_RS25865 0.82 -0.2 5,777,142 - +0.9 5,777,143 - -1.3 5,777,143 - +0.7 5,777,143 - +2.5 5,777,143 - +1.1 5,777,143 - -1.6 5,777,143 - +2.0 5,777,143 - +1.1 5,777,143 - -1.5 5,777,143 - -0.2 5,777,143 - +2.0 5,777,157 - +2.0 5,777,157 - +2.7 5,777,157 - -1.6 5,777,157 - +1.1 5,777,171 - +0.9 5,777,171 - +2.3 5,777,171 - +2.1 5,777,227 + PFLU_RS25870 0.12 +0.8 5,777,227 + PFLU_RS25870 0.12 -0.5 5,777,227 + PFLU_RS25870 0.12 +3.8 5,777,227 + PFLU_RS25870 0.12 +0.2 5,777,227 + PFLU_RS25870 0.12 +3.6 5,777,227 + PFLU_RS25870 0.12 +0.2 5,777,227 + PFLU_RS25870 0.12 +1.8 5,777,227 + PFLU_RS25870 0.12 -1.2 5,777,227 + PFLU_RS25870 0.12 +2.0 5,777,228 - PFLU_RS25870 0.12 -0.2 5,777,228 - PFLU_RS25870 0.12 +1.3 5,777,228 - PFLU_RS25870 0.12 +0.6 5,777,228 - PFLU_RS25870 0.12 -0.2 5,777,228 - PFLU_RS25870 0.12 +1.5 5,777,228 - PFLU_RS25870 0.12 +0.7 5,777,228 - PFLU_RS25870 0.12 +2.8 5,777,228 - PFLU_RS25870 0.12 +0.0 5,777,228 - PFLU_RS25870 0.12 +2.8 5,777,228 - PFLU_RS25870 0.12 -1.8 5,777,228 - PFLU_RS25870 0.12 +2.4 5,777,228 - PFLU_RS25870 0.12 +0.7 5,777,230 - PFLU_RS25870 0.13 +1.8 5,777,254 + PFLU_RS25870 0.19 -0.5 5,777,255 - PFLU_RS25870 0.19 -0.9 5,777,255 - PFLU_RS25870 0.19 -2.3 5,777,264 + PFLU_RS25870 0.21 +0.2 5,777,264 + PFLU_RS25870 0.21 -0.8 5,777,264 + PFLU_RS25870 0.21 +0.8 5,777,264 + PFLU_RS25870 0.21 -0.5 5,777,265 - PFLU_RS25870 0.21 -0.7 5,777,265 - PFLU_RS25870 0.21 +0.6 5,777,265 - PFLU_RS25870 0.21 +1.5 5,777,265 - PFLU_RS25870 0.21 +0.2 5,777,265 - PFLU_RS25870 0.21 -0.1 5,777,265 - PFLU_RS25870 0.21 +1.6 5,777,272 + PFLU_RS25870 0.23 +0.1 5,777,272 + PFLU_RS25870 0.23 -1.6 5,777,272 + PFLU_RS25870 0.23 +0.2 5,777,272 + PFLU_RS25870 0.23 -1.9 5,777,272 + PFLU_RS25870 0.23 +2.1 5,777,272 + PFLU_RS25870 0.23 +2.4 5,777,273 - PFLU_RS25870 0.23 -0.4 5,777,273 - PFLU_RS25870 0.23 -0.5 5,777,273 - PFLU_RS25870 0.23 -0.3 5,777,273 - PFLU_RS25870 0.23 +1.0 5,777,273 - PFLU_RS25870 0.23 +0.8 5,777,318 + PFLU_RS25870 0.34 +1.0 5,777,318 + PFLU_RS25870 0.34 +1.8 5,777,318 + PFLU_RS25870 0.34 -1.2 5,777,318 + PFLU_RS25870 0.34 +0.2 5,777,318 + PFLU_RS25870 0.34 -1.2 5,777,318 + PFLU_RS25870 0.34 +2.4 5,777,318 + PFLU_RS25870 0.34 +1.4 5,777,318 + PFLU_RS25870 0.34 +0.8 5,777,318 + PFLU_RS25870 0.34 +0.7 5,777,318 + PFLU_RS25870 0.34 -0.3 5,777,318 + PFLU_RS25870 0.34 -1.0 5,777,319 - PFLU_RS25870 0.35 -0.0 5,777,319 - PFLU_RS25870 0.35 +0.0 5,777,319 - PFLU_RS25870 0.35 -2.1 5,777,319 - PFLU_RS25870 0.35 +1.8 5,777,319 - PFLU_RS25870 0.35 -2.4 5,777,319 - PFLU_RS25870 0.35 -2.9 5,777,319 - PFLU_RS25870 0.35 +0.1 5,777,319 - PFLU_RS25870 0.35 +1.2 5,777,319 - PFLU_RS25870 0.35 -0.2 5,777,319 - PFLU_RS25870 0.35 +1.3 5,777,319 - PFLU_RS25870 0.35 +0.5 5,777,319 - PFLU_RS25870 0.35 -0.3 5,777,319 - PFLU_RS25870 0.35 +1.7 5,777,333 + PFLU_RS25870 0.38 +0.5 5,777,333 + PFLU_RS25870 0.38 -1.2 5,777,333 + PFLU_RS25870 0.38 +0.2 5,777,333 + PFLU_RS25870 0.38 -1.3 5,777,333 + PFLU_RS25870 0.38 +1.8 5,777,333 + PFLU_RS25870 0.38 +0.8 5,777,333 + PFLU_RS25870 0.38 -1.2 5,777,333 + PFLU_RS25870 0.38 +1.6 5,777,333 + PFLU_RS25870 0.38 +1.1 5,777,334 - PFLU_RS25870 0.38 -1.0 5,777,334 - PFLU_RS25870 0.38 +1.0 5,777,334 - PFLU_RS25870 0.38 +2.2 5,777,334 - PFLU_RS25870 0.38 +0.8 5,777,334 - PFLU_RS25870 0.38 +0.5 5,777,334 - PFLU_RS25870 0.38 +0.5 5,777,334 - PFLU_RS25870 0.38 -0.4 5,777,365 - PFLU_RS25870 0.46 +0.8 5,777,461 + PFLU_RS25870 0.70 +0.2 5,777,462 - PFLU_RS25870 0.70 +2.1 5,777,529 + PFLU_RS25870 0.86 +2.4 5,777,529 + PFLU_RS25870 0.86 +1.6 5,777,530 - PFLU_RS25870 0.87 +1.5 5,777,530 - PFLU_RS25870 0.87 +0.8 5,777,530 - PFLU_RS25870 0.87 -1.7 5,777,530 - PFLU_RS25870 0.87 +0.8 5,777,530 - PFLU_RS25870 0.87 -0.4 5,777,775 + PFLU_RS25875 0.34 -0.8 5,777,775 + PFLU_RS25875 0.34 +2.8 5,777,776 - PFLU_RS25875 0.34 +1.8 5,777,851 + PFLU_RS25875 0.50 -1.0 5,777,884 + PFLU_RS25875 0.57 +0.2 5,777,884 + PFLU_RS25875 0.57 -0.5 5,777,885 - PFLU_RS25875 0.57 +1.8 5,777,894 + PFLU_RS25875 0.59 +1.2 5,777,947 - PFLU_RS25875 0.70 -0.5 5,777,947 - PFLU_RS25875 0.70 +2.3 5,778,014 + PFLU_RS25875 0.84 +1.8 5,778,014 + PFLU_RS25875 0.84 +1.8 5,778,014 + PFLU_RS25875 0.84 +0.2 5,778,015 - PFLU_RS25875 0.84 +2.4 5,778,015 - PFLU_RS25875 0.84 -0.5 5,778,015 - PFLU_RS25875 0.84 -1.5 5,778,015 - PFLU_RS25875 0.84 +0.7 5,778,015 - PFLU_RS25875 0.84 -2.3 5,778,015 - PFLU_RS25875 0.84 -0.8 5,778,015 - PFLU_RS25875 0.84 -0.2 5,778,015 - PFLU_RS25875 0.84 -0.8 5,778,078 + -0.2 5,778,078 + -0.8 5,778,078 + +0.4 5,778,078 + -1.2 5,778,079 - +0.2 5,778,106 + -0.2 5,778,106 + -1.5 5,778,106 + -0.2 5,778,107 - +1.7 5,778,107 - -1.6 5,778,107 - +0.5 5,778,107 - +1.6 5,778,107 - +0.2
Or see this region's nucleotide sequence