Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS17010

Experiment: 4-Hydroxybenzoic Acid 2 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxybenzoic Acid 2 mM (C)
3,855,539	-		PFLU_RS17000	0.76	+0.3
3,855,539	-		PFLU_RS17000	0.76	-1.6
3,855,539	-		PFLU_RS17000	0.76	+0.9
3,855,539	-		PFLU_RS17000	0.76	-1.2
3,855,539	-		PFLU_RS17000	0.76	+0.1
3,855,539	-		PFLU_RS17000	0.76	-0.0
3,855,539	-		PFLU_RS17000	0.76	-2.5
3,855,539	-		PFLU_RS17000	0.76	+1.2
3,855,539	-		PFLU_RS17000	0.76	-0.6
3,855,539	-		PFLU_RS17000	0.76	+1.2
3,855,539	-		PFLU_RS17000	0.76	-0.2
3,855,539	-		PFLU_RS17000	0.76	+2.2
3,855,539	-		PFLU_RS17000	0.76	+1.7
3,855,539	-		PFLU_RS17000	0.76	+0.3
3,855,539	-		PFLU_RS17000	0.76	-0.0
3,855,539	-		PFLU_RS17000	0.76	-1.4
3,855,539	-		PFLU_RS17000	0.76	-0.8
3,855,539	-		PFLU_RS17000	0.76	+1.2
3,855,539	-		PFLU_RS17000	0.76	-1.6
3,855,539	-		PFLU_RS17000	0.76	-0.4
3,855,542	+		PFLU_RS17000	0.76	+1.6
3,855,542	+		PFLU_RS17000	0.76	+0.2
3,855,542	+		PFLU_RS17000	0.76	-0.4
3,855,542	+		PFLU_RS17000	0.76	-0.4
3,855,542	+		PFLU_RS17000	0.76	-1.8
3,855,543	-		PFLU_RS17000	0.76	+1.0
3,855,543	-		PFLU_RS17000	0.76	-0.8
3,855,543	-		PFLU_RS17000	0.76	-1.1
3,855,543	-		PFLU_RS17000	0.76	+1.7
3,855,543	-		PFLU_RS17000	0.76	+0.7
3,855,543	-		PFLU_RS17000	0.76	-2.2
3,855,589	+		PFLU_RS17000	0.80	-0.3
3,855,589	+		PFLU_RS17000	0.80	-1.2
3,855,589	+		PFLU_RS17000	0.80	-1.6
3,855,590	-		PFLU_RS17000	0.80	-0.4
3,855,590	-		PFLU_RS17000	0.80	+1.2
3,855,590	-		PFLU_RS17000	0.80	+0.6
3,855,774	-				+0.2
3,855,902	+		PFLU_RS17005	0.20	-1.2
3,855,903	-		PFLU_RS17005	0.20	+2.3
3,855,960	-		PFLU_RS17005	0.29	-0.8
3,856,106	+		PFLU_RS17005	0.53	-1.2
3,856,106	+		PFLU_RS17005	0.53	+1.2
3,856,107	-		PFLU_RS17005	0.54	-0.2
3,856,107	-		PFLU_RS17005	0.54	-2.5
3,856,107	-		PFLU_RS17005	0.54	-1.6
3,856,235	+		PFLU_RS17005	0.75	-1.8
3,856,235	+		PFLU_RS17005	0.75	+0.5
3,856,235	+		PFLU_RS17005	0.75	-2.3
3,856,235	+		PFLU_RS17005	0.75	+0.2
3,856,236	-		PFLU_RS17005	0.75	+1.2
3,856,236	-		PFLU_RS17005	0.75	-1.6
3,856,236	-		PFLU_RS17005	0.75	-1.4
3,856,236	-		PFLU_RS17005	0.75	-1.2
3,856,425	+				-0.3
3,856,426	-				+0.2
3,856,427	+				+0.6
3,856,427	+				-0.4
3,856,427	+				+1.4
3,856,427	+				-2.7
3,856,428	-				-1.4
3,856,428	-				+2.3
3,856,428	-				-1.8
3,856,498	+				-0.6
3,856,498	+				+1.6
3,856,498	+				-2.2
3,856,498	+				+0.7
3,856,498	+				-1.0
3,856,498	+				+0.6
3,856,498	+				+0.4
3,856,498	+				+3.1
3,856,498	+				+0.2
3,856,498	+				+0.4
3,856,498	+				+1.0
3,856,498	+				-2.0
3,856,498	+				-0.0
3,856,498	+				+0.3
3,856,498	+				+0.2
3,856,498	+				+0.2
3,856,498	+				-0.6
3,856,498	+				+1.4
3,856,498	+				+1.7
3,856,498	+				-0.3
3,856,498	+				+2.7
3,856,499	-				+0.5
3,856,499	-				-0.6
3,856,499	-				-3.7
3,856,499	-				+0.5
3,856,499	-				-2.0
3,856,499	-				-1.2
3,856,499	-				+1.2
3,856,499	-				-2.3
3,856,499	-				+0.7
3,856,499	-				+0.8
3,856,499	-				-2.3
3,856,499	-				-0.1
3,856,499	-				-0.8
3,856,499	-				+0.6
3,856,499	-				+0.3
3,856,499	-				+0.6
3,856,499	-				-2.2
3,856,499	-				+1.5
3,856,499	-				-1.5
3,856,499	-				-1.2
3,856,499	-				-2.0
3,856,499	-				-0.8
3,856,499	-				-0.4
3,856,499	-				-1.2
3,856,499	-				-0.9
3,856,499	-				-1.4
3,856,499	-				-0.9
3,856,499	-				+0.2
3,856,500	+				+0.2
3,856,500	+				+2.7
3,856,500	+				-1.5
3,856,500	+				+1.2
3,856,500	+				-1.9
3,856,500	+				-0.8
3,856,500	+				+0.6
3,856,500	+				+1.2
3,856,500	+				+0.6
3,856,500	+				-1.8
3,856,500	+				+0.4
3,856,500	+				+1.5
3,856,500	+				+0.4
3,856,500	+				+0.5
3,856,500	+				+1.1
3,856,500	+				-0.2
3,856,500	+				+1.0
3,856,500	+				-2.2
3,856,500	+				-0.3
3,856,500	+				-0.4
3,856,500	+				+1.5
3,856,500	+				+2.4
3,856,500	+				-0.5
3,856,500	+				+0.8
3,856,501	-				-0.2
3,856,501	-				+0.3
3,856,501	-				-0.7
3,856,501	-				+1.4
3,856,501	-				-1.5
3,856,501	-				-1.8
3,856,501	-				+0.2
3,856,501	-				-0.6
3,856,501	-				+0.6
3,856,501	-				-0.4
3,856,501	-				+1.3
3,856,501	-				-1.2
3,856,648	+		PFLU_RS17010	0.13	+0.3
3,856,648	+		PFLU_RS17010	0.13	-0.8
3,856,649	-		PFLU_RS17010	0.13	-3.1
3,856,697	+		PFLU_RS17010	0.18	-2.4
3,856,697	+		PFLU_RS17010	0.18	-1.6
3,856,697	+		PFLU_RS17010	0.18	+0.0
3,856,697	+		PFLU_RS17010	0.18	+1.5
3,856,697	+		PFLU_RS17010	0.18	+0.2
3,856,697	+		PFLU_RS17010	0.18	-2.2
3,856,698	-		PFLU_RS17010	0.18	+0.2
3,856,698	-		PFLU_RS17010	0.18	+0.2
3,856,965	-		PFLU_RS17010	0.49	-0.3
3,857,187	-		PFLU_RS17010	0.75	-1.6
3,857,187	-		PFLU_RS17010	0.75	-0.4
3,857,224	+		PFLU_RS17010	0.79	+0.2
3,857,224	+		PFLU_RS17010	0.79	+1.5
3,857,224	+		PFLU_RS17010	0.79	-0.8
3,857,224	+		PFLU_RS17010	0.79	-0.8
3,857,224	+		PFLU_RS17010	0.79	-1.6
3,857,224	+		PFLU_RS17010	0.79	+0.3
3,857,224	+		PFLU_RS17010	0.79	+1.7
3,857,224	+		PFLU_RS17010	0.79	-0.9
3,857,224	+		PFLU_RS17010	0.79	+1.2
3,857,225	-		PFLU_RS17010	0.79	-0.3
3,857,225	-		PFLU_RS17010	0.79	-1.8
3,857,225	-		PFLU_RS17010	0.79	+0.8
3,857,225	-		PFLU_RS17010	0.79	-1.4
3,857,225	-		PFLU_RS17010	0.79	+1.0
3,857,225	-		PFLU_RS17010	0.79	+0.9
3,857,225	-		PFLU_RS17010	0.79	+0.7
3,857,225	-		PFLU_RS17010	0.79	+0.5
3,857,225	-		PFLU_RS17010	0.79	+1.9
3,857,225	-		PFLU_RS17010	0.79	+1.2
3,857,225	-		PFLU_RS17010	0.79	-1.8
3,857,304	-		PFLU_RS17010	0.89	+0.0
3,857,318	-				+0.2
3,857,318	-				+0.2
3,857,411	+				-1.8
3,857,411	+				-0.2
3,857,411	+				-0.7
3,857,412	-				+1.1
3,857,412	-				+1.8
3,857,412	-				-2.6
3,857,412	-				-2.6
3,857,412	-				-0.6
3,857,412	-				-0.5
3,857,574	-				-0.1
3,857,575	+				+1.0
3,857,575	+				-1.2
3,857,575	+				+0.5
3,857,575	+				+1.2
3,857,575	+				+1.9
3,857,575	+				+1.1
3,857,575	+				+1.2
3,857,575	+				-0.2
3,857,575	+				+2.4
3,857,576	-				+0.5
3,857,576	-				+0.2
3,857,576	-				+0.7
3,857,576	-				+0.4
3,857,576	-				-2.5
3,857,585	-		PFLU_RS17015	0.11	+1.4
3,857,603	+		PFLU_RS17015	0.14	+0.8
3,857,631	+		PFLU_RS17015	0.20	-0.8
3,857,631	+		PFLU_RS17015	0.20	-2.4
3,857,632	-		PFLU_RS17015	0.21	+0.5
3,857,632	-		PFLU_RS17015	0.21	+1.2
3,857,728	+		PFLU_RS17015	0.41	+1.2
3,857,740	+		PFLU_RS17015	0.44	+2.5
3,857,741	-		PFLU_RS17015	0.44	+1.4
3,857,741	-		PFLU_RS17015	0.44	-1.4
3,857,832	-		PFLU_RS17015	0.63	+0.7
3,857,888	+		PFLU_RS17015	0.75	-1.4
3,857,889	-		PFLU_RS17015	0.75	-3.2
3,857,890	+		PFLU_RS17015	0.75	+2.2
3,857,891	-		PFLU_RS17015	0.76	+0.4
3,857,891	-		PFLU_RS17015	0.76	+2.0
3,857,891	-		PFLU_RS17015	0.76	-2.3
3,857,891	-		PFLU_RS17015	0.76	-0.8
3,857,891	-		PFLU_RS17015	0.76	-0.6
3,857,953	+		PFLU_RS17015	0.89	-0.2
3,857,953	+		PFLU_RS17015	0.89	-2.5
3,857,953	+		PFLU_RS17015	0.89	+0.7
3,857,953	+		PFLU_RS17015	0.89	+0.7
3,857,954	-		PFLU_RS17015	0.89	+0.7
3,857,954	-		PFLU_RS17015	0.89	-2.7
3,857,954	-		PFLU_RS17015	0.89	-1.4
3,857,954	-		PFLU_RS17015	0.89	+0.2
3,857,954	-		PFLU_RS17015	0.89	+1.2
3,857,954	-		PFLU_RS17015	0.89	-1.8
3,858,057	+				+0.7
3,858,093	+				-2.3
3,858,093	+				+1.8
3,858,093	+				-0.3
3,858,093	+				-2.0
3,858,093	+				-2.0
3,858,093	+				-1.4
3,858,093	+				+0.3
3,858,094	-				-2.9
3,858,094	-				-1.6
3,858,094	-				+0.7
3,858,094	-				+1.8
3,858,094	-				-0.4
3,858,094	-				-1.1
3,858,099	+				+0.2
3,858,133	+				-2.5
3,858,133	+				+0.2
3,858,133	+				-0.4
3,858,133	+				-0.8
3,858,144	+				-0.1
3,858,225	+				+2.2
3,858,271	+				-1.2