Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS31670

Experiment: 4-Hydroxybenzoic Acid 2 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxybenzoic Acid 2 mM (C)
3,756,575	+		PFLU_RS30870	0.50	+1.1
3,756,575	+		PFLU_RS30870	0.50	+0.8
3,756,576	-		PFLU_RS30870	0.50	+1.0
3,756,602	-		PFLU_RS30870	0.54	+0.7
3,756,602	-		PFLU_RS30870	0.54	+2.2
3,756,631	-		PFLU_RS30870	0.58	+0.0
3,756,638	-		PFLU_RS30870	0.59	-1.0
3,756,735	+		PFLU_RS30870	0.72	-1.3
3,756,735	+		PFLU_RS30870	0.72	-0.6
3,756,735	+		PFLU_RS30870	0.72	-1.6
3,756,735	+		PFLU_RS30870	0.72	+0.5
3,756,735	+		PFLU_RS30870	0.72	-2.2
3,756,735	+		PFLU_RS30870	0.72	+0.2
3,756,735	+		PFLU_RS30870	0.72	-2.4
3,756,736	-		PFLU_RS30870	0.72	+1.0
3,756,736	-		PFLU_RS30870	0.72	+0.7
3,756,736	-		PFLU_RS30870	0.72	+0.3
3,756,736	-		PFLU_RS30870	0.72	+1.8
3,756,736	-		PFLU_RS30870	0.72	-1.0
3,756,736	-		PFLU_RS30870	0.72	-2.2
3,756,755	+		PFLU_RS30870	0.75	-2.7
3,756,763	+		PFLU_RS30870	0.76	+1.0
3,756,763	+		PFLU_RS30870	0.76	-0.8
3,756,771	-		PFLU_RS30870	0.77	-2.9
3,756,771	-		PFLU_RS30870	0.77	-2.3
3,756,771	-		PFLU_RS30870	0.77	+0.4
3,756,799	-		PFLU_RS30870	0.81	-0.8
3,756,828	+		PFLU_RS30870	0.85	-0.8
3,756,828	+		PFLU_RS30870	0.85	-0.2
3,756,828	+		PFLU_RS30870	0.85	-0.7
3,756,828	+		PFLU_RS30870	0.85	+2.0
3,756,828	+		PFLU_RS30870	0.85	-0.6
3,756,828	+		PFLU_RS30870	0.85	-0.8
3,756,828	+		PFLU_RS30870	0.85	+2.0
3,756,828	+		PFLU_RS30870	0.85	+1.7
3,756,829	-		PFLU_RS30870	0.85	+1.0
3,756,832	+		PFLU_RS30870	0.85	-1.8
3,756,832	+		PFLU_RS30870	0.85	-2.3
3,756,901	+				-0.2
3,756,902	-				+0.7
3,756,911	+				+1.9
3,757,039	-				-1.6
3,757,039	-				+0.6
3,757,039	-				+0.6
3,757,069	-				+0.4
3,757,069	-				-1.3
3,757,069	-				+1.5
3,757,088	-				-1.2
3,757,187	+		PFLU_RS16565	0.33	+2.0
3,757,198	+		PFLU_RS16565	0.36	+0.9
3,757,198	+		PFLU_RS16565	0.36	-0.6
3,757,205	-		PFLU_RS16565	0.37	-0.1
3,757,207	+		PFLU_RS16565	0.38	+0.0
3,757,283	-		PFLU_RS16565	0.56	-0.1
3,757,283	-		PFLU_RS16565	0.56	-0.6
3,757,292	+		PFLU_RS16565	0.58	-1.3
3,757,298	-		PFLU_RS16565	0.60	+1.0
3,757,298	-		PFLU_RS16565	0.60	+1.4
3,757,298	-		PFLU_RS16565	0.60	+0.1
3,757,300	-		PFLU_RS16565	0.60	-3.2
3,757,304	-		PFLU_RS16565	0.61	-2.0
3,757,343	-		PFLU_RS16565	0.71	+1.5
3,757,443	+				+1.6
3,757,444	-				+1.0
3,757,447	-				-1.6
3,757,467	-				+0.4
3,757,480	+				-0.2
3,757,481	-				+0.0
3,757,481	-				+1.2
3,757,489	+				+0.4
3,757,542	-				+0.0
3,757,583	+				+1.9
3,757,583	+				+0.1
3,757,584	-				+0.9
3,757,584	-				-0.4
3,757,584	-				-2.0
3,757,584	-				+1.7
3,757,626	+		PFLU_RS31670	0.15	+1.2
3,757,654	+		PFLU_RS31670	0.20	-0.3
3,757,682	+		PFLU_RS31670	0.24	-0.8
3,757,698	+		PFLU_RS31670	0.27	+0.7
3,757,752	-		PFLU_RS31670	0.36	+2.6
3,757,752	-		PFLU_RS31670	0.36	+0.0
3,757,758	-		PFLU_RS31670	0.37	-0.6
3,757,760	+		PFLU_RS31670	0.37	+1.2
3,757,763	+		PFLU_RS31670	0.38	-2.3
3,757,809	-		PFLU_RS31670	0.45	-1.3
3,757,913	+		PFLU_RS31670	0.62	-1.8
3,757,914	-		PFLU_RS31670	0.62	+0.9
3,757,914	-		PFLU_RS31670	0.62	+0.4
3,757,916	+		PFLU_RS31670	0.63	-2.2
3,757,916	+		PFLU_RS31670	0.63	+0.6
3,757,958	+		PFLU_RS31670	0.69	-0.6
3,757,958	+		PFLU_RS31670	0.69	+2.2
3,758,019	-		PFLU_RS31670	0.79	+0.1
3,758,019	-		PFLU_RS31670	0.79	-0.9
3,758,060	+		PFLU_RS31670	0.86	-0.1
3,758,109	-				+0.9
3,758,111	+				+0.4
3,758,111	+				+0.1
3,758,111	+				+0.4
3,758,112	-				+3.9
3,758,112	-				-2.2
3,758,112	-				+0.3
3,758,112	-				+1.0
3,758,112	-				+0.8
3,758,112	-				+0.4
3,758,112	-				+0.3
3,758,178	+				-1.3
3,758,178	+				-1.8
3,758,178	+				-0.8
3,758,179	-				-0.8
3,758,179	-				+0.6
3,758,179	-				+0.6
3,758,179	-				-0.2
3,758,179	-				-0.2
3,758,179	-				+0.0
3,758,179	-				+1.0
3,758,202	+				-2.1
3,758,235	+		PFLU_RS16570	0.12	+1.4
3,758,236	-		PFLU_RS16570	0.13	+0.1
3,758,236	-		PFLU_RS16570	0.13	-1.3
3,758,236	-		PFLU_RS16570	0.13	-0.7
3,758,236	-		PFLU_RS16570	0.13	-1.3
3,758,236	-		PFLU_RS16570	0.13	-2.2
3,758,236	-		PFLU_RS16570	0.13	+1.6
3,758,279	+		PFLU_RS16570	0.22	-2.3
3,758,279	+		PFLU_RS16570	0.22	+0.5
3,758,279	+		PFLU_RS16570	0.22	+0.2
3,758,279	+		PFLU_RS16570	0.22	+0.1
3,758,279	+		PFLU_RS16570	0.22	+0.0
3,758,279	+		PFLU_RS16570	0.22	+0.2
3,758,279	+		PFLU_RS16570	0.22	-1.0
3,758,279	+		PFLU_RS16570	0.22	+0.7
3,758,279	+		PFLU_RS16570	0.22	-2.0
3,758,279	+		PFLU_RS16570	0.22	+0.5
3,758,280	-		PFLU_RS16570	0.22	+0.0
3,758,280	-		PFLU_RS16570	0.22	-0.3
3,758,280	-		PFLU_RS16570	0.22	-1.0
3,758,280	-		PFLU_RS16570	0.22	-0.7
3,758,280	-		PFLU_RS16570	0.22	-0.6
3,758,280	-		PFLU_RS16570	0.22	-1.0
3,758,280	-		PFLU_RS16570	0.22	-0.8
3,758,280	-		PFLU_RS16570	0.22	-0.6
3,758,280	-		PFLU_RS16570	0.22	-3.4
3,758,280	-		PFLU_RS16570	0.22	+2.4
3,758,280	-		PFLU_RS16570	0.22	+1.0
3,758,285	+		PFLU_RS16570	0.23	-1.8
3,758,286	-		PFLU_RS16570	0.23	-2.3
3,758,345	+		PFLU_RS16570	0.36	+1.0
3,758,362	+		PFLU_RS16570	0.40	-0.7
3,758,362	+		PFLU_RS16570	0.40	-2.3
3,758,363	-		PFLU_RS16570	0.40	-2.3
3,758,363	-		PFLU_RS16570	0.40	+2.0
3,758,391	+		PFLU_RS16570	0.46	-0.2
3,758,391	+		PFLU_RS16570	0.46	-0.3
3,758,391	+		PFLU_RS16570	0.46	+1.6
3,758,392	-		PFLU_RS16570	0.46	-1.0
3,758,392	-		PFLU_RS16570	0.46	-1.3
3,758,439	+		PFLU_RS16570	0.56	-0.4
3,758,439	+		PFLU_RS16570	0.56	-1.3
3,758,440	-		PFLU_RS16570	0.56	-0.4
3,758,440	-		PFLU_RS16570	0.56	-1.0
3,758,440	-		PFLU_RS16570	0.56	+1.5
3,758,440	-		PFLU_RS16570	0.56	+1.2
3,758,474	+		PFLU_RS16570	0.63	+0.0
3,758,474	+		PFLU_RS16570	0.63	-0.6
3,758,474	+		PFLU_RS16570	0.63	-2.0
3,758,474	+		PFLU_RS16570	0.63	+0.8
3,758,475	-		PFLU_RS16570	0.64	+1.3
3,758,475	-		PFLU_RS16570	0.64	-1.2
3,758,492	+		PFLU_RS16570	0.67	+1.7
3,758,492	+		PFLU_RS16570	0.67	-0.1
3,758,493	-		PFLU_RS16570	0.68	-1.1
3,758,493	-		PFLU_RS16570	0.68	-1.8
3,758,493	-		PFLU_RS16570	0.68	+1.8
3,758,550	+		PFLU_RS16570	0.80	+1.4
3,758,550	+		PFLU_RS16570	0.80	+0.4
3,758,550	+		PFLU_RS16570	0.80	+1.5
3,758,551	-		PFLU_RS16570	0.80	+1.9
3,758,551	-		PFLU_RS16570	0.80	+0.7
3,758,559	-		PFLU_RS16570	0.82	-0.8
3,758,631	-				+1.4
3,758,631	-				+0.1
3,758,631	-				+0.0
3,758,633	-				+0.1
3,758,633	-				+0.4
3,758,656	+				+0.9
3,758,657	-				+1.5
3,758,657	-				+1.3
3,758,657	-				+0.8
3,758,674	+				+0.6
3,758,675	-				+1.3
3,758,691	+				+0.4
3,758,700	+				+0.4
3,758,700	+				+1.0
3,758,700	+				+1.8
3,758,700	+				-0.1
3,758,701	-				+0.0
3,758,701	-				-1.0
3,758,701	-				-0.5
3,758,703	+				-1.3
3,758,722	+				+2.6
3,758,801	-				+0.3
3,758,869	+				-0.8
3,758,890	+				+0.6
3,758,891	-				+0.0
3,758,939	+		PFLU_RS16575	0.20	-0.6
3,758,939	+		PFLU_RS16575	0.20	+0.0
3,758,940	-		PFLU_RS16575	0.21	-1.0
3,758,940	-		PFLU_RS16575	0.21	+0.4
3,759,077	+		PFLU_RS16575	0.52	+0.4
3,759,077	+		PFLU_RS16575	0.52	+0.0
3,759,077	+		PFLU_RS16575	0.52	-0.2
3,759,077	+		PFLU_RS16575	0.52	-0.7
3,759,077	+		PFLU_RS16575	0.52	+1.2
3,759,077	+		PFLU_RS16575	0.52	-1.4
3,759,077	+		PFLU_RS16575	0.52	+1.9
3,759,078	-		PFLU_RS16575	0.53	-0.3
3,759,078	-		PFLU_RS16575	0.53	+1.9
3,759,078	-		PFLU_RS16575	0.53	-1.3
3,759,078	-		PFLU_RS16575	0.53	+0.6
3,759,078	-		PFLU_RS16575	0.53	+0.6
3,759,078	-		PFLU_RS16575	0.53	+0.2
3,759,078	-		PFLU_RS16575	0.53	+2.0
3,759,078	-		PFLU_RS16575	0.53	-1.4
3,759,078	-		PFLU_RS16575	0.53	-0.9
3,759,078	-		PFLU_RS16575	0.53	-0.6
3,759,078	-		PFLU_RS16575	0.53	-1.3
3,759,128	+		PFLU_RS16575	0.64	+0.7
3,759,128	+		PFLU_RS16575	0.64	+0.6
3,759,129	-		PFLU_RS16575	0.65	-0.6
3,759,129	-		PFLU_RS16575	0.65	-2.0
3,759,129	-		PFLU_RS16575	0.65	-1.8
3,759,132	+		PFLU_RS16575	0.65	-0.6
3,759,132	+		PFLU_RS16575	0.65	-2.7
3,759,133	-		PFLU_RS16575	0.66	-2.9
3,759,133	-		PFLU_RS16575	0.66	-2.8