Experiment: DAC20_cps8_1MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0152 and BT0153 are separated by 364 nucleotides BT0153 and BT0154 are separated by 6 nucleotides
BT0152: BT0152 - acetyl esterase (acetylxylosidase) (NCBI ptt file), at 156,800 to 157,618
BT0152
BT0153: BT0153 - hypothetical protein (NCBI ptt file), at 157,983 to 158,858
BT0153
BT0154: BT0154 - putative periplasmic protease (NCBI ptt file), at 158,865 to 160,319
BT0154
Position (kb) 157
158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 157.065 kb on + strand, within BT0152 at 157.270 kb on + strand, within BT0152 at 157.270 kb on + strand, within BT0152 at 157.292 kb on - strand, within BT0152 at 157.305 kb on + strand, within BT0152 at 157.306 kb on - strand, within BT0152 at 157.390 kb on + strand, within BT0152 at 157.391 kb on - strand, within BT0152 at 157.391 kb on - strand, within BT0152 at 157.395 kb on + strand, within BT0152 at 157.395 kb on + strand, within BT0152 at 157.396 kb on - strand, within BT0152 at 157.438 kb on + strand, within BT0152 at 157.480 kb on + strand, within BT0152 at 157.560 kb on - strand at 157.601 kb on - strand at 157.668 kb on + strand at 157.668 kb on + strand at 157.669 kb on - strand at 157.676 kb on + strand at 157.690 kb on + strand at 157.695 kb on + strand at 157.695 kb on + strand at 157.794 kb on - strand at 157.794 kb on - strand at 157.832 kb on + strand at 157.854 kb on + strand at 157.921 kb on - strand at 157.921 kb on - strand at 158.024 kb on + strand at 158.037 kb on - strand at 158.037 kb on - strand at 158.042 kb on - strand at 158.045 kb on + strand at 158.096 kb on + strand, within BT0153 at 158.096 kb on + strand, within BT0153 at 158.097 kb on - strand, within BT0153 at 158.218 kb on + strand, within BT0153 at 158.219 kb on - strand, within BT0153 at 158.222 kb on + strand, within BT0153 at 158.279 kb on - strand, within BT0153 at 158.455 kb on + strand, within BT0153 at 158.495 kb on - strand, within BT0153 at 158.568 kb on - strand, within BT0153 at 158.653 kb on + strand, within BT0153 at 158.657 kb on + strand, within BT0153 at 158.657 kb on + strand, within BT0153 at 158.715 kb on + strand, within BT0153 at 158.824 kb on - strand at 158.827 kb on - strand at 158.930 kb on + strand at 158.930 kb on + strand at 159.009 kb on + strand at 159.010 kb on - strand at 159.015 kb on + strand, within BT0154 at 159.154 kb on + strand, within BT0154 at 159.166 kb on - strand, within BT0154 at 159.215 kb on + strand, within BT0154 at 159.283 kb on - strand, within BT0154 at 159.436 kb on + strand, within BT0154 at 159.437 kb on - strand, within BT0154 at 159.579 kb on - strand, within BT0154 at 159.656 kb on + strand, within BT0154 at 159.689 kb on + strand, within BT0154 at 159.689 kb on + strand, within BT0154 at 159.759 kb on - strand, within BT0154 at 159.850 kb on - strand, within BT0154 at 159.854 kb on + strand, within BT0154 at 159.855 kb on - strand, within BT0154
Per-strain Table
Position Strand Gene LocusTag Fraction DAC20_cps8_1MOI remove 157,065 + BT0152 0.32 -0.0 157,270 + BT0152 0.57 +0.4 157,270 + BT0152 0.57 -1.3 157,292 - BT0152 0.60 -2.8 157,305 + BT0152 0.62 -0.0 157,306 - BT0152 0.62 -2.2 157,390 + BT0152 0.72 +1.6 157,391 - BT0152 0.72 -1.3 157,391 - BT0152 0.72 -0.8 157,395 + BT0152 0.73 +0.5 157,395 + BT0152 0.73 -0.1 157,396 - BT0152 0.73 -0.0 157,438 + BT0152 0.78 -0.6 157,480 + BT0152 0.83 -2.8 157,560 - -0.2 157,601 - -0.2 157,668 + -2.2 157,668 + -0.6 157,669 - -1.0 157,676 + -0.2 157,690 + +0.4 157,695 + -0.8 157,695 + -0.7 157,794 - +1.0 157,794 - -1.2 157,832 + +0.6 157,854 + -1.0 157,921 - -1.6 157,921 - -2.8 158,024 + -1.3 158,037 - -2.9 158,037 - +0.5 158,042 - -0.0 158,045 + -3.3 158,096 + BT0153 0.13 +0.4 158,096 + BT0153 0.13 +0.7 158,097 - BT0153 0.13 -0.6 158,218 + BT0153 0.27 -2.2 158,219 - BT0153 0.27 +0.5 158,222 + BT0153 0.27 +1.0 158,279 - BT0153 0.34 +1.0 158,455 + BT0153 0.54 -1.3 158,495 - BT0153 0.58 -0.0 158,568 - BT0153 0.67 -1.3 158,653 + BT0153 0.76 +1.8 158,657 + BT0153 0.77 +1.0 158,657 + BT0153 0.77 -0.5 158,715 + BT0153 0.84 -1.8 158,824 - -1.0 158,827 - +0.8 158,930 + +1.0 158,930 + -0.6 159,009 + -2.0 159,010 - -0.6 159,015 + BT0154 0.10 -0.1 159,154 + BT0154 0.20 +0.7 159,166 - BT0154 0.21 +0.7 159,215 + BT0154 0.24 -2.2 159,283 - BT0154 0.29 -2.8 159,436 + BT0154 0.39 -0.6 159,437 - BT0154 0.39 -0.6 159,579 - BT0154 0.49 +1.7 159,656 + BT0154 0.54 -1.0 159,689 + BT0154 0.57 -0.6 159,689 + BT0154 0.57 -1.5 159,759 - BT0154 0.61 -2.3 159,850 - BT0154 0.68 -0.4 159,854 + BT0154 0.68 -0.0 159,855 - BT0154 0.68 -1.0
Or see this region's nucleotide sequence