Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_792

Experiment: nitrogen source nitrite 0.5mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_791 and Pf6N2E2_792 are separated by 29 nucleotidesPf6N2E2_792 and Pf6N2E2_793 are separated by 550 nucleotidesPf6N2E2_793 and Pf6N2E2_794 overlap by 24 nucleotides Pf6N2E2_791 - hypothetical protein, at 914,604 to 916,886 _791 Pf6N2E2_792 - hypothetical protein, at 916,916 to 919,825 _792 Pf6N2E2_793 - hypothetical protein, at 920,376 to 920,510 _793 Pf6N2E2_794 - YD repeat protein, at 920,487 to 925,193 _794 Position (kb) 916 917 918 919 920Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 915.967 kb on + strand, within Pf6N2E2_791at 915.967 kb on + strand, within Pf6N2E2_791at 915.967 kb on + strand, within Pf6N2E2_791at 915.967 kb on + strand, within Pf6N2E2_791at 915.968 kb on - strand, within Pf6N2E2_791at 915.968 kb on - strand, within Pf6N2E2_791at 915.968 kb on - strand, within Pf6N2E2_791at 915.968 kb on - strand, within Pf6N2E2_791at 916.023 kb on + strand, within Pf6N2E2_791at 916.023 kb on + strand, within Pf6N2E2_791at 916.023 kb on + strand, within Pf6N2E2_791at 916.023 kb on + strand, within Pf6N2E2_791at 916.023 kb on + strand, within Pf6N2E2_791at 916.024 kb on - strand, within Pf6N2E2_791at 916.153 kb on + strand, within Pf6N2E2_791at 916.153 kb on + strand, within Pf6N2E2_791at 916.153 kb on + strand, within Pf6N2E2_791at 916.154 kb on - strand, within Pf6N2E2_791at 916.223 kb on + strand, within Pf6N2E2_791at 916.249 kb on + strand, within Pf6N2E2_791at 916.249 kb on + strand, within Pf6N2E2_791at 916.249 kb on + strand, within Pf6N2E2_791at 916.250 kb on - strand, within Pf6N2E2_791at 916.297 kb on + strand, within Pf6N2E2_791at 916.297 kb on + strand, within Pf6N2E2_791at 916.297 kb on + strand, within Pf6N2E2_791at 916.298 kb on - strand, within Pf6N2E2_791at 916.298 kb on - strand, within Pf6N2E2_791at 916.415 kb on - strand, within Pf6N2E2_791at 916.479 kb on + strand, within Pf6N2E2_791at 916.479 kb on + strand, within Pf6N2E2_791at 916.479 kb on + strand, within Pf6N2E2_791at 916.481 kb on + strand, within Pf6N2E2_791at 916.481 kb on + strand, within Pf6N2E2_791at 916.482 kb on - strand, within Pf6N2E2_791at 916.560 kb on - strand, within Pf6N2E2_791at 916.589 kb on + strand, within Pf6N2E2_791at 916.589 kb on + strand, within Pf6N2E2_791at 916.590 kb on - strand, within Pf6N2E2_791at 916.610 kb on - strand, within Pf6N2E2_791at 916.651 kb on + strand, within Pf6N2E2_791at 916.651 kb on + strand, within Pf6N2E2_791at 916.740 kb on + strandat 916.897 kb on + strandat 916.897 kb on + strandat 916.945 kb on + strandat 917.256 kb on + strand, within Pf6N2E2_792at 917.256 kb on + strand, within Pf6N2E2_792at 917.256 kb on + strand, within Pf6N2E2_792at 917.256 kb on + strand, within Pf6N2E2_792at 917.270 kb on + strand, within Pf6N2E2_792at 917.270 kb on + strand, within Pf6N2E2_792at 917.271 kb on - strand, within Pf6N2E2_792at 917.432 kb on + strand, within Pf6N2E2_792at 917.666 kb on + strand, within Pf6N2E2_792at 917.708 kb on + strand, within Pf6N2E2_792at 917.747 kb on + strand, within Pf6N2E2_792at 917.747 kb on + strand, within Pf6N2E2_792at 917.747 kb on + strandat 917.748 kb on - strand, within Pf6N2E2_792at 917.748 kb on - strand, within Pf6N2E2_792at 917.748 kb on - strand, within Pf6N2E2_792at 917.748 kb on - strand, within Pf6N2E2_792at 917.766 kb on + strand, within Pf6N2E2_792at 917.766 kb on + strand, within Pf6N2E2_792at 917.767 kb on - strand, within Pf6N2E2_792at 917.784 kb on + strand, within Pf6N2E2_792at 917.784 kb on + strand, within Pf6N2E2_792at 917.785 kb on - strand, within Pf6N2E2_792at 917.880 kb on + strand, within Pf6N2E2_792at 917.880 kb on + strand, within Pf6N2E2_792at 917.937 kb on + strand, within Pf6N2E2_792at 918.024 kb on + strand, within Pf6N2E2_792at 918.024 kb on + strand, within Pf6N2E2_792at 918.025 kb on - strand, within Pf6N2E2_792at 918.025 kb on - strand, within Pf6N2E2_792at 918.025 kb on - strand, within Pf6N2E2_792at 918.038 kb on + strand, within Pf6N2E2_792at 918.038 kb on + strand, within Pf6N2E2_792at 918.038 kb on + strand, within Pf6N2E2_792at 918.038 kb on + strand, within Pf6N2E2_792at 918.038 kb on + strand, within Pf6N2E2_792at 918.038 kb on + strand, within Pf6N2E2_792at 918.039 kb on - strand, within Pf6N2E2_792at 918.039 kb on - strand, within Pf6N2E2_792at 918.039 kb on - strand, within Pf6N2E2_792at 918.039 kb on - strand, within Pf6N2E2_792at 918.039 kb on - strand, within Pf6N2E2_792at 918.039 kb on - strand, within Pf6N2E2_792at 918.039 kb on - strand, within Pf6N2E2_792at 918.039 kb on - strand, within Pf6N2E2_792at 918.039 kb on - strand, within Pf6N2E2_792at 918.039 kb on - strand, within Pf6N2E2_792at 918.039 kb on - strand, within Pf6N2E2_792at 918.039 kb on - strand, within Pf6N2E2_792at 918.041 kb on - strand, within Pf6N2E2_792at 918.041 kb on - strand, within Pf6N2E2_792at 918.061 kb on + strand, within Pf6N2E2_792at 918.061 kb on + strand, within Pf6N2E2_792at 918.061 kb on + strand, within Pf6N2E2_792at 918.061 kb on + strand, within Pf6N2E2_792at 918.061 kb on + strand, within Pf6N2E2_792at 918.062 kb on - strand, within Pf6N2E2_792at 918.062 kb on - strand, within Pf6N2E2_792at 918.062 kb on - strand, within Pf6N2E2_792at 918.097 kb on + strand, within Pf6N2E2_792at 918.101 kb on + strand, within Pf6N2E2_792at 918.101 kb on + strand, within Pf6N2E2_792at 918.102 kb on - strand, within Pf6N2E2_792at 918.102 kb on - strand, within Pf6N2E2_792at 918.153 kb on - strand, within Pf6N2E2_792at 918.153 kb on - strand, within Pf6N2E2_792at 918.153 kb on - strand, within Pf6N2E2_792at 918.153 kb on - strand, within Pf6N2E2_792at 918.274 kb on - strand, within Pf6N2E2_792at 918.406 kb on + strand, within Pf6N2E2_792at 918.407 kb on - strand, within Pf6N2E2_792at 918.407 kb on - strand, within Pf6N2E2_792at 918.481 kb on + strand, within Pf6N2E2_792at 918.575 kb on + strand, within Pf6N2E2_792at 918.576 kb on - strand, within Pf6N2E2_792at 918.630 kb on + strand, within Pf6N2E2_792at 918.631 kb on - strand, within Pf6N2E2_792at 918.635 kb on - strand, within Pf6N2E2_792at 918.766 kb on + strand, within Pf6N2E2_792at 918.860 kb on + strand, within Pf6N2E2_792at 919.001 kb on + strand, within Pf6N2E2_792at 919.002 kb on - strand, within Pf6N2E2_792at 919.002 kb on - strand, within Pf6N2E2_792at 919.254 kb on + strand, within Pf6N2E2_792at 919.255 kb on - strand, within Pf6N2E2_792at 919.255 kb on - strand, within Pf6N2E2_792at 919.256 kb on + strand, within Pf6N2E2_792at 919.413 kb on + strand, within Pf6N2E2_792at 919.435 kb on + strand, within Pf6N2E2_792at 919.788 kb on - strandat 919.821 kb on + strandat 919.980 kb on + strandat 920.024 kb on + strandat 920.189 kb on + strandat 920.206 kb on + strandat 920.206 kb on + strandat 920.363 kb on + strandat 920.822 kb on + strandat 920.822 kb on + strandat 920.822 kb on + strandat 920.822 kb on + strandat 920.822 kb on + strandat 920.822 kb on + strandat 920.823 kb on - strandat 920.823 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM
remove
915,967 + Pf6N2E2_791 0.60 -0.3
915,967 + Pf6N2E2_791 0.60 +0.6
915,967 + Pf6N2E2_791 0.60 +0.2
915,967 + Pf6N2E2_791 0.60 -3.4
915,968 - Pf6N2E2_791 0.60 -2.0
915,968 - Pf6N2E2_791 0.60 +0.3
915,968 - Pf6N2E2_791 0.60 +1.7
915,968 - Pf6N2E2_791 0.60 +2.7
916,023 + Pf6N2E2_791 0.62 +1.7
916,023 + Pf6N2E2_791 0.62 +1.1
916,023 + Pf6N2E2_791 0.62 +2.1
916,023 + Pf6N2E2_791 0.62 +1.7
916,023 + Pf6N2E2_791 0.62 +0.8
916,024 - Pf6N2E2_791 0.62 +0.1
916,153 + Pf6N2E2_791 0.68 +0.1
916,153 + Pf6N2E2_791 0.68 +0.2
916,153 + Pf6N2E2_791 0.68 +0.6
916,154 - Pf6N2E2_791 0.68 +1.7
916,223 + Pf6N2E2_791 0.71 -0.4
916,249 + Pf6N2E2_791 0.72 -0.4
916,249 + Pf6N2E2_791 0.72 +1.9
916,249 + Pf6N2E2_791 0.72 -1.3
916,250 - Pf6N2E2_791 0.72 +0.0
916,297 + Pf6N2E2_791 0.74 -1.5
916,297 + Pf6N2E2_791 0.74 -0.6
916,297 + Pf6N2E2_791 0.74 -0.6
916,298 - Pf6N2E2_791 0.74 +0.9
916,298 - Pf6N2E2_791 0.74 +0.1
916,415 - Pf6N2E2_791 0.79 +1.7
916,479 + Pf6N2E2_791 0.82 +0.1
916,479 + Pf6N2E2_791 0.82 +1.7
916,479 + Pf6N2E2_791 0.82 -0.3
916,481 + Pf6N2E2_791 0.82 +0.0
916,481 + Pf6N2E2_791 0.82 +0.6
916,482 - Pf6N2E2_791 0.82 +1.7
916,560 - Pf6N2E2_791 0.86 -1.7
916,589 + Pf6N2E2_791 0.87 -0.1
916,589 + Pf6N2E2_791 0.87 -0.1
916,590 - Pf6N2E2_791 0.87 +0.7
916,610 - Pf6N2E2_791 0.88 +0.3
916,651 + Pf6N2E2_791 0.90 -0.7
916,651 + Pf6N2E2_791 0.90 +1.7
916,740 + +1.7
916,897 + -1.2
916,897 + +2.3
916,945 + +0.7
917,256 + Pf6N2E2_792 0.12 +0.5
917,256 + Pf6N2E2_792 0.12 +0.0
917,256 + Pf6N2E2_792 0.12 +1.7
917,256 + Pf6N2E2_792 0.12 +1.7
917,270 + Pf6N2E2_792 0.12 +0.1
917,270 + Pf6N2E2_792 0.12 +1.0
917,271 - Pf6N2E2_792 0.12 +0.1
917,432 + Pf6N2E2_792 0.18 +1.7
917,666 + Pf6N2E2_792 0.26 +0.2
917,708 + Pf6N2E2_792 0.27 +1.7
917,747 + Pf6N2E2_792 0.29 -0.1
917,747 + Pf6N2E2_792 0.29 -2.6
917,747 + +1.7
917,748 - Pf6N2E2_792 0.29 +1.7
917,748 - Pf6N2E2_792 0.29 +0.1
917,748 - Pf6N2E2_792 0.29 +0.7
917,748 - Pf6N2E2_792 0.29 -0.3
917,766 + Pf6N2E2_792 0.29 +3.7
917,766 + Pf6N2E2_792 0.29 -1.1
917,767 - Pf6N2E2_792 0.29 +1.7
917,784 + Pf6N2E2_792 0.30 -0.7
917,784 + Pf6N2E2_792 0.30 -0.9
917,785 - Pf6N2E2_792 0.30 -0.8
917,880 + Pf6N2E2_792 0.33 +0.1
917,880 + Pf6N2E2_792 0.33 -0.3
917,937 + Pf6N2E2_792 0.35 +1.7
918,024 + Pf6N2E2_792 0.38 +1.7
918,024 + Pf6N2E2_792 0.38 -1.3
918,025 - Pf6N2E2_792 0.38 -0.6
918,025 - Pf6N2E2_792 0.38 -0.3
918,025 - Pf6N2E2_792 0.38 -0.8
918,038 + Pf6N2E2_792 0.39 +1.7
918,038 + Pf6N2E2_792 0.39 -1.1
918,038 + Pf6N2E2_792 0.39 +0.4
918,038 + Pf6N2E2_792 0.39 -0.4
918,038 + Pf6N2E2_792 0.39 -0.0
918,038 + Pf6N2E2_792 0.39 -1.8
918,039 - Pf6N2E2_792 0.39 +0.9
918,039 - Pf6N2E2_792 0.39 +0.8
918,039 - Pf6N2E2_792 0.39 -1.1
918,039 - Pf6N2E2_792 0.39 -1.0
918,039 - Pf6N2E2_792 0.39 -1.3
918,039 - Pf6N2E2_792 0.39 +0.1
918,039 - Pf6N2E2_792 0.39 -1.7
918,039 - Pf6N2E2_792 0.39 -2.1
918,039 - Pf6N2E2_792 0.39 -1.0
918,039 - Pf6N2E2_792 0.39 +0.2
918,039 - Pf6N2E2_792 0.39 -0.8
918,039 - Pf6N2E2_792 0.39 -1.6
918,041 - Pf6N2E2_792 0.39 -0.1
918,041 - Pf6N2E2_792 0.39 +0.3
918,061 + Pf6N2E2_792 0.39 +0.7
918,061 + Pf6N2E2_792 0.39 -0.0
918,061 + Pf6N2E2_792 0.39 -1.9
918,061 + Pf6N2E2_792 0.39 -0.2
918,061 + Pf6N2E2_792 0.39 +0.7
918,062 - Pf6N2E2_792 0.39 +0.1
918,062 - Pf6N2E2_792 0.39 -1.7
918,062 - Pf6N2E2_792 0.39 +0.5
918,097 + Pf6N2E2_792 0.41 -1.4
918,101 + Pf6N2E2_792 0.41 -0.5
918,101 + Pf6N2E2_792 0.41 +1.7
918,102 - Pf6N2E2_792 0.41 -0.4
918,102 - Pf6N2E2_792 0.41 +0.1
918,153 - Pf6N2E2_792 0.43 -0.3
918,153 - Pf6N2E2_792 0.43 +0.3
918,153 - Pf6N2E2_792 0.43 -0.8
918,153 - Pf6N2E2_792 0.43 +1.7
918,274 - Pf6N2E2_792 0.47 -0.7
918,406 + Pf6N2E2_792 0.51 -1.7
918,407 - Pf6N2E2_792 0.51 +0.8
918,407 - Pf6N2E2_792 0.51 +0.7
918,481 + Pf6N2E2_792 0.54 +1.7
918,575 + Pf6N2E2_792 0.57 +1.7
918,576 - Pf6N2E2_792 0.57 +0.7
918,630 + Pf6N2E2_792 0.59 -0.0
918,631 - Pf6N2E2_792 0.59 +1.7
918,635 - Pf6N2E2_792 0.59 -0.5
918,766 + Pf6N2E2_792 0.64 +0.8
918,860 + Pf6N2E2_792 0.67 +0.1
919,001 + Pf6N2E2_792 0.72 +0.1
919,002 - Pf6N2E2_792 0.72 -0.6
919,002 - Pf6N2E2_792 0.72 +1.7
919,254 + Pf6N2E2_792 0.80 +1.7
919,255 - Pf6N2E2_792 0.80 -0.6
919,255 - Pf6N2E2_792 0.80 +1.7
919,256 + Pf6N2E2_792 0.80 -0.3
919,413 + Pf6N2E2_792 0.86 -1.7
919,435 + Pf6N2E2_792 0.87 -1.8
919,788 - +0.7
919,821 + -2.1
919,980 + -0.3
920,024 + +1.7
920,189 + +0.2
920,206 + +0.7
920,206 + +1.7
920,363 + -3.2
920,822 + +1.0
920,822 + +2.0
920,822 + -1.0
920,822 + +1.7
920,822 + +0.4
920,822 + +0.6
920,823 - +1.0
920,823 - -0.9

Or see this region's nucleotide sequence