Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_762

Experiment: nitrogen source nitrite 0.5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_761 and Pf6N2E2_762 are separated by 183 nucleotidesPf6N2E2_762 and Pf6N2E2_763 are separated by 341 nucleotides Pf6N2E2_761 - Hemolysin-type calcium-binding region, at 872,037 to 873,326 _761 Pf6N2E2_762 - FIG00960186: hypothetical protein, at 873,510 to 873,776 _762 Pf6N2E2_763 - Sigma-54 dependent transcriptional regulator, at 874,118 to 875,443 _763 Position (kb) 873 874Strain fitness (log2 ratio) -2 -1 0 1 2at 872.606 kb on + strand, within Pf6N2E2_761at 872.606 kb on + strand, within Pf6N2E2_761at 872.606 kb on + strand, within Pf6N2E2_761at 872.606 kb on + strand, within Pf6N2E2_761at 872.606 kb on + strand, within Pf6N2E2_761at 872.606 kb on + strand, within Pf6N2E2_761at 872.606 kb on + strand, within Pf6N2E2_761at 872.607 kb on - strand, within Pf6N2E2_761at 872.607 kb on - strand, within Pf6N2E2_761at 872.607 kb on - strand, within Pf6N2E2_761at 872.646 kb on - strand, within Pf6N2E2_761at 872.646 kb on - strand, within Pf6N2E2_761at 872.756 kb on - strand, within Pf6N2E2_761at 872.796 kb on + strand, within Pf6N2E2_761at 872.978 kb on - strand, within Pf6N2E2_761at 873.070 kb on + strand, within Pf6N2E2_761at 873.212 kb on + strandat 873.218 kb on + strandat 873.218 kb on + strandat 873.218 kb on + strandat 873.218 kb on + strandat 873.218 kb on + strandat 873.218 kb on + strandat 873.218 kb on + strandat 873.218 kb on + strandat 873.218 kb on + strandat 873.219 kb on - strandat 873.219 kb on - strandat 873.219 kb on - strandat 873.452 kb on - strandat 873.452 kb on - strandat 873.463 kb on + strandat 873.463 kb on + strandat 873.464 kb on - strandat 873.464 kb on - strandat 873.464 kb on - strandat 873.539 kb on + strand, within Pf6N2E2_762at 873.539 kb on + strand, within Pf6N2E2_762at 873.539 kb on + strand, within Pf6N2E2_762at 873.540 kb on - strand, within Pf6N2E2_762at 873.540 kb on - strand, within Pf6N2E2_762at 873.540 kb on - strand, within Pf6N2E2_762at 873.540 kb on - strand, within Pf6N2E2_762at 873.540 kb on - strand, within Pf6N2E2_762at 873.540 kb on - strand, within Pf6N2E2_762at 873.540 kb on - strand, within Pf6N2E2_762at 873.540 kb on - strand, within Pf6N2E2_762at 873.540 kb on - strand, within Pf6N2E2_762at 873.540 kb on - strand, within Pf6N2E2_762at 873.540 kb on - strand, within Pf6N2E2_762at 873.541 kb on + strand, within Pf6N2E2_762at 873.542 kb on - strand, within Pf6N2E2_762at 873.542 kb on - strand, within Pf6N2E2_762at 873.606 kb on - strand, within Pf6N2E2_762at 873.608 kb on - strand, within Pf6N2E2_762at 873.608 kb on - strand, within Pf6N2E2_762at 873.672 kb on - strand, within Pf6N2E2_762at 873.672 kb on - strand, within Pf6N2E2_762at 873.789 kb on + strandat 873.790 kb on - strandat 873.844 kb on - strandat 873.849 kb on + strandat 873.849 kb on + strandat 873.849 kb on + strandat 873.849 kb on + strandat 873.849 kb on + strandat 873.849 kb on + strandat 873.849 kb on + strandat 873.850 kb on - strandat 873.850 kb on - strandat 873.850 kb on - strandat 873.850 kb on - strandat 873.850 kb on - strandat 873.850 kb on - strandat 873.884 kb on + strandat 873.885 kb on - strandat 873.885 kb on - strandat 873.885 kb on - strandat 873.885 kb on - strandat 873.967 kb on - strandat 873.987 kb on - strandat 874.022 kb on + strandat 874.023 kb on - strandat 874.023 kb on - strandat 874.132 kb on + strandat 874.420 kb on + strand, within Pf6N2E2_763at 874.421 kb on - strand, within Pf6N2E2_763

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM
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872,606 + Pf6N2E2_761 0.44 -1.4
872,606 + Pf6N2E2_761 0.44 +0.4
872,606 + Pf6N2E2_761 0.44 -1.3
872,606 + Pf6N2E2_761 0.44 -0.2
872,606 + Pf6N2E2_761 0.44 -0.5
872,606 + Pf6N2E2_761 0.44 -1.1
872,606 + Pf6N2E2_761 0.44 -2.7
872,607 - Pf6N2E2_761 0.44 -1.4
872,607 - Pf6N2E2_761 0.44 -0.3
872,607 - Pf6N2E2_761 0.44 -0.9
872,646 - Pf6N2E2_761 0.47 +1.7
872,646 - Pf6N2E2_761 0.47 -0.7
872,756 - Pf6N2E2_761 0.56 -1.6
872,796 + Pf6N2E2_761 0.59 +0.6
872,978 - Pf6N2E2_761 0.73 +0.5
873,070 + Pf6N2E2_761 0.80 +0.2
873,212 + -0.3
873,218 + +0.3
873,218 + +0.7
873,218 + -0.8
873,218 + +1.7
873,218 + +0.1
873,218 + -1.6
873,218 + -1.3
873,218 + +0.2
873,218 + +0.2
873,219 - +1.7
873,219 - +0.5
873,219 - +0.5
873,452 - +0.6
873,452 - -0.8
873,463 + -0.3
873,463 + +0.1
873,464 - +0.7
873,464 - -0.4
873,464 - +0.7
873,539 + Pf6N2E2_762 0.11 -1.6
873,539 + Pf6N2E2_762 0.11 -0.5
873,539 + Pf6N2E2_762 0.11 -0.3
873,540 - Pf6N2E2_762 0.11 -0.5
873,540 - Pf6N2E2_762 0.11 +0.4
873,540 - Pf6N2E2_762 0.11 +0.7
873,540 - Pf6N2E2_762 0.11 +0.6
873,540 - Pf6N2E2_762 0.11 +0.5
873,540 - Pf6N2E2_762 0.11 -0.4
873,540 - Pf6N2E2_762 0.11 +1.4
873,540 - Pf6N2E2_762 0.11 +1.1
873,540 - Pf6N2E2_762 0.11 +0.4
873,540 - Pf6N2E2_762 0.11 +2.5
873,540 - Pf6N2E2_762 0.11 +1.1
873,541 + Pf6N2E2_762 0.12 +1.3
873,542 - Pf6N2E2_762 0.12 +1.3
873,542 - Pf6N2E2_762 0.12 -1.0
873,606 - Pf6N2E2_762 0.36 +0.8
873,608 - Pf6N2E2_762 0.37 -0.0
873,608 - Pf6N2E2_762 0.37 -0.1
873,672 - Pf6N2E2_762 0.61 +1.3
873,672 - Pf6N2E2_762 0.61 +2.4
873,789 + +1.5
873,790 - +1.1
873,844 - +0.2
873,849 + -1.6
873,849 + +0.1
873,849 + +0.3
873,849 + -0.2
873,849 + +0.6
873,849 + +0.6
873,849 + +1.7
873,850 - +1.7
873,850 - -0.1
873,850 - +1.7
873,850 - -1.2
873,850 - +0.9
873,850 - -1.7
873,884 + +1.6
873,885 - +0.7
873,885 - +0.7
873,885 - +0.5
873,885 - +1.7
873,967 - +0.1
873,987 - -1.1
874,022 + +0.7
874,023 - +1.7
874,023 - +1.0
874,132 + +0.8
874,420 + Pf6N2E2_763 0.23 -0.5
874,421 - Pf6N2E2_763 0.23 +0.1

Or see this region's nucleotide sequence