Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_721

Experiment: nitrogen source nitrite 0.5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_720 and Pf6N2E2_721 are separated by 81 nucleotidesPf6N2E2_721 and Pf6N2E2_722 are separated by 11 nucleotidesPf6N2E2_722 and Pf6N2E2_723 overlap by 7 nucleotides Pf6N2E2_720 - Molybdopterin biosynthesis protein MoeA, at 823,693 to 824,928 _720 Pf6N2E2_721 - FIG139552: Putative protease, at 825,010 to 826,005 _721 Pf6N2E2_722 - FIG139928: Putative protease, at 826,017 to 826,907 _722 Pf6N2E2_723 - FIG138517: Putative lipid carrier protein, at 826,901 to 827,371 _723 Position (kb) 825 826 827Strain fitness (log2 ratio) -2 -1 0 1 2at 824.228 kb on - strand, within Pf6N2E2_720at 824.228 kb on - strand, within Pf6N2E2_720at 824.308 kb on + strand, within Pf6N2E2_720at 824.308 kb on + strand, within Pf6N2E2_720at 824.309 kb on - strand, within Pf6N2E2_720at 824.309 kb on - strand, within Pf6N2E2_720at 824.325 kb on + strand, within Pf6N2E2_720at 824.688 kb on - strand, within Pf6N2E2_720at 824.743 kb on + strand, within Pf6N2E2_720at 824.743 kb on + strand, within Pf6N2E2_720at 824.747 kb on + strand, within Pf6N2E2_720at 824.747 kb on + strand, within Pf6N2E2_720at 824.899 kb on + strandat 825.082 kb on + strandat 825.082 kb on + strandat 825.082 kb on + strandat 825.082 kb on + strandat 825.082 kb on + strandat 825.082 kb on + strandat 825.082 kb on + strandat 825.083 kb on - strandat 825.083 kb on - strandat 825.193 kb on + strand, within Pf6N2E2_721at 825.193 kb on + strand, within Pf6N2E2_721at 825.193 kb on + strand, within Pf6N2E2_721at 825.207 kb on + strand, within Pf6N2E2_721at 825.208 kb on - strand, within Pf6N2E2_721at 825.208 kb on - strand, within Pf6N2E2_721at 825.357 kb on - strand, within Pf6N2E2_721at 825.550 kb on + strand, within Pf6N2E2_721at 825.550 kb on + strand, within Pf6N2E2_721at 825.551 kb on - strand, within Pf6N2E2_721at 825.551 kb on - strand, within Pf6N2E2_721at 825.551 kb on - strand, within Pf6N2E2_721at 825.551 kb on - strand, within Pf6N2E2_721at 825.668 kb on - strand, within Pf6N2E2_721at 825.847 kb on + strand, within Pf6N2E2_721at 825.847 kb on + strand, within Pf6N2E2_721at 825.847 kb on + strand, within Pf6N2E2_721at 825.848 kb on - strand, within Pf6N2E2_721at 825.848 kb on - strand, within Pf6N2E2_721at 825.986 kb on - strandat 825.986 kb on - strandat 826.288 kb on + strand, within Pf6N2E2_722at 826.289 kb on - strand, within Pf6N2E2_722at 826.375 kb on - strand, within Pf6N2E2_722at 826.399 kb on + strand, within Pf6N2E2_722at 826.399 kb on + strand, within Pf6N2E2_722at 826.399 kb on + strand, within Pf6N2E2_722at 826.400 kb on - strand, within Pf6N2E2_722at 826.465 kb on + strand, within Pf6N2E2_722at 826.465 kb on + strand, within Pf6N2E2_722at 826.465 kb on + strand, within Pf6N2E2_722at 826.466 kb on - strand, within Pf6N2E2_722at 826.717 kb on - strand, within Pf6N2E2_722at 826.717 kb on - strand, within Pf6N2E2_722at 826.717 kb on - strand, within Pf6N2E2_722at 826.717 kb on - strand, within Pf6N2E2_722at 826.717 kb on - strand, within Pf6N2E2_722at 826.886 kb on - strandat 826.886 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM
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824,228 - Pf6N2E2_720 0.43 -0.3
824,228 - Pf6N2E2_720 0.43 +0.4
824,308 + Pf6N2E2_720 0.50 -0.1
824,308 + Pf6N2E2_720 0.50 +1.0
824,309 - Pf6N2E2_720 0.50 +1.7
824,309 - Pf6N2E2_720 0.50 -0.3
824,325 + Pf6N2E2_720 0.51 +0.2
824,688 - Pf6N2E2_720 0.81 +1.7
824,743 + Pf6N2E2_720 0.85 +0.1
824,743 + Pf6N2E2_720 0.85 +0.2
824,747 + Pf6N2E2_720 0.85 +0.3
824,747 + Pf6N2E2_720 0.85 +0.1
824,899 + -0.2
825,082 + +0.2
825,082 + -1.0
825,082 + +0.7
825,082 + +1.1
825,082 + -1.0
825,082 + +0.1
825,082 + +0.8
825,083 - +0.3
825,083 - -0.4
825,193 + Pf6N2E2_721 0.18 -0.1
825,193 + Pf6N2E2_721 0.18 -1.7
825,193 + Pf6N2E2_721 0.18 -0.8
825,207 + Pf6N2E2_721 0.20 -0.6
825,208 - Pf6N2E2_721 0.20 -1.1
825,208 - Pf6N2E2_721 0.20 +0.1
825,357 - Pf6N2E2_721 0.35 -0.3
825,550 + Pf6N2E2_721 0.54 -1.2
825,550 + Pf6N2E2_721 0.54 +0.7
825,551 - Pf6N2E2_721 0.54 -0.5
825,551 - Pf6N2E2_721 0.54 +0.2
825,551 - Pf6N2E2_721 0.54 +2.7
825,551 - Pf6N2E2_721 0.54 -0.8
825,668 - Pf6N2E2_721 0.66 -1.0
825,847 + Pf6N2E2_721 0.84 -0.1
825,847 + Pf6N2E2_721 0.84 -1.3
825,847 + Pf6N2E2_721 0.84 +0.7
825,848 - Pf6N2E2_721 0.84 -2.2
825,848 - Pf6N2E2_721 0.84 +0.2
825,986 - +0.1
825,986 - -1.2
826,288 + Pf6N2E2_722 0.30 +0.2
826,289 - Pf6N2E2_722 0.31 -1.1
826,375 - Pf6N2E2_722 0.40 +1.7
826,399 + Pf6N2E2_722 0.43 -0.1
826,399 + Pf6N2E2_722 0.43 +1.7
826,399 + Pf6N2E2_722 0.43 -0.9
826,400 - Pf6N2E2_722 0.43 +0.1
826,465 + Pf6N2E2_722 0.50 -1.1
826,465 + Pf6N2E2_722 0.50 -0.4
826,465 + Pf6N2E2_722 0.50 +0.6
826,466 - Pf6N2E2_722 0.50 +0.7
826,717 - Pf6N2E2_722 0.79 -1.0
826,717 - Pf6N2E2_722 0.79 +1.7
826,717 - Pf6N2E2_722 0.79 +0.0
826,717 - Pf6N2E2_722 0.79 -0.2
826,717 - Pf6N2E2_722 0.79 +0.7
826,886 - +1.7
826,886 - -1.4

Or see this region's nucleotide sequence