Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4120 and Pf6N2E2_4121 are separated by 24 nucleotides Pf6N2E2_4121 and Pf6N2E2_4122 overlap by 4 nucleotides
Pf6N2E2_4120 - Trk system potassium uptake protein TrkA, at 4,798,826 to 4,800,199
_4120
Pf6N2E2_4121 - Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-), at 4,800,224 to 4,801,534
_4121
Pf6N2E2_4122 - Methionyl-tRNA formyltransferase (EC 2.1.2.9), at 4,801,531 to 4,802,490
_4122
Position (kb)
4800
4801
4802 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4799.398 kb on - strand, within Pf6N2E2_4120 at 4799.508 kb on + strand, within Pf6N2E2_4120 at 4799.508 kb on + strand, within Pf6N2E2_4120 at 4799.508 kb on + strand, within Pf6N2E2_4120 at 4799.508 kb on + strand, within Pf6N2E2_4120 at 4799.508 kb on + strand, within Pf6N2E2_4120 at 4799.508 kb on + strand, within Pf6N2E2_4120 at 4799.509 kb on - strand, within Pf6N2E2_4120 at 4799.509 kb on - strand, within Pf6N2E2_4120 at 4799.509 kb on - strand, within Pf6N2E2_4120 at 4799.509 kb on - strand, within Pf6N2E2_4120 at 4799.509 kb on - strand, within Pf6N2E2_4120 at 4799.509 kb on - strand, within Pf6N2E2_4120 at 4799.509 kb on - strand, within Pf6N2E2_4120 at 4799.509 kb on - strand, within Pf6N2E2_4120 at 4799.509 kb on - strand, within Pf6N2E2_4120 at 4799.509 kb on - strand, within Pf6N2E2_4120 at 4799.552 kb on - strand, within Pf6N2E2_4120 at 4799.719 kb on - strand, within Pf6N2E2_4120 at 4799.722 kb on - strand, within Pf6N2E2_4120 at 4799.722 kb on - strand, within Pf6N2E2_4120 at 4799.722 kb on - strand, within Pf6N2E2_4120 at 4799.806 kb on + strand, within Pf6N2E2_4120 at 4799.806 kb on + strand, within Pf6N2E2_4120 at 4799.806 kb on + strand, within Pf6N2E2_4120 at 4799.806 kb on + strand, within Pf6N2E2_4120 at 4799.807 kb on - strand, within Pf6N2E2_4120 at 4799.807 kb on - strand, within Pf6N2E2_4120 at 4799.807 kb on - strand, within Pf6N2E2_4120 at 4799.807 kb on - strand, within Pf6N2E2_4120 at 4799.807 kb on - strand, within Pf6N2E2_4120 at 4799.808 kb on + strand, within Pf6N2E2_4120 at 4799.808 kb on + strand, within Pf6N2E2_4120 at 4799.808 kb on + strand, within Pf6N2E2_4120 at 4799.808 kb on + strand, within Pf6N2E2_4120 at 4799.808 kb on + strand, within Pf6N2E2_4120 at 4799.808 kb on + strand, within Pf6N2E2_4120 at 4799.808 kb on + strand, within Pf6N2E2_4120 at 4799.808 kb on + strand, within Pf6N2E2_4120 at 4799.808 kb on + strand, within Pf6N2E2_4120 at 4799.808 kb on + strand, within Pf6N2E2_4120 at 4799.808 kb on + strand, within Pf6N2E2_4120 at 4799.808 kb on + strand, within Pf6N2E2_4120 at 4799.808 kb on + strand, within Pf6N2E2_4120 at 4799.808 kb on + strand, within Pf6N2E2_4120 at 4799.808 kb on + strand, within Pf6N2E2_4120 at 4799.808 kb on + strand, within Pf6N2E2_4120 at 4799.808 kb on + strand, within Pf6N2E2_4120 at 4799.808 kb on + strand, within Pf6N2E2_4120 at 4799.808 kb on + strand, within Pf6N2E2_4120 at 4799.809 kb on - strand, within Pf6N2E2_4120 at 4799.809 kb on - strand, within Pf6N2E2_4120 at 4799.809 kb on - strand, within Pf6N2E2_4120 at 4799.809 kb on - strand, within Pf6N2E2_4120 at 4799.809 kb on - strand, within Pf6N2E2_4120 at 4799.809 kb on - strand, within Pf6N2E2_4120 at 4799.809 kb on - strand, within Pf6N2E2_4120 at 4799.809 kb on - strand, within Pf6N2E2_4120 at 4799.809 kb on - strand, within Pf6N2E2_4120 at 4799.809 kb on - strand, within Pf6N2E2_4120 at 4799.809 kb on - strand, within Pf6N2E2_4120 at 4799.809 kb on - strand, within Pf6N2E2_4120 at 4799.809 kb on - strand, within Pf6N2E2_4120 at 4799.809 kb on - strand, within Pf6N2E2_4120 at 4799.809 kb on - strand, within Pf6N2E2_4120 at 4799.809 kb on - strand, within Pf6N2E2_4120 at 4799.809 kb on - strand, within Pf6N2E2_4120 at 4799.809 kb on - strand, within Pf6N2E2_4120 at 4800.261 kb on + strand at 4800.262 kb on - strand at 4800.262 kb on - strand at 4800.264 kb on + strand at 4800.264 kb on + strand at 4800.264 kb on + strand at 4800.264 kb on + strand at 4800.265 kb on - strand at 4800.265 kb on - strand at 4800.265 kb on - strand at 4800.265 kb on - strand at 4800.436 kb on + strand, within Pf6N2E2_4121 at 4800.437 kb on - strand, within Pf6N2E2_4121 at 4800.437 kb on - strand, within Pf6N2E2_4121 at 4800.437 kb on - strand, within Pf6N2E2_4121 at 4800.437 kb on - strand, within Pf6N2E2_4121 at 4800.933 kb on + strand, within Pf6N2E2_4121 at 4800.934 kb on - strand, within Pf6N2E2_4121 at 4800.982 kb on - strand, within Pf6N2E2_4121 at 4802.495 kb on - strand at 4802.495 kb on - strand at 4802.495 kb on - strand at 4802.506 kb on - strand at 4802.506 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 4,799,398 - Pf6N2E2_4120 0.42 +0.2 4,799,508 + Pf6N2E2_4120 0.50 -0.6 4,799,508 + Pf6N2E2_4120 0.50 -1.1 4,799,508 + Pf6N2E2_4120 0.50 -2.2 4,799,508 + Pf6N2E2_4120 0.50 +0.3 4,799,508 + Pf6N2E2_4120 0.50 -0.9 4,799,508 + Pf6N2E2_4120 0.50 -4.2 4,799,509 - Pf6N2E2_4120 0.50 -0.3 4,799,509 - Pf6N2E2_4120 0.50 -0.0 4,799,509 - Pf6N2E2_4120 0.50 -1.4 4,799,509 - Pf6N2E2_4120 0.50 -4.6 4,799,509 - Pf6N2E2_4120 0.50 -0.1 4,799,509 - Pf6N2E2_4120 0.50 -1.1 4,799,509 - Pf6N2E2_4120 0.50 +0.1 4,799,509 - Pf6N2E2_4120 0.50 -1.2 4,799,509 - Pf6N2E2_4120 0.50 -1.1 4,799,509 - Pf6N2E2_4120 0.50 -0.7 4,799,552 - Pf6N2E2_4120 0.53 -2.1 4,799,719 - Pf6N2E2_4120 0.65 +0.1 4,799,722 - Pf6N2E2_4120 0.65 -1.0 4,799,722 - Pf6N2E2_4120 0.65 +1.7 4,799,722 - Pf6N2E2_4120 0.65 -0.2 4,799,806 + Pf6N2E2_4120 0.71 -1.5 4,799,806 + Pf6N2E2_4120 0.71 -1.2 4,799,806 + Pf6N2E2_4120 0.71 -0.9 4,799,806 + Pf6N2E2_4120 0.71 -1.0 4,799,807 - Pf6N2E2_4120 0.71 -1.1 4,799,807 - Pf6N2E2_4120 0.71 -0.7 4,799,807 - Pf6N2E2_4120 0.71 -0.6 4,799,807 - Pf6N2E2_4120 0.71 -0.8 4,799,807 - Pf6N2E2_4120 0.71 -1.2 4,799,808 + Pf6N2E2_4120 0.71 -1.6 4,799,808 + Pf6N2E2_4120 0.71 -0.2 4,799,808 + Pf6N2E2_4120 0.71 -3.1 4,799,808 + Pf6N2E2_4120 0.71 -1.7 4,799,808 + Pf6N2E2_4120 0.71 -3.4 4,799,808 + Pf6N2E2_4120 0.71 -0.5 4,799,808 + Pf6N2E2_4120 0.71 +0.1 4,799,808 + Pf6N2E2_4120 0.71 -0.5 4,799,808 + Pf6N2E2_4120 0.71 -0.2 4,799,808 + Pf6N2E2_4120 0.71 +0.3 4,799,808 + Pf6N2E2_4120 0.71 -2.9 4,799,808 + Pf6N2E2_4120 0.71 -0.7 4,799,808 + Pf6N2E2_4120 0.71 -1.2 4,799,808 + Pf6N2E2_4120 0.71 -1.1 4,799,808 + Pf6N2E2_4120 0.71 -1.1 4,799,808 + Pf6N2E2_4120 0.71 -1.0 4,799,808 + Pf6N2E2_4120 0.71 -1.4 4,799,808 + Pf6N2E2_4120 0.71 -0.5 4,799,808 + Pf6N2E2_4120 0.71 -1.0 4,799,809 - Pf6N2E2_4120 0.72 -1.2 4,799,809 - Pf6N2E2_4120 0.72 +1.7 4,799,809 - Pf6N2E2_4120 0.72 -3.2 4,799,809 - Pf6N2E2_4120 0.72 -2.1 4,799,809 - Pf6N2E2_4120 0.72 -0.6 4,799,809 - Pf6N2E2_4120 0.72 -1.3 4,799,809 - Pf6N2E2_4120 0.72 -0.5 4,799,809 - Pf6N2E2_4120 0.72 -1.3 4,799,809 - Pf6N2E2_4120 0.72 -0.7 4,799,809 - Pf6N2E2_4120 0.72 -3.3 4,799,809 - Pf6N2E2_4120 0.72 -1.6 4,799,809 - Pf6N2E2_4120 0.72 -1.6 4,799,809 - Pf6N2E2_4120 0.72 -0.2 4,799,809 - Pf6N2E2_4120 0.72 -0.3 4,799,809 - Pf6N2E2_4120 0.72 -1.5 4,799,809 - Pf6N2E2_4120 0.72 -1.0 4,799,809 - Pf6N2E2_4120 0.72 -0.9 4,799,809 - Pf6N2E2_4120 0.72 -0.4 4,800,261 + -0.3 4,800,262 - -2.0 4,800,262 - -0.9 4,800,264 + +1.7 4,800,264 + -1.3 4,800,264 + -1.9 4,800,264 + -0.3 4,800,265 - -2.4 4,800,265 - -0.1 4,800,265 - -1.0 4,800,265 - -1.1 4,800,436 + Pf6N2E2_4121 0.16 -2.2 4,800,437 - Pf6N2E2_4121 0.16 -0.6 4,800,437 - Pf6N2E2_4121 0.16 -1.8 4,800,437 - Pf6N2E2_4121 0.16 -0.9 4,800,437 - Pf6N2E2_4121 0.16 -1.1 4,800,933 + Pf6N2E2_4121 0.54 -1.1 4,800,934 - Pf6N2E2_4121 0.54 -1.3 4,800,982 - Pf6N2E2_4121 0.58 -2.1 4,802,495 - -1.5 4,802,495 - +0.1 4,802,495 - -0.3 4,802,506 - +1.2 4,802,506 - +0.1
Or see this region's nucleotide sequence