Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4121

Experiment: nitrogen source nitrite 0.5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4120 and Pf6N2E2_4121 are separated by 24 nucleotidesPf6N2E2_4121 and Pf6N2E2_4122 overlap by 4 nucleotides Pf6N2E2_4120 - Trk system potassium uptake protein TrkA, at 4,798,826 to 4,800,199 _4120 Pf6N2E2_4121 - Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-), at 4,800,224 to 4,801,534 _4121 Pf6N2E2_4122 - Methionyl-tRNA formyltransferase (EC 2.1.2.9), at 4,801,531 to 4,802,490 _4122 Position (kb) 4800 4801 4802Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4799.398 kb on - strand, within Pf6N2E2_4120at 4799.508 kb on + strand, within Pf6N2E2_4120at 4799.508 kb on + strand, within Pf6N2E2_4120at 4799.508 kb on + strand, within Pf6N2E2_4120at 4799.508 kb on + strand, within Pf6N2E2_4120at 4799.508 kb on + strand, within Pf6N2E2_4120at 4799.508 kb on + strand, within Pf6N2E2_4120at 4799.509 kb on - strand, within Pf6N2E2_4120at 4799.509 kb on - strand, within Pf6N2E2_4120at 4799.509 kb on - strand, within Pf6N2E2_4120at 4799.509 kb on - strand, within Pf6N2E2_4120at 4799.509 kb on - strand, within Pf6N2E2_4120at 4799.509 kb on - strand, within Pf6N2E2_4120at 4799.509 kb on - strand, within Pf6N2E2_4120at 4799.509 kb on - strand, within Pf6N2E2_4120at 4799.509 kb on - strand, within Pf6N2E2_4120at 4799.509 kb on - strand, within Pf6N2E2_4120at 4799.552 kb on - strand, within Pf6N2E2_4120at 4799.719 kb on - strand, within Pf6N2E2_4120at 4799.722 kb on - strand, within Pf6N2E2_4120at 4799.722 kb on - strand, within Pf6N2E2_4120at 4799.722 kb on - strand, within Pf6N2E2_4120at 4799.806 kb on + strand, within Pf6N2E2_4120at 4799.806 kb on + strand, within Pf6N2E2_4120at 4799.806 kb on + strand, within Pf6N2E2_4120at 4799.806 kb on + strand, within Pf6N2E2_4120at 4799.807 kb on - strand, within Pf6N2E2_4120at 4799.807 kb on - strand, within Pf6N2E2_4120at 4799.807 kb on - strand, within Pf6N2E2_4120at 4799.807 kb on - strand, within Pf6N2E2_4120at 4799.807 kb on - strand, within Pf6N2E2_4120at 4799.808 kb on + strand, within Pf6N2E2_4120at 4799.808 kb on + strand, within Pf6N2E2_4120at 4799.808 kb on + strand, within Pf6N2E2_4120at 4799.808 kb on + strand, within Pf6N2E2_4120at 4799.808 kb on + strand, within Pf6N2E2_4120at 4799.808 kb on + strand, within Pf6N2E2_4120at 4799.808 kb on + strand, within Pf6N2E2_4120at 4799.808 kb on + strand, within Pf6N2E2_4120at 4799.808 kb on + strand, within Pf6N2E2_4120at 4799.808 kb on + strand, within Pf6N2E2_4120at 4799.808 kb on + strand, within Pf6N2E2_4120at 4799.808 kb on + strand, within Pf6N2E2_4120at 4799.808 kb on + strand, within Pf6N2E2_4120at 4799.808 kb on + strand, within Pf6N2E2_4120at 4799.808 kb on + strand, within Pf6N2E2_4120at 4799.808 kb on + strand, within Pf6N2E2_4120at 4799.808 kb on + strand, within Pf6N2E2_4120at 4799.808 kb on + strand, within Pf6N2E2_4120at 4799.808 kb on + strand, within Pf6N2E2_4120at 4799.809 kb on - strand, within Pf6N2E2_4120at 4799.809 kb on - strand, within Pf6N2E2_4120at 4799.809 kb on - strand, within Pf6N2E2_4120at 4799.809 kb on - strand, within Pf6N2E2_4120at 4799.809 kb on - strand, within Pf6N2E2_4120at 4799.809 kb on - strand, within Pf6N2E2_4120at 4799.809 kb on - strand, within Pf6N2E2_4120at 4799.809 kb on - strand, within Pf6N2E2_4120at 4799.809 kb on - strand, within Pf6N2E2_4120at 4799.809 kb on - strand, within Pf6N2E2_4120at 4799.809 kb on - strand, within Pf6N2E2_4120at 4799.809 kb on - strand, within Pf6N2E2_4120at 4799.809 kb on - strand, within Pf6N2E2_4120at 4799.809 kb on - strand, within Pf6N2E2_4120at 4799.809 kb on - strand, within Pf6N2E2_4120at 4799.809 kb on - strand, within Pf6N2E2_4120at 4799.809 kb on - strand, within Pf6N2E2_4120at 4799.809 kb on - strand, within Pf6N2E2_4120at 4800.261 kb on + strandat 4800.262 kb on - strandat 4800.262 kb on - strandat 4800.264 kb on + strandat 4800.264 kb on + strandat 4800.264 kb on + strandat 4800.264 kb on + strandat 4800.265 kb on - strandat 4800.265 kb on - strandat 4800.265 kb on - strandat 4800.265 kb on - strandat 4800.436 kb on + strand, within Pf6N2E2_4121at 4800.437 kb on - strand, within Pf6N2E2_4121at 4800.437 kb on - strand, within Pf6N2E2_4121at 4800.437 kb on - strand, within Pf6N2E2_4121at 4800.437 kb on - strand, within Pf6N2E2_4121at 4800.933 kb on + strand, within Pf6N2E2_4121at 4800.934 kb on - strand, within Pf6N2E2_4121at 4800.982 kb on - strand, within Pf6N2E2_4121at 4802.495 kb on - strandat 4802.495 kb on - strandat 4802.495 kb on - strandat 4802.506 kb on - strandat 4802.506 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM
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4,799,398 - Pf6N2E2_4120 0.42 +0.2
4,799,508 + Pf6N2E2_4120 0.50 -0.6
4,799,508 + Pf6N2E2_4120 0.50 -1.1
4,799,508 + Pf6N2E2_4120 0.50 -2.2
4,799,508 + Pf6N2E2_4120 0.50 +0.3
4,799,508 + Pf6N2E2_4120 0.50 -0.9
4,799,508 + Pf6N2E2_4120 0.50 -4.2
4,799,509 - Pf6N2E2_4120 0.50 -0.3
4,799,509 - Pf6N2E2_4120 0.50 -0.0
4,799,509 - Pf6N2E2_4120 0.50 -1.4
4,799,509 - Pf6N2E2_4120 0.50 -4.6
4,799,509 - Pf6N2E2_4120 0.50 -0.1
4,799,509 - Pf6N2E2_4120 0.50 -1.1
4,799,509 - Pf6N2E2_4120 0.50 +0.1
4,799,509 - Pf6N2E2_4120 0.50 -1.2
4,799,509 - Pf6N2E2_4120 0.50 -1.1
4,799,509 - Pf6N2E2_4120 0.50 -0.7
4,799,552 - Pf6N2E2_4120 0.53 -2.1
4,799,719 - Pf6N2E2_4120 0.65 +0.1
4,799,722 - Pf6N2E2_4120 0.65 -1.0
4,799,722 - Pf6N2E2_4120 0.65 +1.7
4,799,722 - Pf6N2E2_4120 0.65 -0.2
4,799,806 + Pf6N2E2_4120 0.71 -1.5
4,799,806 + Pf6N2E2_4120 0.71 -1.2
4,799,806 + Pf6N2E2_4120 0.71 -0.9
4,799,806 + Pf6N2E2_4120 0.71 -1.0
4,799,807 - Pf6N2E2_4120 0.71 -1.1
4,799,807 - Pf6N2E2_4120 0.71 -0.7
4,799,807 - Pf6N2E2_4120 0.71 -0.6
4,799,807 - Pf6N2E2_4120 0.71 -0.8
4,799,807 - Pf6N2E2_4120 0.71 -1.2
4,799,808 + Pf6N2E2_4120 0.71 -1.6
4,799,808 + Pf6N2E2_4120 0.71 -0.2
4,799,808 + Pf6N2E2_4120 0.71 -3.1
4,799,808 + Pf6N2E2_4120 0.71 -1.7
4,799,808 + Pf6N2E2_4120 0.71 -3.4
4,799,808 + Pf6N2E2_4120 0.71 -0.5
4,799,808 + Pf6N2E2_4120 0.71 +0.1
4,799,808 + Pf6N2E2_4120 0.71 -0.5
4,799,808 + Pf6N2E2_4120 0.71 -0.2
4,799,808 + Pf6N2E2_4120 0.71 +0.3
4,799,808 + Pf6N2E2_4120 0.71 -2.9
4,799,808 + Pf6N2E2_4120 0.71 -0.7
4,799,808 + Pf6N2E2_4120 0.71 -1.2
4,799,808 + Pf6N2E2_4120 0.71 -1.1
4,799,808 + Pf6N2E2_4120 0.71 -1.1
4,799,808 + Pf6N2E2_4120 0.71 -1.0
4,799,808 + Pf6N2E2_4120 0.71 -1.4
4,799,808 + Pf6N2E2_4120 0.71 -0.5
4,799,808 + Pf6N2E2_4120 0.71 -1.0
4,799,809 - Pf6N2E2_4120 0.72 -1.2
4,799,809 - Pf6N2E2_4120 0.72 +1.7
4,799,809 - Pf6N2E2_4120 0.72 -3.2
4,799,809 - Pf6N2E2_4120 0.72 -2.1
4,799,809 - Pf6N2E2_4120 0.72 -0.6
4,799,809 - Pf6N2E2_4120 0.72 -1.3
4,799,809 - Pf6N2E2_4120 0.72 -0.5
4,799,809 - Pf6N2E2_4120 0.72 -1.3
4,799,809 - Pf6N2E2_4120 0.72 -0.7
4,799,809 - Pf6N2E2_4120 0.72 -3.3
4,799,809 - Pf6N2E2_4120 0.72 -1.6
4,799,809 - Pf6N2E2_4120 0.72 -1.6
4,799,809 - Pf6N2E2_4120 0.72 -0.2
4,799,809 - Pf6N2E2_4120 0.72 -0.3
4,799,809 - Pf6N2E2_4120 0.72 -1.5
4,799,809 - Pf6N2E2_4120 0.72 -1.0
4,799,809 - Pf6N2E2_4120 0.72 -0.9
4,799,809 - Pf6N2E2_4120 0.72 -0.4
4,800,261 + -0.3
4,800,262 - -2.0
4,800,262 - -0.9
4,800,264 + +1.7
4,800,264 + -1.3
4,800,264 + -1.9
4,800,264 + -0.3
4,800,265 - -2.4
4,800,265 - -0.1
4,800,265 - -1.0
4,800,265 - -1.1
4,800,436 + Pf6N2E2_4121 0.16 -2.2
4,800,437 - Pf6N2E2_4121 0.16 -0.6
4,800,437 - Pf6N2E2_4121 0.16 -1.8
4,800,437 - Pf6N2E2_4121 0.16 -0.9
4,800,437 - Pf6N2E2_4121 0.16 -1.1
4,800,933 + Pf6N2E2_4121 0.54 -1.1
4,800,934 - Pf6N2E2_4121 0.54 -1.3
4,800,982 - Pf6N2E2_4121 0.58 -2.1
4,802,495 - -1.5
4,802,495 - +0.1
4,802,495 - -0.3
4,802,506 - +1.2
4,802,506 - +0.1

Or see this region's nucleotide sequence