Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_200 and Pf6N2E2_201 overlap by 10 nucleotides Pf6N2E2_201 and Pf6N2E2_202 overlap by 4 nucleotides
Pf6N2E2_200 - Possible glycosyltransferase, at 250,861 to 251,967
_200
Pf6N2E2_201 - UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14), at 251,958 to 253,067
_201
Pf6N2E2_202 - 4Fe-4S ferredoxin, iron-sulfur binding, at 253,064 to 254,650
_202
Position (kb) 251
252
253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 251.087 kb on + strand, within Pf6N2E2_200 at 251.088 kb on - strand, within Pf6N2E2_200 at 251.222 kb on - strand, within Pf6N2E2_200 at 251.222 kb on - strand, within Pf6N2E2_200 at 251.422 kb on + strand, within Pf6N2E2_200 at 251.423 kb on - strand, within Pf6N2E2_200 at 251.476 kb on + strand, within Pf6N2E2_200 at 251.476 kb on + strand, within Pf6N2E2_200 at 251.477 kb on - strand, within Pf6N2E2_200 at 251.544 kb on - strand, within Pf6N2E2_200 at 251.574 kb on - strand, within Pf6N2E2_200 at 251.870 kb on - strand at 251.954 kb on + strand at 251.954 kb on + strand at 251.954 kb on + strand at 251.955 kb on - strand at 251.955 kb on - strand at 251.955 kb on - strand at 251.977 kb on + strand at 251.977 kb on + strand at 252.056 kb on - strand at 252.241 kb on + strand, within Pf6N2E2_201 at 252.242 kb on - strand, within Pf6N2E2_201 at 252.242 kb on - strand, within Pf6N2E2_201 at 252.242 kb on - strand, within Pf6N2E2_201 at 252.274 kb on + strand, within Pf6N2E2_201 at 252.274 kb on + strand, within Pf6N2E2_201 at 252.274 kb on + strand, within Pf6N2E2_201 at 252.688 kb on - strand, within Pf6N2E2_201 at 252.688 kb on - strand, within Pf6N2E2_201 at 253.053 kb on + strand at 253.054 kb on - strand at 253.054 kb on - strand at 253.054 kb on - strand at 253.091 kb on + strand at 253.091 kb on + strand at 253.091 kb on + strand at 253.183 kb on + strand at 253.183 kb on + strand at 253.183 kb on + strand at 253.184 kb on - strand at 253.338 kb on + strand, within Pf6N2E2_202 at 253.338 kb on + strand, within Pf6N2E2_202 at 253.339 kb on - strand, within Pf6N2E2_202 at 253.472 kb on - strand, within Pf6N2E2_202 at 253.472 kb on - strand, within Pf6N2E2_202 at 253.472 kb on - strand, within Pf6N2E2_202 at 253.604 kb on - strand, within Pf6N2E2_202 at 253.941 kb on + strand, within Pf6N2E2_202 at 253.941 kb on + strand, within Pf6N2E2_202 at 253.942 kb on - strand, within Pf6N2E2_202 at 253.942 kb on - strand, within Pf6N2E2_202 at 253.942 kb on - strand, within Pf6N2E2_202 at 253.942 kb on - strand, within Pf6N2E2_202 at 253.942 kb on - strand, within Pf6N2E2_202 at 253.942 kb on - strand, within Pf6N2E2_202 at 253.942 kb on - strand, within Pf6N2E2_202 at 253.942 kb on - strand, within Pf6N2E2_202 at 253.942 kb on - strand, within Pf6N2E2_202 at 253.942 kb on - strand, within Pf6N2E2_202
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 251,087 + Pf6N2E2_200 0.20 -2.1 251,088 - Pf6N2E2_200 0.21 -0.2 251,222 - Pf6N2E2_200 0.33 -2.1 251,222 - Pf6N2E2_200 0.33 -1.2 251,422 + Pf6N2E2_200 0.51 -1.0 251,423 - Pf6N2E2_200 0.51 +1.8 251,476 + Pf6N2E2_200 0.56 -0.8 251,476 + Pf6N2E2_200 0.56 -3.5 251,477 - Pf6N2E2_200 0.56 +0.5 251,544 - Pf6N2E2_200 0.62 -1.9 251,574 - Pf6N2E2_200 0.64 +0.6 251,870 - +1.8 251,954 + -0.0 251,954 + -1.0 251,954 + -0.4 251,955 - +0.9 251,955 - -1.3 251,955 - +0.5 251,977 + +0.6 251,977 + -1.1 252,056 - +0.0 252,241 + Pf6N2E2_201 0.25 +1.2 252,242 - Pf6N2E2_201 0.26 -1.5 252,242 - Pf6N2E2_201 0.26 +0.9 252,242 - Pf6N2E2_201 0.26 -1.1 252,274 + Pf6N2E2_201 0.28 +0.3 252,274 + Pf6N2E2_201 0.28 -0.4 252,274 + Pf6N2E2_201 0.28 +1.2 252,688 - Pf6N2E2_201 0.66 +1.6 252,688 - Pf6N2E2_201 0.66 +1.8 253,053 + +0.0 253,054 - -0.1 253,054 - +0.6 253,054 - +1.8 253,091 + -0.5 253,091 + +0.2 253,091 + -0.6 253,183 + +0.0 253,183 + +0.0 253,183 + -0.6 253,184 - +0.4 253,338 + Pf6N2E2_202 0.17 +1.3 253,338 + Pf6N2E2_202 0.17 +0.2 253,339 - Pf6N2E2_202 0.17 +1.0 253,472 - Pf6N2E2_202 0.26 -0.9 253,472 - Pf6N2E2_202 0.26 -1.2 253,472 - Pf6N2E2_202 0.26 -0.5 253,604 - Pf6N2E2_202 0.34 +1.8 253,941 + Pf6N2E2_202 0.55 +0.2 253,941 + Pf6N2E2_202 0.55 -1.0 253,942 - Pf6N2E2_202 0.55 +0.2 253,942 - Pf6N2E2_202 0.55 -0.5 253,942 - Pf6N2E2_202 0.55 +1.8 253,942 - Pf6N2E2_202 0.55 +2.8 253,942 - Pf6N2E2_202 0.55 -1.0 253,942 - Pf6N2E2_202 0.55 +0.4 253,942 - Pf6N2E2_202 0.55 -0.6 253,942 - Pf6N2E2_202 0.55 +1.8 253,942 - Pf6N2E2_202 0.55 +0.2 253,942 - Pf6N2E2_202 0.55 +0.6
Or see this region's nucleotide sequence