Experiment: nitrogen source nitrite 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_761 and Pf6N2E2_762 are separated by 183 nucleotides Pf6N2E2_762 and Pf6N2E2_763 are separated by 341 nucleotides
Pf6N2E2_761 - Hemolysin-type calcium-binding region, at 872,037 to 873,326
_761
Pf6N2E2_762 - FIG00960186: hypothetical protein, at 873,510 to 873,776
_762
Pf6N2E2_763 - Sigma-54 dependent transcriptional regulator, at 874,118 to 875,443
_763
Position (kb) 873
874 Strain fitness (log2 ratio) -2
-1
0
1
2 at 872.606 kb on + strand, within Pf6N2E2_761 at 872.606 kb on + strand, within Pf6N2E2_761 at 872.606 kb on + strand, within Pf6N2E2_761 at 872.606 kb on + strand, within Pf6N2E2_761 at 872.606 kb on + strand, within Pf6N2E2_761 at 872.606 kb on + strand, within Pf6N2E2_761 at 872.606 kb on + strand, within Pf6N2E2_761 at 872.607 kb on - strand, within Pf6N2E2_761 at 872.607 kb on - strand, within Pf6N2E2_761 at 872.607 kb on - strand, within Pf6N2E2_761 at 872.646 kb on - strand, within Pf6N2E2_761 at 872.646 kb on - strand, within Pf6N2E2_761 at 872.756 kb on - strand, within Pf6N2E2_761 at 872.796 kb on + strand, within Pf6N2E2_761 at 872.978 kb on - strand, within Pf6N2E2_761 at 873.070 kb on + strand, within Pf6N2E2_761 at 873.212 kb on + strand at 873.218 kb on + strand at 873.218 kb on + strand at 873.218 kb on + strand at 873.218 kb on + strand at 873.218 kb on + strand at 873.218 kb on + strand at 873.218 kb on + strand at 873.218 kb on + strand at 873.218 kb on + strand at 873.219 kb on - strand at 873.219 kb on - strand at 873.219 kb on - strand at 873.452 kb on - strand at 873.452 kb on - strand at 873.463 kb on + strand at 873.463 kb on + strand at 873.464 kb on - strand at 873.464 kb on - strand at 873.464 kb on - strand at 873.539 kb on + strand, within Pf6N2E2_762 at 873.539 kb on + strand, within Pf6N2E2_762 at 873.539 kb on + strand, within Pf6N2E2_762 at 873.540 kb on - strand, within Pf6N2E2_762 at 873.540 kb on - strand, within Pf6N2E2_762 at 873.540 kb on - strand, within Pf6N2E2_762 at 873.540 kb on - strand, within Pf6N2E2_762 at 873.540 kb on - strand, within Pf6N2E2_762 at 873.540 kb on - strand, within Pf6N2E2_762 at 873.540 kb on - strand, within Pf6N2E2_762 at 873.540 kb on - strand, within Pf6N2E2_762 at 873.540 kb on - strand, within Pf6N2E2_762 at 873.540 kb on - strand, within Pf6N2E2_762 at 873.540 kb on - strand, within Pf6N2E2_762 at 873.541 kb on + strand, within Pf6N2E2_762 at 873.542 kb on - strand, within Pf6N2E2_762 at 873.542 kb on - strand, within Pf6N2E2_762 at 873.606 kb on - strand, within Pf6N2E2_762 at 873.608 kb on - strand, within Pf6N2E2_762 at 873.608 kb on - strand, within Pf6N2E2_762 at 873.672 kb on - strand, within Pf6N2E2_762 at 873.672 kb on - strand, within Pf6N2E2_762 at 873.789 kb on + strand at 873.790 kb on - strand at 873.844 kb on - strand at 873.849 kb on + strand at 873.849 kb on + strand at 873.849 kb on + strand at 873.849 kb on + strand at 873.849 kb on + strand at 873.849 kb on + strand at 873.849 kb on + strand at 873.850 kb on - strand at 873.850 kb on - strand at 873.850 kb on - strand at 873.850 kb on - strand at 873.850 kb on - strand at 873.850 kb on - strand at 873.884 kb on + strand at 873.885 kb on - strand at 873.885 kb on - strand at 873.885 kb on - strand at 873.885 kb on - strand at 873.967 kb on - strand at 873.987 kb on - strand at 874.022 kb on + strand at 874.023 kb on - strand at 874.023 kb on - strand at 874.132 kb on + strand at 874.420 kb on + strand, within Pf6N2E2_763 at 874.421 kb on - strand, within Pf6N2E2_763
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 1mM remove 872,606 + Pf6N2E2_761 0.44 +1.3 872,606 + Pf6N2E2_761 0.44 +0.8 872,606 + Pf6N2E2_761 0.44 +0.2 872,606 + Pf6N2E2_761 0.44 -0.4 872,606 + Pf6N2E2_761 0.44 -1.0 872,606 + Pf6N2E2_761 0.44 -0.3 872,606 + Pf6N2E2_761 0.44 -0.1 872,607 - Pf6N2E2_761 0.44 -1.7 872,607 - Pf6N2E2_761 0.44 -0.6 872,607 - Pf6N2E2_761 0.44 -1.1 872,646 - Pf6N2E2_761 0.47 +1.4 872,646 - Pf6N2E2_761 0.47 -0.2 872,756 - Pf6N2E2_761 0.56 -0.5 872,796 + Pf6N2E2_761 0.59 +1.2 872,978 - Pf6N2E2_761 0.73 -0.1 873,070 + Pf6N2E2_761 0.80 +0.3 873,212 + -0.6 873,218 + -0.1 873,218 + -0.9 873,218 + -0.1 873,218 + +1.4 873,218 + -2.1 873,218 + -1.9 873,218 + +0.8 873,218 + -0.7 873,218 + -0.3 873,219 - +1.4 873,219 - -0.4 873,219 - -1.5 873,452 - +1.8 873,452 - +0.4 873,463 + +0.2 873,463 + -0.2 873,464 - -1.2 873,464 - -1.3 873,464 - +0.5 873,539 + Pf6N2E2_762 0.11 +0.9 873,539 + Pf6N2E2_762 0.11 +0.1 873,539 + Pf6N2E2_762 0.11 -0.6 873,540 - Pf6N2E2_762 0.11 -1.8 873,540 - Pf6N2E2_762 0.11 +0.2 873,540 - Pf6N2E2_762 0.11 +0.4 873,540 - Pf6N2E2_762 0.11 +0.1 873,540 - Pf6N2E2_762 0.11 +0.7 873,540 - Pf6N2E2_762 0.11 +2.3 873,540 - Pf6N2E2_762 0.11 -0.2 873,540 - Pf6N2E2_762 0.11 +1.3 873,540 - Pf6N2E2_762 0.11 +1.3 873,540 - Pf6N2E2_762 0.11 +2.0 873,540 - Pf6N2E2_762 0.11 +0.3 873,541 + Pf6N2E2_762 0.12 +1.0 873,542 - Pf6N2E2_762 0.12 +0.3 873,542 - Pf6N2E2_762 0.12 +1.5 873,606 - Pf6N2E2_762 0.36 +0.4 873,608 - Pf6N2E2_762 0.37 +0.8 873,608 - Pf6N2E2_762 0.37 +1.3 873,672 - Pf6N2E2_762 0.61 +1.0 873,672 - Pf6N2E2_762 0.61 +0.6 873,789 + -0.2 873,790 - -0.7 873,844 - +1.1 873,849 + -1.9 873,849 + -0.2 873,849 + +0.3 873,849 + +0.7 873,849 + +1.6 873,849 + +0.9 873,849 + +1.4 873,850 - +2.4 873,850 - +0.6 873,850 - +1.4 873,850 - +0.7 873,850 - -1.2 873,850 - +0.0 873,884 + +1.4 873,885 - -1.9 873,885 - +0.4 873,885 - +0.3 873,885 - +1.4 873,967 - -0.2 873,987 - -1.4 874,022 + +0.8 874,023 - +1.4 874,023 - +0.0 874,132 + +0.0 874,420 + Pf6N2E2_763 0.23 +0.0 874,421 - Pf6N2E2_763 0.23 -0.1
Or see this region's nucleotide sequence