Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3874

Experiment: nitrogen source nitrite 1mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 1mM
4,503,998	+		Pf6N2E2_3873	0.46	+0.5
4,503,998	+		Pf6N2E2_3873	0.46	-3.2
4,503,998	+		Pf6N2E2_3873	0.46	-0.5
4,503,998	+		Pf6N2E2_3873	0.46	-1.1
4,503,998	+		Pf6N2E2_3873	0.46	-2.0
4,503,999	-		Pf6N2E2_3873	0.46	-0.5
4,503,999	-		Pf6N2E2_3873	0.46	-2.4
4,503,999	-		Pf6N2E2_3873	0.46	-2.9
4,503,999	-		Pf6N2E2_3873	0.46	-0.5
4,503,999	-		Pf6N2E2_3873	0.46	-1.4
4,503,999	-		Pf6N2E2_3873	0.46	-2.0
4,503,999	-		Pf6N2E2_3873	0.46	+1.5
4,503,999	-		Pf6N2E2_3873	0.46	+0.8
4,503,999	-		Pf6N2E2_3873	0.46	-2.1
4,503,999	-		Pf6N2E2_3873	0.46	+0.0
4,503,999	-		Pf6N2E2_3873	0.46	+1.5
4,504,013	+		Pf6N2E2_3873	0.47	-1.3
4,504,013	+		Pf6N2E2_3873	0.47	+1.1
4,504,013	+		Pf6N2E2_3873	0.47	-1.8
4,504,013	+		Pf6N2E2_3873	0.47	+1.5
4,504,013	+		Pf6N2E2_3873	0.47	+1.5
4,504,014	-		Pf6N2E2_3873	0.47	+0.5
4,504,014	-		Pf6N2E2_3873	0.47	+1.5
4,504,014	-		Pf6N2E2_3873	0.47	-1.5
4,504,014	-		Pf6N2E2_3873	0.47	+1.5
4,504,028	-		Pf6N2E2_3873	0.49	-0.3
4,504,028	-		Pf6N2E2_3873	0.49	-0.3
4,504,028	-		Pf6N2E2_3873	0.49	-0.2
4,504,028	-		Pf6N2E2_3873	0.49	-2.0
4,504,028	-		Pf6N2E2_3873	0.49	-2.0
4,504,049	+		Pf6N2E2_3873	0.50	+0.8
4,504,082	+		Pf6N2E2_3873	0.53	-0.9
4,504,083	-		Pf6N2E2_3873	0.53	-1.3
4,504,083	-		Pf6N2E2_3873	0.53	-0.1
4,504,083	-		Pf6N2E2_3873	0.53	-0.1
4,504,220	+		Pf6N2E2_3873	0.63	-2.8
4,504,220	+		Pf6N2E2_3873	0.63	-1.7
4,504,221	-		Pf6N2E2_3873	0.64	+1.5
4,504,221	-		Pf6N2E2_3873	0.64	-1.7
4,504,221	-		Pf6N2E2_3873	0.64	-1.5
4,504,221	-		Pf6N2E2_3873	0.64	+1.5
4,504,250	+		Pf6N2E2_3873	0.66	-1.8
4,504,250	+		Pf6N2E2_3873	0.66	-0.5
4,504,251	-		Pf6N2E2_3873	0.66	-0.5
4,504,251	-		Pf6N2E2_3873	0.66	-0.5
4,504,251	-		Pf6N2E2_3873	0.66	+0.5
4,504,433	+		Pf6N2E2_3873	0.80	-2.3
4,504,494	+		Pf6N2E2_3873	0.85	-1.3
4,504,495	-		Pf6N2E2_3873	0.85	-1.3
4,504,495	-		Pf6N2E2_3873	0.85	-0.1
4,504,495	-		Pf6N2E2_3873	0.85	-1.8
4,504,498	+		Pf6N2E2_3873	0.85	+1.5
4,504,498	+		Pf6N2E2_3873	0.85	-0.2
4,504,498	+		Pf6N2E2_3873	0.85	-1.8
4,504,498	+		Pf6N2E2_3873	0.85	+0.5
4,504,498	+		Pf6N2E2_3873	0.85	-1.3
4,504,498	+		Pf6N2E2_3873	0.85	+0.5
4,504,498	+		Pf6N2E2_3873	0.85	+0.5
4,504,498	+		Pf6N2E2_3873	0.85	-2.3
4,504,499	-		Pf6N2E2_3873	0.85	-1.3
4,504,499	-		Pf6N2E2_3873	0.85	-0.1
4,504,499	-		Pf6N2E2_3873	0.85	-0.8
4,504,499	-		Pf6N2E2_3873	0.85	-1.4
4,504,499	-		Pf6N2E2_3873	0.85	-1.4
4,504,499	-		Pf6N2E2_3873	0.85	-1.0
4,504,499	-		Pf6N2E2_3873	0.85	-1.1
4,504,499	-		Pf6N2E2_3873	0.85	+1.5
4,504,499	-		Pf6N2E2_3873	0.85	-2.5
4,504,499	-		Pf6N2E2_3873	0.85	-0.8
4,504,557	+		Pf6N2E2_3873	0.90	-0.4
4,504,557	+		Pf6N2E2_3873	0.90	+0.0
4,504,557	+		Pf6N2E2_3873	0.90	-0.8
4,504,557	+		Pf6N2E2_3873	0.90	-0.1
4,504,557	+		Pf6N2E2_3873	0.90	-0.1
4,504,557	+		Pf6N2E2_3873	0.90	-1.9
4,504,557	+		Pf6N2E2_3873	0.90	-1.3
4,504,557	+		Pf6N2E2_3873	0.90	+0.4
4,504,558	-		Pf6N2E2_3873	0.90	-1.0
4,504,558	-		Pf6N2E2_3873	0.90	+1.5
4,504,558	-		Pf6N2E2_3873	0.90	-0.1
4,504,558	-		Pf6N2E2_3873	0.90	-2.3
4,504,558	-		Pf6N2E2_3873	0.90	+0.3
4,504,558	-		Pf6N2E2_3873	0.90	-1.6
4,504,559	+		Pf6N2E2_3873	0.90	+1.5
4,504,559	+		Pf6N2E2_3873	0.90	-0.0
4,504,559	+		Pf6N2E2_3873	0.90	+0.5
4,504,559	+		Pf6N2E2_3873	0.90	+1.0
4,504,559	+		Pf6N2E2_3873	0.90	-0.6
4,504,559	+		Pf6N2E2_3873	0.90	-0.9
4,504,560	-		Pf6N2E2_3873	0.90	+0.5
4,504,560	-		Pf6N2E2_3873	0.90	-1.1
4,504,560	-		Pf6N2E2_3873	0.90	-0.1
4,504,560	-		Pf6N2E2_3873	0.90	-0.8
4,504,560	-		Pf6N2E2_3873	0.90	-4.1
4,504,560	-		Pf6N2E2_3873	0.90	-0.1
4,504,560	-		Pf6N2E2_3873	0.90	+1.5
4,504,560	-		Pf6N2E2_3873	0.90	-2.4
4,504,560	-		Pf6N2E2_3873	0.90	-0.0
4,504,560	-		Pf6N2E2_3873	0.90	-0.1
4,504,560	-		Pf6N2E2_3873	0.90	+0.5
4,504,560	-		Pf6N2E2_3873	0.90	-1.1
4,504,560	-		Pf6N2E2_3873	0.90	+1.5
4,504,560	-		Pf6N2E2_3873	0.90	-2.3
4,504,668	+				+1.5
4,504,668	+				-0.1
4,504,669	-				+0.3
4,504,669	-				+1.5
4,504,669	-				-0.8
4,504,669	-				+1.5
4,504,669	-				+1.5
4,504,669	-				-0.8
4,504,671	+				-3.2
4,504,671	+				-0.6
4,504,671	+				-1.5
4,504,671	+				+1.5
4,504,671	+				+1.2
4,504,671	+				+0.8
4,504,671	+				-1.1
4,504,672	-				+1.3
4,504,672	-				+1.5
4,504,672	-				-0.1
4,504,672	-				-0.1
4,504,672	-				-0.7
4,504,672	-				-0.5
4,504,672	-				-2.1
4,504,672	-				+1.5
4,504,672	-				+0.3
4,504,704	+				+1.5
4,504,704	+				-0.8
4,504,705	-				+0.1
4,504,714	+				-0.5
4,504,714	+				+0.6
4,504,715	-				+1.7
4,504,781	+				-1.1
4,504,781	+				-0.7
4,504,781	+				-0.5
4,504,824	-				-1.2
4,504,826	+				-0.7
4,504,826	+				+0.5
4,504,827	-				-0.4
4,504,827	-				-1.3
4,504,827	-				-1.1
4,504,830	+				-1.5
4,504,830	+				-2.0
4,504,831	-				-1.8
4,504,831	-				-0.2
4,504,846	+				-0.5
4,504,858	+				-0.1
4,504,858	+				-0.1
4,504,859	-				-0.5
4,504,870	+				-0.5
4,504,870	+				-2.2
4,504,932	-				-0.2
4,504,932	-				+0.5
4,505,132	+		Pf6N2E2_3874	0.28	+0.9
4,505,132	+		Pf6N2E2_3874	0.28	-1.1
4,505,132	+		Pf6N2E2_3874	0.28	-1.5
4,505,132	+		Pf6N2E2_3874	0.28	-0.7
4,505,133	-		Pf6N2E2_3874	0.29	-1.1
4,505,133	-		Pf6N2E2_3874	0.29	-0.7
4,505,147	+		Pf6N2E2_3874	0.31	-1.8
4,505,147	+		Pf6N2E2_3874	0.31	-0.1
4,505,148	-		Pf6N2E2_3874	0.31	+0.3
4,505,264	-		Pf6N2E2_3874	0.48	+0.5
4,505,264	-		Pf6N2E2_3874	0.48	-1.3
4,505,264	-		Pf6N2E2_3874	0.48	-0.4
4,505,392	+		Pf6N2E2_3874	0.67	-1.0
4,505,392	+		Pf6N2E2_3874	0.67	+0.3
4,505,392	+		Pf6N2E2_3874	0.67	-0.9
4,505,393	-		Pf6N2E2_3874	0.67	-0.4
4,505,452	+		Pf6N2E2_3874	0.76	+1.5
4,505,453	-		Pf6N2E2_3874	0.76	-0.4
4,505,529	+		Pf6N2E2_3874	0.88	+0.1
4,505,529	+		Pf6N2E2_3874	0.88	-0.5
4,505,529	+		Pf6N2E2_3874	0.88	-0.5
4,505,529	+		Pf6N2E2_3874	0.88	-3.2
4,505,529	+		Pf6N2E2_3874	0.88	-1.6
4,505,530	-		Pf6N2E2_3874	0.88	-3.8
4,505,530	-		Pf6N2E2_3874	0.88	-0.1
4,505,530	-		Pf6N2E2_3874	0.88	+0.6
4,505,530	-		Pf6N2E2_3874	0.88	+0.5
4,505,590	+				-0.1
4,505,590	+				-0.9
4,505,590	+				+0.5
4,505,591	-				+0.1
4,505,591	-				-1.0
4,505,591	-				-0.9
4,505,591	-				-2.2
4,505,591	-				-0.8
4,505,591	-				+1.5
4,505,594	+				-1.3
4,505,594	+				-0.9
4,505,594	+				+1.2
4,505,594	+				-1.4
4,505,594	+				-0.7
4,505,594	+				+0.7
4,505,594	+				+0.1
4,505,594	+				-2.8
4,505,595	-				+0.2
4,505,595	-				-1.1
4,505,595	-				+0.2
4,505,595	-				+0.2
4,505,595	-				+1.5
4,505,595	-				+1.0
4,505,595	-				-1.3
4,505,595	-				+0.5
4,505,596	+				-1.4
4,505,596	+				-0.5
4,505,596	+				-0.9
4,505,596	+				-0.4
4,505,596	+				+0.1
4,505,596	+				-0.2
4,505,597	-				+0.0
4,505,597	-				+1.5
4,505,597	-				-0.5
4,505,597	-				+0.5
4,505,597	-				-0.5
4,505,597	-				-0.7
4,505,597	-				-0.5
4,505,597	-				-0.4
4,505,597	-				+0.5
4,505,652	+				-1.9
4,505,653	-				-0.6
4,505,745	+				-1.5
4,505,746	-				+1.4
4,505,746	-				-0.2
4,505,758	+				+0.5
4,505,758	+				-1.0
4,505,767	+				-0.3
4,505,768	-				-1.6
4,505,838	+				+0.3
4,505,838	+				-0.9
4,505,838	+				+1.5
4,505,839	-				-0.9
4,505,839	-				-0.5
4,505,856	+				-0.7
4,505,856	+				-1.1
4,505,856	+				+0.2
4,505,857	-				-1.1
4,505,857	-				+1.2
4,505,931	-		Pf6N2E2_3875	0.38	-0.4
4,505,931	-		Pf6N2E2_3875	0.38	+0.8
4,506,044	+				-0.3
4,506,044	+				-0.5
4,506,045	-				-2.7
4,506,045	-				-0.1
4,506,049	+				+1.5
4,506,049	+				+0.5
4,506,049	+				-0.9
4,506,049	+				-3.2
4,506,050	-				+0.2
4,506,050	-				+0.3
4,506,091	+				-0.4
4,506,092	-				-0.4
4,506,102	+				+0.3
4,506,103	-				+0.5
4,506,143	+				+0.5
4,506,143	+				-3.4
4,506,143	+				-0.7
4,506,144	-				-0.5
4,506,149	+				-1.8
4,506,149	+				+0.7
4,506,149	+				-0.4
4,506,149	+				+0.3
4,506,149	+				+0.7
4,506,150	-				-1.7
4,506,158	+				+0.1
4,506,255	+				+1.5
4,506,255	+				+0.3
4,506,256	-				-2.6
4,506,256	-				-1.3
4,506,256	-				-0.8
4,506,287	+				-0.5
4,506,287	+				-0.1
4,506,287	+				-0.8
4,506,288	-				-0.6
4,506,288	-				+1.5
4,506,331	-				-0.5
4,506,494	+		Pf6N2E2_3876	0.18	-1.1
4,506,495	-		Pf6N2E2_3876	0.18	+1.5
4,506,495	-		Pf6N2E2_3876	0.18	+1.5
4,506,495	-		Pf6N2E2_3876	0.18	+0.5
4,506,495	-		Pf6N2E2_3876	0.18	-1.3
4,506,495	-		Pf6N2E2_3876	0.18	+1.5
4,506,578	+		Pf6N2E2_3876	0.25	+1.5