Experiment: DAC16_cps7_1MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0093 and BT0094 overlap by 4 nucleotides BT0094 and BT0095 are separated by 11 nucleotides BT0095 and BT0096 are separated by 164 nucleotides BT0096 and BT0097 are separated by 1 nucleotides
BT0093: BT0093 - conserved protein found in conjugate transposon (NCBI ptt file), at 85,435 to 87,939
BT0093
BT0094: BT0094 - conserved protein found in conjugate transposon (NCBI ptt file), at 87,936 to 88,262
BT0094
BT0095: BT0095 - conserved protein found in conjugate transposon (NCBI ptt file), at 88,274 to 88,570
BT0095
BT0096: BT0096 - hypothetical protein (NCBI ptt file), at 88,735 to 89,415
BT0096
BT0097: BT0097 - conserved protein found in conjugate transposon (NCBI ptt file), at 89,417 to 89,854
BT0097
Position (kb) 88
89 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 87.288 kb on + strand, within BT0093 at 87.328 kb on - strand, within BT0093 at 87.343 kb on - strand, within BT0093 at 87.435 kb on + strand, within BT0093 at 87.457 kb on - strand, within BT0093 at 87.619 kb on + strand, within BT0093 at 87.698 kb on + strand at 87.699 kb on - strand at 87.781 kb on + strand at 87.919 kb on - strand at 87.926 kb on - strand at 87.930 kb on + strand at 88.138 kb on + strand, within BT0094 at 88.292 kb on + strand at 88.292 kb on + strand at 88.321 kb on + strand, within BT0095 at 88.351 kb on + strand, within BT0095 at 88.477 kb on + strand, within BT0095 at 88.478 kb on - strand, within BT0095 at 88.504 kb on + strand, within BT0095 at 88.578 kb on - strand at 88.716 kb on + strand at 88.716 kb on + strand at 89.381 kb on + strand at 89.505 kb on + strand, within BT0097
Per-strain Table
Position Strand Gene LocusTag Fraction DAC16_cps7_1MOI remove 87,288 + BT0093 0.74 -1.0 87,328 - BT0093 0.76 -2.6 87,343 - BT0093 0.76 -0.9 87,435 + BT0093 0.80 -2.0 87,457 - BT0093 0.81 +0.2 87,619 + BT0093 0.87 +0.5 87,698 + -3.6 87,699 - -0.6 87,781 + -0.6 87,919 - -2.4 87,926 - +0.7 87,930 + -0.2 88,138 + BT0094 0.62 -3.2 88,292 + -2.0 88,292 + -2.4 88,321 + BT0095 0.16 -0.6 88,351 + BT0095 0.26 -0.6 88,477 + BT0095 0.68 -3.0 88,478 - BT0095 0.69 -1.6 88,504 + BT0095 0.77 -3.4 88,578 - -2.6 88,716 + -0.1 88,716 + +1.0 89,381 + -1.7 89,505 + BT0097 0.20 -0.5
Or see this region's nucleotide sequence