Experiment: nitrogen source nitrite 5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_835 and Pf6N2E2_836 are separated by 231 nucleotides Pf6N2E2_836 and Pf6N2E2_837 are separated by 7 nucleotides
Pf6N2E2_835 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 976,137 to 977,429
_835
Pf6N2E2_836 - ABC-type protease/lipase transport system, ATPase and permease components, at 977,661 to 979,376
_836
Pf6N2E2_837 - HlyD family secretion protein, at 979,384 to 980,706
_837
Position (kb) 977
978
979
980 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 976.733 kb on + strand, within Pf6N2E2_835 at 976.733 kb on + strand, within Pf6N2E2_835 at 976.733 kb on + strand, within Pf6N2E2_835 at 976.733 kb on + strand, within Pf6N2E2_835 at 976.733 kb on + strand, within Pf6N2E2_835 at 976.734 kb on - strand, within Pf6N2E2_835 at 976.734 kb on - strand, within Pf6N2E2_835 at 977.078 kb on + strand, within Pf6N2E2_835 at 977.079 kb on - strand, within Pf6N2E2_835 at 977.171 kb on + strand, within Pf6N2E2_835 at 977.171 kb on + strand, within Pf6N2E2_835 at 977.171 kb on + strand, within Pf6N2E2_835 at 977.172 kb on - strand, within Pf6N2E2_835 at 977.181 kb on - strand, within Pf6N2E2_835 at 977.477 kb on + strand at 977.542 kb on + strand at 977.542 kb on + strand at 977.542 kb on + strand at 977.587 kb on - strand at 977.714 kb on + strand at 977.778 kb on + strand at 977.778 kb on + strand at 977.779 kb on - strand at 977.779 kb on - strand at 977.779 kb on - strand at 977.779 kb on - strand at 977.794 kb on - strand at 977.982 kb on - strand, within Pf6N2E2_836 at 977.982 kb on - strand, within Pf6N2E2_836 at 978.126 kb on + strand, within Pf6N2E2_836 at 978.127 kb on - strand, within Pf6N2E2_836 at 978.442 kb on - strand, within Pf6N2E2_836 at 978.442 kb on - strand, within Pf6N2E2_836 at 978.442 kb on - strand, within Pf6N2E2_836 at 978.571 kb on - strand, within Pf6N2E2_836 at 978.571 kb on - strand, within Pf6N2E2_836 at 978.823 kb on + strand, within Pf6N2E2_836 at 978.876 kb on + strand, within Pf6N2E2_836 at 978.877 kb on - strand, within Pf6N2E2_836 at 979.026 kb on + strand, within Pf6N2E2_836 at 979.104 kb on + strand, within Pf6N2E2_836 at 979.104 kb on + strand, within Pf6N2E2_836 at 979.375 kb on - strand at 979.966 kb on + strand, within Pf6N2E2_837 at 979.967 kb on - strand, within Pf6N2E2_837 at 979.967 kb on - strand, within Pf6N2E2_837 at 979.979 kb on + strand, within Pf6N2E2_837 at 980.012 kb on - strand, within Pf6N2E2_837 at 980.012 kb on - strand, within Pf6N2E2_837 at 980.072 kb on + strand, within Pf6N2E2_837 at 980.203 kb on + strand, within Pf6N2E2_837 at 980.203 kb on + strand, within Pf6N2E2_837 at 980.203 kb on + strand, within Pf6N2E2_837 at 980.203 kb on + strand, within Pf6N2E2_837 at 980.203 kb on + strand, within Pf6N2E2_837 at 980.204 kb on - strand, within Pf6N2E2_837 at 980.204 kb on - strand, within Pf6N2E2_837 at 980.257 kb on - strand, within Pf6N2E2_837
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 5mM remove 976,733 + Pf6N2E2_835 0.46 -1.3 976,733 + Pf6N2E2_835 0.46 -1.8 976,733 + Pf6N2E2_835 0.46 +1.6 976,733 + Pf6N2E2_835 0.46 -0.8 976,733 + Pf6N2E2_835 0.46 -1.2 976,734 - Pf6N2E2_835 0.46 +0.5 976,734 - Pf6N2E2_835 0.46 -0.1 977,078 + Pf6N2E2_835 0.73 -0.4 977,079 - Pf6N2E2_835 0.73 -1.6 977,171 + Pf6N2E2_835 0.80 +0.7 977,171 + Pf6N2E2_835 0.80 +0.3 977,171 + Pf6N2E2_835 0.80 +1.3 977,172 - Pf6N2E2_835 0.80 -0.5 977,181 - Pf6N2E2_835 0.81 +0.4 977,477 + -0.4 977,542 + -1.0 977,542 + -0.8 977,542 + -1.0 977,587 - -0.6 977,714 + +0.6 977,778 + +1.6 977,778 + +1.6 977,779 - -3.0 977,779 - -1.5 977,779 - +0.4 977,779 - +1.6 977,794 - +1.6 977,982 - Pf6N2E2_836 0.19 -1.6 977,982 - Pf6N2E2_836 0.19 +0.6 978,126 + Pf6N2E2_836 0.27 -0.0 978,127 - Pf6N2E2_836 0.27 +0.6 978,442 - Pf6N2E2_836 0.46 +1.2 978,442 - Pf6N2E2_836 0.46 -0.1 978,442 - Pf6N2E2_836 0.46 +1.6 978,571 - Pf6N2E2_836 0.53 -0.2 978,571 - Pf6N2E2_836 0.53 +0.3 978,823 + Pf6N2E2_836 0.68 +1.1 978,876 + Pf6N2E2_836 0.71 +0.6 978,877 - Pf6N2E2_836 0.71 +1.2 979,026 + Pf6N2E2_836 0.80 -0.4 979,104 + Pf6N2E2_836 0.84 -0.9 979,104 + Pf6N2E2_836 0.84 +2.0 979,375 - -0.9 979,966 + Pf6N2E2_837 0.44 +0.2 979,967 - Pf6N2E2_837 0.44 -0.8 979,967 - Pf6N2E2_837 0.44 +0.9 979,979 + Pf6N2E2_837 0.45 +0.2 980,012 - Pf6N2E2_837 0.47 -0.0 980,012 - Pf6N2E2_837 0.47 -0.2 980,072 + Pf6N2E2_837 0.52 -2.0 980,203 + Pf6N2E2_837 0.62 +0.0 980,203 + Pf6N2E2_837 0.62 -0.8 980,203 + Pf6N2E2_837 0.62 -0.4 980,203 + Pf6N2E2_837 0.62 +0.3 980,203 + Pf6N2E2_837 0.62 +1.6 980,204 - Pf6N2E2_837 0.62 +3.2 980,204 - Pf6N2E2_837 0.62 -0.4 980,257 - Pf6N2E2_837 0.66 -0.1
Or see this region's nucleotide sequence