Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_821

Experiment: nitrogen source nitrite 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_820 and Pf6N2E2_821 overlap by 4 nucleotidesPf6N2E2_821 and Pf6N2E2_822 are separated by 341 nucleotides Pf6N2E2_820 - Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-), at 953,693 to 955,363 _820 Pf6N2E2_821 - KaiC, at 955,360 to 956,862 _821 Pf6N2E2_822 - TPR domain protein, at 957,204 to 958,262 _822 Position (kb) 955 956 957Strain fitness (log2 ratio) -2 -1 0 1 2at 954.847 kb on + strand, within Pf6N2E2_820at 954.958 kb on - strand, within Pf6N2E2_820at 955.401 kb on + strandat 955.401 kb on + strandat 955.401 kb on + strandat 955.402 kb on - strandat 955.402 kb on - strandat 955.403 kb on + strandat 955.403 kb on + strandat 955.403 kb on + strandat 955.403 kb on + strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.482 kb on - strandat 955.595 kb on + strand, within Pf6N2E2_821at 955.595 kb on + strand, within Pf6N2E2_821at 955.595 kb on + strand, within Pf6N2E2_821at 955.595 kb on + strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.599 kb on + strand, within Pf6N2E2_821at 955.599 kb on + strand, within Pf6N2E2_821at 955.599 kb on + strand, within Pf6N2E2_821at 955.600 kb on - strand, within Pf6N2E2_821at 955.600 kb on - strand, within Pf6N2E2_821at 955.682 kb on + strand, within Pf6N2E2_821at 955.683 kb on - strand, within Pf6N2E2_821at 955.742 kb on + strand, within Pf6N2E2_821at 955.973 kb on - strand, within Pf6N2E2_821at 955.973 kb on - strand, within Pf6N2E2_821at 956.117 kb on + strand, within Pf6N2E2_821at 956.117 kb on + strand, within Pf6N2E2_821at 956.118 kb on - strand, within Pf6N2E2_821at 956.161 kb on + strand, within Pf6N2E2_821at 956.204 kb on + strand, within Pf6N2E2_821at 956.219 kb on + strand, within Pf6N2E2_821at 956.255 kb on + strand, within Pf6N2E2_821at 956.256 kb on - strand, within Pf6N2E2_821at 956.256 kb on - strand, within Pf6N2E2_821at 956.256 kb on - strand, within Pf6N2E2_821at 956.375 kb on + strand, within Pf6N2E2_821at 956.375 kb on + strand, within Pf6N2E2_821at 956.375 kb on + strand, within Pf6N2E2_821at 956.375 kb on + strand, within Pf6N2E2_821at 956.376 kb on - strand, within Pf6N2E2_821at 956.534 kb on + strand, within Pf6N2E2_821at 956.595 kb on + strand, within Pf6N2E2_821at 956.596 kb on - strand, within Pf6N2E2_821at 956.675 kb on + strand, within Pf6N2E2_821at 956.675 kb on + strand, within Pf6N2E2_821at 956.676 kb on - strand, within Pf6N2E2_821at 956.676 kb on - strand, within Pf6N2E2_821at 956.850 kb on + strandat 956.851 kb on - strandat 956.856 kb on + strandat 956.866 kb on + strandat 956.963 kb on + strandat 956.963 kb on + strandat 956.963 kb on + strandat 956.972 kb on - strandat 956.983 kb on + strandat 956.983 kb on + strandat 956.984 kb on - strandat 956.984 kb on - strandat 957.016 kb on - strandat 957.036 kb on + strandat 957.199 kb on + strandat 957.199 kb on + strandat 957.206 kb on - strandat 957.301 kb on + strandat 957.301 kb on + strandat 957.301 kb on + strandat 957.302 kb on - strandat 957.302 kb on - strandat 957.419 kb on - strand, within Pf6N2E2_822at 957.478 kb on + strand, within Pf6N2E2_822at 957.478 kb on + strand, within Pf6N2E2_822at 957.479 kb on - strand, within Pf6N2E2_822at 957.530 kb on - strand, within Pf6N2E2_822at 957.570 kb on + strand, within Pf6N2E2_822at 957.606 kb on + strand, within Pf6N2E2_822at 957.606 kb on + strand, within Pf6N2E2_822at 957.607 kb on - strand, within Pf6N2E2_822

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 5mM
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954,847 + Pf6N2E2_820 0.69 -0.4
954,958 - Pf6N2E2_820 0.76 -0.8
955,401 + -0.4
955,401 + -0.5
955,401 + +0.6
955,402 - +1.6
955,402 - +1.6
955,403 + -1.2
955,403 + -1.2
955,403 + +0.2
955,403 + +0.6
955,404 - -0.6
955,404 - +1.6
955,404 - +0.5
955,404 - -0.7
955,404 - +0.2
955,404 - +1.6
955,404 - -0.3
955,404 - -0.1
955,404 - +0.9
955,404 - -2.1
955,404 - -2.6
955,404 - -1.6
955,404 - +0.6
955,482 - +0.6
955,595 + Pf6N2E2_821 0.16 +1.1
955,595 + Pf6N2E2_821 0.16 -2.1
955,595 + Pf6N2E2_821 0.16 -1.0
955,595 + Pf6N2E2_821 0.16 -2.5
955,596 - Pf6N2E2_821 0.16 +1.6
955,596 - Pf6N2E2_821 0.16 +1.6
955,596 - Pf6N2E2_821 0.16 -1.3
955,596 - Pf6N2E2_821 0.16 +0.6
955,596 - Pf6N2E2_821 0.16 -0.4
955,596 - Pf6N2E2_821 0.16 +1.6
955,596 - Pf6N2E2_821 0.16 -0.3
955,596 - Pf6N2E2_821 0.16 -0.0
955,596 - Pf6N2E2_821 0.16 +1.6
955,599 + Pf6N2E2_821 0.16 +1.1
955,599 + Pf6N2E2_821 0.16 -1.2
955,599 + Pf6N2E2_821 0.16 -1.0
955,600 - Pf6N2E2_821 0.16 -0.2
955,600 - Pf6N2E2_821 0.16 +0.3
955,682 + Pf6N2E2_821 0.21 +1.6
955,683 - Pf6N2E2_821 0.21 +0.1
955,742 + Pf6N2E2_821 0.25 +1.2
955,973 - Pf6N2E2_821 0.41 +0.4
955,973 - Pf6N2E2_821 0.41 +0.0
956,117 + Pf6N2E2_821 0.50 -0.8
956,117 + Pf6N2E2_821 0.50 +0.1
956,118 - Pf6N2E2_821 0.50 -0.5
956,161 + Pf6N2E2_821 0.53 +0.3
956,204 + Pf6N2E2_821 0.56 +0.3
956,219 + Pf6N2E2_821 0.57 -0.4
956,255 + Pf6N2E2_821 0.60 +0.4
956,256 - Pf6N2E2_821 0.60 +0.8
956,256 - Pf6N2E2_821 0.60 +0.2
956,256 - Pf6N2E2_821 0.60 +1.6
956,375 + Pf6N2E2_821 0.68 +1.3
956,375 + Pf6N2E2_821 0.68 -0.0
956,375 + Pf6N2E2_821 0.68 +0.8
956,375 + Pf6N2E2_821 0.68 -1.4
956,376 - Pf6N2E2_821 0.68 -0.0
956,534 + Pf6N2E2_821 0.78 -0.3
956,595 + Pf6N2E2_821 0.82 -0.2
956,596 - Pf6N2E2_821 0.82 -0.8
956,675 + Pf6N2E2_821 0.87 +0.8
956,675 + Pf6N2E2_821 0.87 +0.6
956,676 - Pf6N2E2_821 0.88 +1.6
956,676 - Pf6N2E2_821 0.88 -0.2
956,850 + -0.1
956,851 - -1.6
956,856 + +0.3
956,866 + -0.6
956,963 + +0.0
956,963 + +1.0
956,963 + -0.7
956,972 - +0.6
956,983 + -0.2
956,983 + +2.6
956,984 - -0.0
956,984 - +0.3
957,016 - +1.6
957,036 + -0.2
957,199 + +0.6
957,199 + +0.2
957,206 - -1.1
957,301 + +0.1
957,301 + +0.8
957,301 + +0.2
957,302 - +0.6
957,302 - +0.8
957,419 - Pf6N2E2_822 0.20 -0.4
957,478 + Pf6N2E2_822 0.26 +1.2
957,478 + Pf6N2E2_822 0.26 -0.0
957,479 - Pf6N2E2_822 0.26 +0.0
957,530 - Pf6N2E2_822 0.31 -0.5
957,570 + Pf6N2E2_822 0.35 -0.8
957,606 + Pf6N2E2_822 0.38 +1.6
957,606 + Pf6N2E2_822 0.38 -1.9
957,607 - Pf6N2E2_822 0.38 -0.4

Or see this region's nucleotide sequence