Experiment: nitrogen source nitrite 5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5308 and Pf6N2E2_5309 are separated by 136 nucleotides Pf6N2E2_5309 and Pf6N2E2_5310 are separated by 180 nucleotides
Pf6N2E2_5308 - Transcriptional regulator, AraC family, at 6,102,281 to 6,103,156
_5308
Pf6N2E2_5309 - Permease of the drug/metabolite transporter (DMT) superfamily, at 6,103,293 to 6,104,195
_5309
Pf6N2E2_5310 - Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-), at 6,104,376 to 6,105,347
_5310
Position (kb)
6103
6104
6105 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 6102.303 kb on + strand at 6102.453 kb on + strand, within Pf6N2E2_5308 at 6102.453 kb on + strand, within Pf6N2E2_5308 at 6102.453 kb on + strand, within Pf6N2E2_5308 at 6102.453 kb on + strand, within Pf6N2E2_5308 at 6102.453 kb on + strand, within Pf6N2E2_5308 at 6102.453 kb on + strand, within Pf6N2E2_5308 at 6102.453 kb on + strand, within Pf6N2E2_5308 at 6102.453 kb on + strand, within Pf6N2E2_5308 at 6102.453 kb on + strand, within Pf6N2E2_5308 at 6102.453 kb on + strand, within Pf6N2E2_5308 at 6102.453 kb on + strand, within Pf6N2E2_5308 at 6102.453 kb on + strand, within Pf6N2E2_5308 at 6102.453 kb on + strand, within Pf6N2E2_5308 at 6102.453 kb on + strand, within Pf6N2E2_5308 at 6102.453 kb on + strand, within Pf6N2E2_5308 at 6102.454 kb on - strand, within Pf6N2E2_5308 at 6102.454 kb on - strand, within Pf6N2E2_5308 at 6102.454 kb on - strand, within Pf6N2E2_5308 at 6102.454 kb on - strand, within Pf6N2E2_5308 at 6102.454 kb on - strand, within Pf6N2E2_5308 at 6102.454 kb on - strand, within Pf6N2E2_5308 at 6102.454 kb on - strand, within Pf6N2E2_5308 at 6102.454 kb on - strand, within Pf6N2E2_5308 at 6102.454 kb on - strand, within Pf6N2E2_5308 at 6102.454 kb on - strand, within Pf6N2E2_5308 at 6102.454 kb on - strand, within Pf6N2E2_5308 at 6102.454 kb on - strand, within Pf6N2E2_5308 at 6102.454 kb on - strand, within Pf6N2E2_5308 at 6102.454 kb on - strand, within Pf6N2E2_5308 at 6102.504 kb on + strand, within Pf6N2E2_5308 at 6102.573 kb on + strand, within Pf6N2E2_5308 at 6102.573 kb on + strand, within Pf6N2E2_5308 at 6102.573 kb on + strand, within Pf6N2E2_5308 at 6102.574 kb on - strand, within Pf6N2E2_5308 at 6102.815 kb on + strand, within Pf6N2E2_5308 at 6102.815 kb on + strand, within Pf6N2E2_5308 at 6102.855 kb on + strand, within Pf6N2E2_5308 at 6102.855 kb on + strand, within Pf6N2E2_5308 at 6102.855 kb on + strand, within Pf6N2E2_5308 at 6102.856 kb on - strand, within Pf6N2E2_5308 at 6102.856 kb on - strand, within Pf6N2E2_5308 at 6102.856 kb on - strand, within Pf6N2E2_5308 at 6102.856 kb on - strand, within Pf6N2E2_5308 at 6102.856 kb on - strand, within Pf6N2E2_5308 at 6102.971 kb on - strand, within Pf6N2E2_5308 at 6102.990 kb on + strand, within Pf6N2E2_5308 at 6102.990 kb on + strand, within Pf6N2E2_5308 at 6102.990 kb on + strand, within Pf6N2E2_5308 at 6102.990 kb on + strand, within Pf6N2E2_5308 at 6102.990 kb on + strand, within Pf6N2E2_5308 at 6103.003 kb on + strand, within Pf6N2E2_5308 at 6103.003 kb on + strand, within Pf6N2E2_5308 at 6103.004 kb on - strand, within Pf6N2E2_5308 at 6103.004 kb on - strand, within Pf6N2E2_5308 at 6103.004 kb on - strand, within Pf6N2E2_5308 at 6103.023 kb on + strand, within Pf6N2E2_5308 at 6103.136 kb on + strand at 6103.136 kb on + strand at 6103.182 kb on + strand at 6103.182 kb on + strand at 6103.182 kb on + strand at 6103.183 kb on - strand at 6103.183 kb on - strand at 6103.183 kb on - strand at 6103.183 kb on - strand at 6103.183 kb on - strand at 6103.183 kb on - strand at 6103.234 kb on - strand at 6103.308 kb on + strand at 6103.308 kb on + strand at 6103.308 kb on + strand at 6103.308 kb on + strand at 6103.308 kb on + strand at 6103.309 kb on - strand at 6103.309 kb on - strand at 6103.317 kb on - strand at 6103.518 kb on - strand, within Pf6N2E2_5309 at 6103.518 kb on - strand, within Pf6N2E2_5309 at 6103.854 kb on + strand, within Pf6N2E2_5309 at 6103.855 kb on - strand, within Pf6N2E2_5309 at 6103.927 kb on - strand, within Pf6N2E2_5309 at 6103.944 kb on + strand, within Pf6N2E2_5309 at 6103.944 kb on + strand, within Pf6N2E2_5309 at 6103.944 kb on + strand, within Pf6N2E2_5309 at 6103.945 kb on - strand, within Pf6N2E2_5309 at 6104.025 kb on + strand, within Pf6N2E2_5309 at 6104.290 kb on + strand at 6104.291 kb on - strand at 6104.291 kb on - strand at 6104.377 kb on + strand at 6104.377 kb on + strand at 6104.377 kb on + strand at 6104.377 kb on + strand at 6104.378 kb on - strand at 6104.378 kb on - strand at 6104.378 kb on - strand at 6104.560 kb on + strand, within Pf6N2E2_5310 at 6104.560 kb on + strand, within Pf6N2E2_5310 at 6104.560 kb on + strand, within Pf6N2E2_5310 at 6104.561 kb on - strand, within Pf6N2E2_5310 at 6104.561 kb on - strand, within Pf6N2E2_5310 at 6104.827 kb on + strand, within Pf6N2E2_5310 at 6104.827 kb on + strand, within Pf6N2E2_5310 at 6104.919 kb on + strand, within Pf6N2E2_5310 at 6104.919 kb on + strand, within Pf6N2E2_5310 at 6104.919 kb on + strand, within Pf6N2E2_5310 at 6104.919 kb on + strand, within Pf6N2E2_5310 at 6104.920 kb on - strand, within Pf6N2E2_5310 at 6104.920 kb on - strand, within Pf6N2E2_5310 at 6104.920 kb on - strand, within Pf6N2E2_5310 at 6104.920 kb on - strand, within Pf6N2E2_5310 at 6104.920 kb on - strand, within Pf6N2E2_5310 at 6104.920 kb on - strand, within Pf6N2E2_5310 at 6105.054 kb on + strand, within Pf6N2E2_5310 at 6105.054 kb on + strand, within Pf6N2E2_5310 at 6105.055 kb on - strand, within Pf6N2E2_5310 at 6105.055 kb on - strand, within Pf6N2E2_5310 at 6105.055 kb on - strand, within Pf6N2E2_5310 at 6105.055 kb on - strand, within Pf6N2E2_5310 at 6105.055 kb on - strand, within Pf6N2E2_5310 at 6105.097 kb on + strand, within Pf6N2E2_5310 at 6105.097 kb on + strand, within Pf6N2E2_5310 at 6105.109 kb on + strand, within Pf6N2E2_5310 at 6105.109 kb on + strand, within Pf6N2E2_5310 at 6105.109 kb on + strand, within Pf6N2E2_5310 at 6105.109 kb on + strand, within Pf6N2E2_5310 at 6105.109 kb on + strand, within Pf6N2E2_5310 at 6105.109 kb on + strand, within Pf6N2E2_5310 at 6105.109 kb on + strand, within Pf6N2E2_5310 at 6105.109 kb on + strand, within Pf6N2E2_5310 at 6105.109 kb on + strand, within Pf6N2E2_5310 at 6105.109 kb on + strand, within Pf6N2E2_5310 at 6105.110 kb on - strand, within Pf6N2E2_5310 at 6105.110 kb on - strand, within Pf6N2E2_5310 at 6105.110 kb on - strand, within Pf6N2E2_5310 at 6105.110 kb on - strand, within Pf6N2E2_5310 at 6105.110 kb on - strand, within Pf6N2E2_5310 at 6105.110 kb on - strand, within Pf6N2E2_5310 at 6105.110 kb on - strand, within Pf6N2E2_5310
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 5mM remove 6,102,303 + -2.0 6,102,453 + Pf6N2E2_5308 0.20 +0.2 6,102,453 + Pf6N2E2_5308 0.20 +0.2 6,102,453 + Pf6N2E2_5308 0.20 -1.9 6,102,453 + Pf6N2E2_5308 0.20 -2.7 6,102,453 + Pf6N2E2_5308 0.20 -2.0 6,102,453 + Pf6N2E2_5308 0.20 -3.7 6,102,453 + Pf6N2E2_5308 0.20 -3.3 6,102,453 + Pf6N2E2_5308 0.20 -3.4 6,102,453 + Pf6N2E2_5308 0.20 -1.7 6,102,453 + Pf6N2E2_5308 0.20 +1.8 6,102,453 + Pf6N2E2_5308 0.20 -2.5 6,102,453 + Pf6N2E2_5308 0.20 -1.9 6,102,453 + Pf6N2E2_5308 0.20 -3.3 6,102,453 + Pf6N2E2_5308 0.20 -3.8 6,102,453 + Pf6N2E2_5308 0.20 -0.4 6,102,454 - Pf6N2E2_5308 0.20 -0.4 6,102,454 - Pf6N2E2_5308 0.20 -4.0 6,102,454 - Pf6N2E2_5308 0.20 -1.3 6,102,454 - Pf6N2E2_5308 0.20 -3.1 6,102,454 - Pf6N2E2_5308 0.20 -2.6 6,102,454 - Pf6N2E2_5308 0.20 -2.0 6,102,454 - Pf6N2E2_5308 0.20 -5.4 6,102,454 - Pf6N2E2_5308 0.20 -4.2 6,102,454 - Pf6N2E2_5308 0.20 -4.0 6,102,454 - Pf6N2E2_5308 0.20 -3.6 6,102,454 - Pf6N2E2_5308 0.20 -2.1 6,102,454 - Pf6N2E2_5308 0.20 -0.2 6,102,454 - Pf6N2E2_5308 0.20 -4.2 6,102,454 - Pf6N2E2_5308 0.20 -2.6 6,102,504 + Pf6N2E2_5308 0.25 -5.0 6,102,573 + Pf6N2E2_5308 0.33 -1.2 6,102,573 + Pf6N2E2_5308 0.33 -2.6 6,102,573 + Pf6N2E2_5308 0.33 +0.2 6,102,574 - Pf6N2E2_5308 0.33 -3.7 6,102,815 + Pf6N2E2_5308 0.61 -0.2 6,102,815 + Pf6N2E2_5308 0.61 -1.8 6,102,855 + Pf6N2E2_5308 0.66 -0.6 6,102,855 + Pf6N2E2_5308 0.66 -3.2 6,102,855 + Pf6N2E2_5308 0.66 -3.3 6,102,856 - Pf6N2E2_5308 0.66 -2.9 6,102,856 - Pf6N2E2_5308 0.66 -2.4 6,102,856 - Pf6N2E2_5308 0.66 -1.1 6,102,856 - Pf6N2E2_5308 0.66 -1.8 6,102,856 - Pf6N2E2_5308 0.66 +0.2 6,102,971 - Pf6N2E2_5308 0.79 -1.4 6,102,990 + Pf6N2E2_5308 0.81 -3.8 6,102,990 + Pf6N2E2_5308 0.81 -2.9 6,102,990 + Pf6N2E2_5308 0.81 -1.2 6,102,990 + Pf6N2E2_5308 0.81 -3.9 6,102,990 + Pf6N2E2_5308 0.81 -2.8 6,103,003 + Pf6N2E2_5308 0.82 -3.0 6,103,003 + Pf6N2E2_5308 0.82 +0.2 6,103,004 - Pf6N2E2_5308 0.83 -2.6 6,103,004 - Pf6N2E2_5308 0.83 -1.2 6,103,004 - Pf6N2E2_5308 0.83 -3.8 6,103,023 + Pf6N2E2_5308 0.85 +0.8 6,103,136 + -1.0 6,103,136 + +0.8 6,103,182 + -0.7 6,103,182 + +1.1 6,103,182 + -1.0 6,103,183 - +0.5 6,103,183 - -0.8 6,103,183 - -0.8 6,103,183 - +0.0 6,103,183 - +1.0 6,103,183 - +0.6 6,103,234 - -3.8 6,103,308 + -3.7 6,103,308 + -3.2 6,103,308 + -1.7 6,103,308 + -2.3 6,103,308 + -4.0 6,103,309 - +0.2 6,103,309 - +1.8 6,103,317 - -1.6 6,103,518 - Pf6N2E2_5309 0.25 -2.9 6,103,518 - Pf6N2E2_5309 0.25 -3.4 6,103,854 + Pf6N2E2_5309 0.62 -3.6 6,103,855 - Pf6N2E2_5309 0.62 -2.9 6,103,927 - Pf6N2E2_5309 0.70 -3.0 6,103,944 + Pf6N2E2_5309 0.72 -5.4 6,103,944 + Pf6N2E2_5309 0.72 -5.2 6,103,944 + Pf6N2E2_5309 0.72 -3.8 6,103,945 - Pf6N2E2_5309 0.72 -4.9 6,104,025 + Pf6N2E2_5309 0.81 -4.2 6,104,290 + -0.0 6,104,291 - +0.2 6,104,291 - +1.1 6,104,377 + -0.9 6,104,377 + +0.2 6,104,377 + +1.8 6,104,377 + -0.1 6,104,378 - -0.6 6,104,378 - +1.2 6,104,378 - -0.4 6,104,560 + Pf6N2E2_5310 0.19 -0.6 6,104,560 + Pf6N2E2_5310 0.19 -1.2 6,104,560 + Pf6N2E2_5310 0.19 -1.6 6,104,561 - Pf6N2E2_5310 0.19 -1.7 6,104,561 - Pf6N2E2_5310 0.19 -2.1 6,104,827 + Pf6N2E2_5310 0.46 -0.7 6,104,827 + Pf6N2E2_5310 0.46 -0.2 6,104,919 + Pf6N2E2_5310 0.56 -0.4 6,104,919 + Pf6N2E2_5310 0.56 +0.8 6,104,919 + Pf6N2E2_5310 0.56 -1.2 6,104,919 + Pf6N2E2_5310 0.56 -0.1 6,104,920 - Pf6N2E2_5310 0.56 +0.5 6,104,920 - Pf6N2E2_5310 0.56 +0.6 6,104,920 - Pf6N2E2_5310 0.56 -0.6 6,104,920 - Pf6N2E2_5310 0.56 -2.1 6,104,920 - Pf6N2E2_5310 0.56 -0.3 6,104,920 - Pf6N2E2_5310 0.56 +0.2 6,105,054 + Pf6N2E2_5310 0.70 -0.7 6,105,054 + Pf6N2E2_5310 0.70 +0.2 6,105,055 - Pf6N2E2_5310 0.70 +0.7 6,105,055 - Pf6N2E2_5310 0.70 -1.9 6,105,055 - Pf6N2E2_5310 0.70 +0.2 6,105,055 - Pf6N2E2_5310 0.70 -0.7 6,105,055 - Pf6N2E2_5310 0.70 -0.6 6,105,097 + Pf6N2E2_5310 0.74 -0.2 6,105,097 + Pf6N2E2_5310 0.74 -1.6 6,105,109 + Pf6N2E2_5310 0.75 -0.7 6,105,109 + Pf6N2E2_5310 0.75 -0.5 6,105,109 + Pf6N2E2_5310 0.75 -1.0 6,105,109 + Pf6N2E2_5310 0.75 +0.3 6,105,109 + Pf6N2E2_5310 0.75 +0.5 6,105,109 + Pf6N2E2_5310 0.75 -1.0 6,105,109 + Pf6N2E2_5310 0.75 +0.3 6,105,109 + Pf6N2E2_5310 0.75 -1.1 6,105,109 + Pf6N2E2_5310 0.75 -0.6 6,105,109 + Pf6N2E2_5310 0.75 +0.8 6,105,110 - Pf6N2E2_5310 0.76 -0.2 6,105,110 - Pf6N2E2_5310 0.76 +0.6 6,105,110 - Pf6N2E2_5310 0.76 -1.2 6,105,110 - Pf6N2E2_5310 0.76 +1.8 6,105,110 - Pf6N2E2_5310 0.76 -1.4 6,105,110 - Pf6N2E2_5310 0.76 +0.6 6,105,110 - Pf6N2E2_5310 0.76 -3.5
Or see this region's nucleotide sequence