Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5170

Experiment: nitrogen source nitrite 5mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 5mM
5,956,387	+				-0.6
5,956,451	+				-0.1
5,956,452	-				-1.4
5,956,452	-				+0.8
5,956,452	-				-0.4
5,956,452	-				+1.4
5,956,452	-				+1.8
5,956,481	+		Pf6N2E2_5168	0.14	+0.5
5,956,482	-		Pf6N2E2_5168	0.14	-0.4
5,956,552	+		Pf6N2E2_5168	0.40	-0.6
5,956,552	+		Pf6N2E2_5168	0.40	-0.5
5,956,552	+		Pf6N2E2_5168	0.40	+1.6
5,956,553	-		Pf6N2E2_5168	0.40	+1.8
5,956,553	-		Pf6N2E2_5168	0.40	-0.2
5,956,627	-		Pf6N2E2_5168	0.67	-0.6
5,956,769	+				-1.5
5,956,770	-				-0.9
5,956,780	-				-0.2
5,956,780	-				+0.0
5,956,823	+				-0.4
5,956,823	+				+0.9
5,956,823	+				-0.6
5,956,823	+				+0.1
5,956,823	+				-1.4
5,956,824	-				-0.4
5,956,824	-				-0.4
5,956,824	-				-0.4
5,956,863	+				-0.6
5,956,863	+				-0.2
5,956,864	-				+0.8
5,956,864	-				-0.2
5,956,963	-				-0.0
5,957,028	+		Pf6N2E2_5169	0.23	+0.1
5,957,028	+		Pf6N2E2_5169	0.23	-2.2
5,957,029	-		Pf6N2E2_5169	0.23	+0.3
5,957,029	-		Pf6N2E2_5169	0.23	-0.2
5,957,029	-		Pf6N2E2_5169	0.23	+0.5
5,957,029	-		Pf6N2E2_5169	0.23	-1.0
5,957,029	-		Pf6N2E2_5169	0.23	-0.1
5,957,119	-		Pf6N2E2_5169	0.50	-0.7
5,957,256	+				-0.7
5,957,256	+				+0.1
5,957,257	-				-0.9
5,957,257	-				+0.9
5,957,295	+				-0.8
5,957,375	+				+0.6
5,957,375	+				+0.5
5,957,376	-				+0.5
5,957,376	-				+0.3
5,957,379	+				-1.0
5,957,379	+				+0.2
5,957,379	+				-0.6
5,957,379	+				+0.2
5,957,379	+				-0.1
5,957,673	+		Pf6N2E2_5170	0.19	-1.8
5,957,673	+		Pf6N2E2_5170	0.19	-0.6
5,957,673	+		Pf6N2E2_5170	0.19	-1.6
5,957,673	+		Pf6N2E2_5170	0.19	-2.8
5,957,673	+		Pf6N2E2_5170	0.19	-2.8
5,957,673	+		Pf6N2E2_5170	0.19	-3.4
5,957,673	+		Pf6N2E2_5170	0.19	-4.4
5,957,674	-		Pf6N2E2_5170	0.19	-2.1
5,957,674	-		Pf6N2E2_5170	0.19	+0.2
5,957,674	-		Pf6N2E2_5170	0.19	-3.1
5,957,742	+		Pf6N2E2_5170	0.23	-1.9
5,957,743	-		Pf6N2E2_5170	0.23	-2.1
5,957,743	-		Pf6N2E2_5170	0.23	-1.1
5,957,743	-		Pf6N2E2_5170	0.23	-1.3
5,957,767	+		Pf6N2E2_5170	0.25	-0.8
5,957,767	+		Pf6N2E2_5170	0.25	-1.4
5,957,767	+		Pf6N2E2_5170	0.25	-3.9
5,957,767	+		Pf6N2E2_5170	0.25	-0.9
5,957,768	-		Pf6N2E2_5170	0.25	-3.6
5,957,769	+		Pf6N2E2_5170	0.25	-1.3
5,957,769	+		Pf6N2E2_5170	0.25	-0.5
5,957,769	+		Pf6N2E2_5170	0.25	-2.2
5,957,770	-		Pf6N2E2_5170	0.25	-1.9
5,957,770	-		Pf6N2E2_5170	0.25	+1.8
5,957,864	+		Pf6N2E2_5170	0.31	-0.8
5,957,864	+		Pf6N2E2_5170	0.31	-1.9
5,957,946	+		Pf6N2E2_5170	0.36	-1.8
5,957,946	+		Pf6N2E2_5170	0.36	-1.3
5,957,967	+		Pf6N2E2_5170	0.38	-1.9
5,957,967	+		Pf6N2E2_5170	0.38	-0.2
5,957,967	+		Pf6N2E2_5170	0.38	-2.2
5,957,968	-		Pf6N2E2_5170	0.38	-3.5
5,958,063	+		Pf6N2E2_5170	0.44	-2.3
5,958,063	+		Pf6N2E2_5170	0.44	-1.5
5,958,063	+		Pf6N2E2_5170	0.44	-1.6
5,958,064	-		Pf6N2E2_5170	0.44	-2.2
5,958,064	-		Pf6N2E2_5170	0.44	-1.4
5,958,071	-		Pf6N2E2_5170	0.45	-2.7
5,958,071	-		Pf6N2E2_5170	0.45	-1.1
5,958,071	-		Pf6N2E2_5170	0.45	+1.8
5,958,072	+		Pf6N2E2_5170	0.45	-2.4
5,958,072	+		Pf6N2E2_5170	0.45	+1.8
5,958,072	+		Pf6N2E2_5170	0.45	-3.2
5,958,072	+		Pf6N2E2_5170	0.45	-2.5
5,958,072	+		Pf6N2E2_5170	0.45	-1.2
5,958,073	-		Pf6N2E2_5170	0.45	-1.4
5,958,073	-		Pf6N2E2_5170	0.45	-1.9
5,958,073	-				-0.7
5,958,073	-		Pf6N2E2_5170	0.45	-2.6
5,958,099	+		Pf6N2E2_5170	0.46	-2.7
5,958,099	+		Pf6N2E2_5170	0.46	-3.1
5,958,120	+		Pf6N2E2_5170	0.48	-2.3
5,958,120	+		Pf6N2E2_5170	0.48	-1.3
5,958,121	-		Pf6N2E2_5170	0.48	-1.2
5,958,198	+		Pf6N2E2_5170	0.53	-1.4
5,958,198	+		Pf6N2E2_5170	0.53	-0.8
5,958,198	+		Pf6N2E2_5170	0.53	-0.9
5,958,199	-		Pf6N2E2_5170	0.53	-0.6
5,958,630	+		Pf6N2E2_5170	0.80	-2.7
5,958,630	+		Pf6N2E2_5170	0.80	+0.8
5,958,630	+		Pf6N2E2_5170	0.80	+1.8
5,958,689	+		Pf6N2E2_5170	0.84	-2.5
5,958,689	+		Pf6N2E2_5170	0.84	+1.8
5,958,689	+		Pf6N2E2_5170	0.84	-1.7
5,958,689	+		Pf6N2E2_5170	0.84	-0.5
5,958,690	-		Pf6N2E2_5170	0.84	-1.0
5,958,702	+		Pf6N2E2_5170	0.85	-0.8
5,958,703	-		Pf6N2E2_5170	0.85	-1.0
5,958,703	-		Pf6N2E2_5170	0.85	-2.8
5,958,816	+				-2.5
5,958,816	+				+1.8
5,958,817	-				+0.2
5,958,817	-				-3.7
5,958,823	-				-1.5
5,958,823	-				-0.8
5,958,839	+				-0.9
5,958,948	+				-1.5
5,958,948	+				-0.5
5,958,948	+				-1.4
5,958,949	-				+1.1
5,958,949	-				-0.1
5,958,949	-				+0.2
5,958,975	-				+0.3
5,959,039	+				-0.2
5,959,041	+				-0.2
5,959,041	+				-1.9
5,959,041	+				-0.0
5,959,042	-				-0.7
5,959,130	+				-0.4
5,959,177	-				-1.5
5,959,239	+				-1.0
5,959,240	-				+0.3
5,959,240	-				+0.2
5,959,404	+		Pf6N2E2_5171	0.11	-1.2
5,959,405	-		Pf6N2E2_5171	0.11	+0.3
5,959,405	-		Pf6N2E2_5171	0.11	-1.7
5,959,405	-		Pf6N2E2_5171	0.11	-3.0
5,959,405	-		Pf6N2E2_5171	0.11	-2.0
5,959,455	+		Pf6N2E2_5171	0.14	-2.2
5,959,455	+		Pf6N2E2_5171	0.14	-0.4
5,959,629	+		Pf6N2E2_5171	0.21	-2.0
5,959,629	+		Pf6N2E2_5171	0.21	+0.2
5,959,629	+		Pf6N2E2_5171	0.21	-0.5
5,959,629	+		Pf6N2E2_5171	0.21	+0.2
5,959,629	+		Pf6N2E2_5171	0.21	-1.8
5,959,629	+		Pf6N2E2_5171	0.21	-0.3
5,959,629	+		Pf6N2E2_5171	0.21	-2.9
5,959,629	+		Pf6N2E2_5171	0.21	+0.8
5,959,630	-		Pf6N2E2_5171	0.21	-0.2
5,959,630	-		Pf6N2E2_5171	0.21	-0.5
5,959,682	+		Pf6N2E2_5171	0.24	-0.5
5,959,682	+		Pf6N2E2_5171	0.24	-0.9
5,959,683	-		Pf6N2E2_5171	0.24	+1.8
5,959,683	-		Pf6N2E2_5171	0.24	+0.8
5,959,683	-		Pf6N2E2_5171	0.24	+1.8
5,959,683	-		Pf6N2E2_5171	0.24	-1.2
5,959,683	-		Pf6N2E2_5171	0.24	+0.0
5,959,746	+		Pf6N2E2_5171	0.27	-0.5
5,959,746	+		Pf6N2E2_5171	0.27	-0.2
5,959,747	-		Pf6N2E2_5171	0.27	+1.8
5,959,747	-		Pf6N2E2_5171	0.27	+0.1
5,959,818	+		Pf6N2E2_5171	0.30	-1.6
5,959,845	+		Pf6N2E2_5171	0.31	+0.8
5,959,845	+		Pf6N2E2_5171	0.31	+0.1
5,959,846	-		Pf6N2E2_5171	0.31	-1.3
5,959,858	+		Pf6N2E2_5171	0.32	+0.1
5,959,858	+		Pf6N2E2_5171	0.32	-0.8
5,959,858	+		Pf6N2E2_5171	0.32	+0.1
5,959,858	+		Pf6N2E2_5171	0.32	-0.5
5,959,858	+		Pf6N2E2_5171	0.32	-1.8
5,959,858	+		Pf6N2E2_5171	0.32	-3.4
5,959,859	-		Pf6N2E2_5171	0.32	-0.8
5,959,859	-		Pf6N2E2_5171	0.32	-0.8
5,959,859	-		Pf6N2E2_5171	0.32	+0.2
5,959,859	-		Pf6N2E2_5171	0.32	+0.2
5,959,862	+		Pf6N2E2_5171	0.32	+1.8