Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2135

Experiment: nitrogen source nitrite 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2134 and Pf6N2E2_2135 are separated by 343 nucleotidesPf6N2E2_2135 and Pf6N2E2_2136 are separated by 101 nucleotides Pf6N2E2_2134 - putative lipoprotein, at 2,539,320 to 2,540,069 _2134 Pf6N2E2_2135 - Aldose 1-epimerase (EC 5.1.3.3), at 2,540,413 to 2,541,519 _2135 Pf6N2E2_2136 - Oxidoreductase, aldo/keto reductase family, at 2,541,621 to 2,542,442 _2136 Position (kb) 2540 2541 2542Strain fitness (log2 ratio) -2 -1 0 1 2at 2539.600 kb on + strand, within Pf6N2E2_2134at 2539.600 kb on + strand, within Pf6N2E2_2134at 2539.600 kb on + strand, within Pf6N2E2_2134at 2539.600 kb on + strand, within Pf6N2E2_2134at 2539.601 kb on - strand, within Pf6N2E2_2134at 2539.601 kb on - strand, within Pf6N2E2_2134at 2539.601 kb on - strand, within Pf6N2E2_2134at 2539.601 kb on - strand, within Pf6N2E2_2134at 2539.651 kb on + strand, within Pf6N2E2_2134at 2539.651 kb on + strand, within Pf6N2E2_2134at 2539.651 kb on + strand, within Pf6N2E2_2134at 2539.652 kb on - strand, within Pf6N2E2_2134at 2539.652 kb on - strand, within Pf6N2E2_2134at 2539.652 kb on - strand, within Pf6N2E2_2134at 2539.652 kb on - strand, within Pf6N2E2_2134at 2539.652 kb on - strand, within Pf6N2E2_2134at 2539.699 kb on + strand, within Pf6N2E2_2134at 2539.700 kb on - strand, within Pf6N2E2_2134at 2539.700 kb on - strand, within Pf6N2E2_2134at 2539.700 kb on - strand, within Pf6N2E2_2134at 2539.700 kb on - strand, within Pf6N2E2_2134at 2539.838 kb on - strand, within Pf6N2E2_2134at 2539.838 kb on - strand, within Pf6N2E2_2134at 2539.858 kb on + strand, within Pf6N2E2_2134at 2539.858 kb on + strand, within Pf6N2E2_2134at 2539.859 kb on - strand, within Pf6N2E2_2134at 2540.274 kb on + strandat 2540.364 kb on + strandat 2540.364 kb on + strandat 2540.364 kb on + strandat 2540.364 kb on + strandat 2540.365 kb on - strandat 2540.365 kb on - strandat 2540.391 kb on + strandat 2540.452 kb on - strandat 2540.548 kb on + strand, within Pf6N2E2_2135at 2540.549 kb on - strand, within Pf6N2E2_2135at 2540.558 kb on + strand, within Pf6N2E2_2135at 2540.558 kb on + strand, within Pf6N2E2_2135at 2540.558 kb on + strand, within Pf6N2E2_2135at 2540.559 kb on - strand, within Pf6N2E2_2135at 2540.787 kb on + strand, within Pf6N2E2_2135at 2540.905 kb on + strand, within Pf6N2E2_2135at 2540.905 kb on + strand, within Pf6N2E2_2135at 2540.906 kb on - strand, within Pf6N2E2_2135at 2540.906 kb on - strand, within Pf6N2E2_2135at 2540.942 kb on - strand, within Pf6N2E2_2135at 2540.942 kb on - strand, within Pf6N2E2_2135at 2540.992 kb on + strand, within Pf6N2E2_2135at 2540.993 kb on - strand, within Pf6N2E2_2135at 2541.061 kb on + strand, within Pf6N2E2_2135at 2541.061 kb on + strand, within Pf6N2E2_2135at 2541.062 kb on - strand, within Pf6N2E2_2135at 2541.062 kb on - strand, within Pf6N2E2_2135at 2541.117 kb on + strand, within Pf6N2E2_2135at 2541.159 kb on + strand, within Pf6N2E2_2135at 2541.271 kb on + strand, within Pf6N2E2_2135at 2541.272 kb on - strand, within Pf6N2E2_2135at 2541.272 kb on - strand, within Pf6N2E2_2135at 2541.272 kb on - strand, within Pf6N2E2_2135at 2541.272 kb on - strand, within Pf6N2E2_2135at 2541.304 kb on + strand, within Pf6N2E2_2135at 2541.304 kb on + strand, within Pf6N2E2_2135at 2541.304 kb on + strand, within Pf6N2E2_2135at 2541.305 kb on - strand, within Pf6N2E2_2135at 2541.305 kb on - strand, within Pf6N2E2_2135at 2541.305 kb on - strand, within Pf6N2E2_2135at 2541.332 kb on - strand, within Pf6N2E2_2135at 2541.332 kb on - strand, within Pf6N2E2_2135at 2541.332 kb on - strand, within Pf6N2E2_2135at 2541.382 kb on + strand, within Pf6N2E2_2135at 2541.481 kb on + strandat 2541.481 kb on + strandat 2541.481 kb on + strandat 2541.482 kb on - strandat 2541.482 kb on - strandat 2541.518 kb on - strandat 2541.518 kb on - strandat 2541.579 kb on + strandat 2541.579 kb on + strandat 2541.616 kb on + strandat 2541.616 kb on + strandat 2541.616 kb on + strandat 2541.617 kb on - strandat 2541.617 kb on - strandat 2541.617 kb on - strandat 2541.939 kb on + strand, within Pf6N2E2_2136at 2541.939 kb on + strand, within Pf6N2E2_2136at 2541.939 kb on + strand, within Pf6N2E2_2136at 2541.939 kb on + strand, within Pf6N2E2_2136at 2541.940 kb on - strand, within Pf6N2E2_2136at 2541.940 kb on - strand, within Pf6N2E2_2136at 2541.940 kb on - strand, within Pf6N2E2_2136at 2542.101 kb on + strand, within Pf6N2E2_2136at 2542.101 kb on + strand, within Pf6N2E2_2136at 2542.101 kb on + strand, within Pf6N2E2_2136at 2542.101 kb on + strand, within Pf6N2E2_2136at 2542.101 kb on + strand, within Pf6N2E2_2136at 2542.101 kb on + strand, within Pf6N2E2_2136at 2542.101 kb on + strand, within Pf6N2E2_2136at 2542.101 kb on + strand, within Pf6N2E2_2136at 2542.102 kb on - strand, within Pf6N2E2_2136at 2542.102 kb on - strand, within Pf6N2E2_2136at 2542.102 kb on - strand, within Pf6N2E2_2136at 2542.102 kb on - strand, within Pf6N2E2_2136at 2542.176 kb on + strand, within Pf6N2E2_2136at 2542.399 kb on + strandat 2542.400 kb on - strandat 2542.440 kb on + strandat 2542.441 kb on - strandat 2542.441 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 5mM
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2,539,600 + Pf6N2E2_2134 0.37 -0.5
2,539,600 + Pf6N2E2_2134 0.37 -0.7
2,539,600 + Pf6N2E2_2134 0.37 +0.2
2,539,600 + Pf6N2E2_2134 0.37 -0.3
2,539,601 - Pf6N2E2_2134 0.37 +0.2
2,539,601 - Pf6N2E2_2134 0.37 +0.6
2,539,601 - Pf6N2E2_2134 0.37 -0.1
2,539,601 - Pf6N2E2_2134 0.37 -0.5
2,539,651 + Pf6N2E2_2134 0.44 -0.9
2,539,651 + Pf6N2E2_2134 0.44 +1.1
2,539,651 + Pf6N2E2_2134 0.44 +1.7
2,539,652 - Pf6N2E2_2134 0.44 +0.0
2,539,652 - Pf6N2E2_2134 0.44 -2.0
2,539,652 - Pf6N2E2_2134 0.44 +0.4
2,539,652 - Pf6N2E2_2134 0.44 -0.9
2,539,652 - Pf6N2E2_2134 0.44 +0.2
2,539,699 + Pf6N2E2_2134 0.51 -1.3
2,539,700 - Pf6N2E2_2134 0.51 -1.8
2,539,700 - Pf6N2E2_2134 0.51 -0.4
2,539,700 - Pf6N2E2_2134 0.51 +1.7
2,539,700 - Pf6N2E2_2134 0.51 -0.2
2,539,838 - Pf6N2E2_2134 0.69 -1.1
2,539,838 - Pf6N2E2_2134 0.69 -2.4
2,539,858 + Pf6N2E2_2134 0.72 +0.6
2,539,858 + Pf6N2E2_2134 0.72 +0.7
2,539,859 - Pf6N2E2_2134 0.72 -1.2
2,540,274 + +0.7
2,540,364 + -0.5
2,540,364 + -1.2
2,540,364 + -0.9
2,540,364 + +1.8
2,540,365 - +0.1
2,540,365 - -0.8
2,540,391 + -0.7
2,540,452 - -0.3
2,540,548 + Pf6N2E2_2135 0.12 +0.3
2,540,549 - Pf6N2E2_2135 0.12 +1.6
2,540,558 + Pf6N2E2_2135 0.13 +0.7
2,540,558 + Pf6N2E2_2135 0.13 +0.3
2,540,558 + Pf6N2E2_2135 0.13 -2.0
2,540,559 - Pf6N2E2_2135 0.13 -0.2
2,540,787 + Pf6N2E2_2135 0.34 +0.1
2,540,905 + Pf6N2E2_2135 0.44 +0.9
2,540,905 + Pf6N2E2_2135 0.44 +0.3
2,540,906 - Pf6N2E2_2135 0.45 -1.7
2,540,906 - Pf6N2E2_2135 0.45 -0.3
2,540,942 - Pf6N2E2_2135 0.48 +0.6
2,540,942 - Pf6N2E2_2135 0.48 +0.5
2,540,992 + Pf6N2E2_2135 0.52 -0.5
2,540,993 - Pf6N2E2_2135 0.52 +0.8
2,541,061 + Pf6N2E2_2135 0.59 -0.4
2,541,061 + Pf6N2E2_2135 0.59 +1.7
2,541,062 - Pf6N2E2_2135 0.59 +0.3
2,541,062 - Pf6N2E2_2135 0.59 -2.6
2,541,117 + Pf6N2E2_2135 0.64 +0.1
2,541,159 + Pf6N2E2_2135 0.67 -1.7
2,541,271 + Pf6N2E2_2135 0.78 +0.1
2,541,272 - Pf6N2E2_2135 0.78 +0.4
2,541,272 - Pf6N2E2_2135 0.78 -1.0
2,541,272 - Pf6N2E2_2135 0.78 -0.4
2,541,272 - Pf6N2E2_2135 0.78 -0.4
2,541,304 + Pf6N2E2_2135 0.80 -0.3
2,541,304 + Pf6N2E2_2135 0.80 +0.9
2,541,304 + Pf6N2E2_2135 0.80 +0.7
2,541,305 - Pf6N2E2_2135 0.81 +0.1
2,541,305 - Pf6N2E2_2135 0.81 -1.3
2,541,305 - Pf6N2E2_2135 0.81 +0.1
2,541,332 - Pf6N2E2_2135 0.83 +0.6
2,541,332 - Pf6N2E2_2135 0.83 +0.9
2,541,332 - Pf6N2E2_2135 0.83 -1.5
2,541,382 + Pf6N2E2_2135 0.88 +0.2
2,541,481 + -0.7
2,541,481 + +0.8
2,541,481 + -0.3
2,541,482 - -0.2
2,541,482 - +1.3
2,541,518 - +1.0
2,541,518 - -0.6
2,541,579 + -0.9
2,541,579 + +1.1
2,541,616 + -1.1
2,541,616 + -0.0
2,541,616 + -0.2
2,541,617 - -0.4
2,541,617 - +0.0
2,541,617 - +0.0
2,541,939 + Pf6N2E2_2136 0.39 +0.4
2,541,939 + Pf6N2E2_2136 0.39 -0.5
2,541,939 + Pf6N2E2_2136 0.39 -1.5
2,541,939 + Pf6N2E2_2136 0.39 -0.5
2,541,940 - Pf6N2E2_2136 0.39 -0.4
2,541,940 - Pf6N2E2_2136 0.39 +0.1
2,541,940 - Pf6N2E2_2136 0.39 -0.6
2,542,101 + Pf6N2E2_2136 0.58 +1.4
2,542,101 + Pf6N2E2_2136 0.58 -0.7
2,542,101 + Pf6N2E2_2136 0.58 -0.6
2,542,101 + Pf6N2E2_2136 0.58 +0.3
2,542,101 + Pf6N2E2_2136 0.58 -1.1
2,542,101 + Pf6N2E2_2136 0.58 +1.7
2,542,101 + Pf6N2E2_2136 0.58 -0.2
2,542,101 + Pf6N2E2_2136 0.58 +0.0
2,542,102 - Pf6N2E2_2136 0.59 -0.4
2,542,102 - Pf6N2E2_2136 0.59 -0.3
2,542,102 - Pf6N2E2_2136 0.59 -0.7
2,542,102 - Pf6N2E2_2136 0.59 +1.0
2,542,176 + Pf6N2E2_2136 0.68 +0.0
2,542,399 + -0.4
2,542,400 - -1.1
2,542,440 + +1.7
2,542,441 - -0.4
2,542,441 - +0.5

Or see this region's nucleotide sequence