Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_167

Experiment: nitrogen source nitrite 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_165 and Pf6N2E2_166 overlap by 4 nucleotidesPf6N2E2_166 and Pf6N2E2_167 are separated by 30 nucleotidesPf6N2E2_167 and Pf6N2E2_168 are separated by 48 nucleotidesPf6N2E2_168 and Pf6N2E2_169 are separated by 128 nucleotidesPf6N2E2_169 and Pf6N2E2_170 are separated by 162 nucleotides Pf6N2E2_165 - Ribokinase (EC 2.7.1.15), at 218,870 to 219,784 _165 Pf6N2E2_166 - Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1), at 219,781 to 220,185 _166 Pf6N2E2_167 - Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1), at 220,216 to 221,244 _167 Pf6N2E2_168 - hypothetical protein, at 221,293 to 221,490 _168 Pf6N2E2_169 - FIG00955358: hypothetical protein, at 221,619 to 221,924 _169 Pf6N2E2_170 - lipoprotein, putative, at 222,087 to 222,401 _170 Position (kb) 220 221 222Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 219.377 kb on - strand, within Pf6N2E2_165at 219.395 kb on + strand, within Pf6N2E2_165at 219.421 kb on + strand, within Pf6N2E2_165at 219.421 kb on + strand, within Pf6N2E2_165at 219.421 kb on + strand, within Pf6N2E2_165at 219.421 kb on + strand, within Pf6N2E2_165at 219.765 kb on + strandat 219.766 kb on - strandat 219.766 kb on - strandat 219.766 kb on - strandat 220.184 kb on - strandat 220.184 kb on - strandat 220.184 kb on - strandat 220.226 kb on - strandat 220.393 kb on - strand, within Pf6N2E2_167at 220.393 kb on - strand, within Pf6N2E2_167at 220.393 kb on - strand, within Pf6N2E2_167at 220.393 kb on - strand, within Pf6N2E2_167at 220.495 kb on + strand, within Pf6N2E2_167at 220.496 kb on - strand, within Pf6N2E2_167at 220.580 kb on + strand, within Pf6N2E2_167at 220.581 kb on - strand, within Pf6N2E2_167at 220.581 kb on - strand, within Pf6N2E2_167at 220.624 kb on + strand, within Pf6N2E2_167at 220.785 kb on + strand, within Pf6N2E2_167at 220.785 kb on + strand, within Pf6N2E2_167at 220.867 kb on + strand, within Pf6N2E2_167at 220.978 kb on + strand, within Pf6N2E2_167at 220.978 kb on + strand, within Pf6N2E2_167at 220.979 kb on - strand, within Pf6N2E2_167at 220.979 kb on - strand, within Pf6N2E2_167at 220.979 kb on - strand, within Pf6N2E2_167at 220.979 kb on - strand, within Pf6N2E2_167at 220.979 kb on - strand, within Pf6N2E2_167at 220.979 kb on - strand, within Pf6N2E2_167at 221.002 kb on + strand, within Pf6N2E2_167at 221.002 kb on + strand, within Pf6N2E2_167at 221.144 kb on - strandat 221.144 kb on - strandat 221.255 kb on + strandat 221.255 kb on + strandat 221.256 kb on - strandat 221.256 kb on - strandat 221.257 kb on + strandat 221.258 kb on - strandat 221.258 kb on - strandat 221.389 kb on + strand, within Pf6N2E2_168at 221.389 kb on + strand, within Pf6N2E2_168at 221.429 kb on + strand, within Pf6N2E2_168at 221.429 kb on + strand, within Pf6N2E2_168at 221.429 kb on + strand, within Pf6N2E2_168at 221.430 kb on - strand, within Pf6N2E2_168at 221.430 kb on - strand, within Pf6N2E2_168at 221.430 kb on - strand, within Pf6N2E2_168at 221.436 kb on + strand, within Pf6N2E2_168at 221.436 kb on + strand, within Pf6N2E2_168at 221.437 kb on - strand, within Pf6N2E2_168at 221.493 kb on + strandat 221.493 kb on + strandat 221.494 kb on - strandat 221.517 kb on + strandat 221.517 kb on + strandat 221.517 kb on + strandat 221.518 kb on - strandat 221.518 kb on - strandat 221.518 kb on - strandat 221.518 kb on - strandat 221.527 kb on + strandat 221.528 kb on - strandat 221.561 kb on + strandat 221.562 kb on - strandat 221.562 kb on - strandat 221.702 kb on + strand, within Pf6N2E2_169at 221.703 kb on - strand, within Pf6N2E2_169at 221.736 kb on + strand, within Pf6N2E2_169at 221.737 kb on - strand, within Pf6N2E2_169at 221.737 kb on - strand, within Pf6N2E2_169at 221.737 kb on - strand, within Pf6N2E2_169at 221.737 kb on - strand, within Pf6N2E2_169at 221.817 kb on + strand, within Pf6N2E2_169at 221.865 kb on + strand, within Pf6N2E2_169at 221.865 kb on + strand, within Pf6N2E2_169at 221.865 kb on + strand, within Pf6N2E2_169at 221.865 kb on + strand, within Pf6N2E2_169at 221.865 kb on + strand, within Pf6N2E2_169at 221.866 kb on - strand, within Pf6N2E2_169at 221.866 kb on - strand, within Pf6N2E2_169at 221.866 kb on - strand, within Pf6N2E2_169at 221.866 kb on - strand, within Pf6N2E2_169at 221.866 kb on - strand, within Pf6N2E2_169at 221.866 kb on - strand, within Pf6N2E2_169at 221.866 kb on - strand, within Pf6N2E2_169at 221.866 kb on - strand, within Pf6N2E2_169at 221.882 kb on + strand, within Pf6N2E2_169at 221.882 kb on + strand, within Pf6N2E2_169at 221.882 kb on + strand, within Pf6N2E2_169at 221.883 kb on - strand, within Pf6N2E2_169at 221.883 kb on - strand, within Pf6N2E2_169at 221.907 kb on + strandat 221.907 kb on + strandat 221.920 kb on - strandat 222.063 kb on + strandat 222.063 kb on + strandat 222.063 kb on + strandat 222.064 kb on - strandat 222.113 kb on + strandat 222.113 kb on + strandat 222.113 kb on + strandat 222.114 kb on - strandat 222.114 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 5mM
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219,377 - Pf6N2E2_165 0.55 +0.3
219,395 + Pf6N2E2_165 0.57 +0.3
219,421 + Pf6N2E2_165 0.60 +0.6
219,421 + Pf6N2E2_165 0.60 +0.7
219,421 + Pf6N2E2_165 0.60 +0.1
219,421 + Pf6N2E2_165 0.60 -1.0
219,765 + +0.3
219,766 - -0.6
219,766 - -2.2
219,766 - -1.3
220,184 - -0.2
220,184 - +1.0
220,184 - -0.3
220,226 - -0.3
220,393 - Pf6N2E2_167 0.17 -1.1
220,393 - Pf6N2E2_167 0.17 +0.1
220,393 - Pf6N2E2_167 0.17 -0.2
220,393 - Pf6N2E2_167 0.17 +0.2
220,495 + Pf6N2E2_167 0.27 -0.4
220,496 - Pf6N2E2_167 0.27 -2.3
220,580 + Pf6N2E2_167 0.35 +1.1
220,581 - Pf6N2E2_167 0.35 -2.2
220,581 - Pf6N2E2_167 0.35 +1.7
220,624 + Pf6N2E2_167 0.40 -1.1
220,785 + Pf6N2E2_167 0.55 -0.8
220,785 + Pf6N2E2_167 0.55 -0.7
220,867 + Pf6N2E2_167 0.63 -1.5
220,978 + Pf6N2E2_167 0.74 +0.6
220,978 + Pf6N2E2_167 0.74 +1.2
220,979 - Pf6N2E2_167 0.74 +0.6
220,979 - Pf6N2E2_167 0.74 -3.2
220,979 - Pf6N2E2_167 0.74 +0.7
220,979 - Pf6N2E2_167 0.74 -1.9
220,979 - Pf6N2E2_167 0.74 +0.1
220,979 - Pf6N2E2_167 0.74 +0.1
221,002 + Pf6N2E2_167 0.76 -0.9
221,002 + Pf6N2E2_167 0.76 +0.1
221,144 - +1.7
221,144 - +0.7
221,255 + +0.8
221,255 + +0.0
221,256 - -1.5
221,256 - -1.5
221,257 + +0.2
221,258 - +1.1
221,258 - -0.4
221,389 + Pf6N2E2_168 0.48 +0.6
221,389 + Pf6N2E2_168 0.48 -1.5
221,429 + Pf6N2E2_168 0.69 -0.6
221,429 + Pf6N2E2_168 0.69 +0.7
221,429 + Pf6N2E2_168 0.69 +0.1
221,430 - Pf6N2E2_168 0.69 -0.5
221,430 - Pf6N2E2_168 0.69 -0.6
221,430 - Pf6N2E2_168 0.69 -1.1
221,436 + Pf6N2E2_168 0.72 +1.0
221,436 + Pf6N2E2_168 0.72 +0.4
221,437 - Pf6N2E2_168 0.73 -0.8
221,493 + -1.5
221,493 + -1.1
221,494 - -0.0
221,517 + +0.5
221,517 + -1.0
221,517 + -0.9
221,518 - +1.3
221,518 - -0.2
221,518 - -0.3
221,518 - +1.1
221,527 + +0.7
221,528 - -2.0
221,561 + -0.4
221,562 - +0.9
221,562 - +0.8
221,702 + Pf6N2E2_169 0.27 +0.7
221,703 - Pf6N2E2_169 0.27 +0.2
221,736 + Pf6N2E2_169 0.38 -0.8
221,737 - Pf6N2E2_169 0.39 +0.7
221,737 - Pf6N2E2_169 0.39 +0.4
221,737 - Pf6N2E2_169 0.39 +1.3
221,737 - Pf6N2E2_169 0.39 -0.8
221,817 + Pf6N2E2_169 0.65 -0.6
221,865 + Pf6N2E2_169 0.80 +0.9
221,865 + Pf6N2E2_169 0.80 -0.3
221,865 + Pf6N2E2_169 0.80 -0.8
221,865 + Pf6N2E2_169 0.80 -2.0
221,865 + Pf6N2E2_169 0.80 +0.4
221,866 - Pf6N2E2_169 0.81 -1.1
221,866 - Pf6N2E2_169 0.81 +0.1
221,866 - Pf6N2E2_169 0.81 +0.2
221,866 - Pf6N2E2_169 0.81 +1.7
221,866 - Pf6N2E2_169 0.81 +0.7
221,866 - Pf6N2E2_169 0.81 +1.7
221,866 - Pf6N2E2_169 0.81 +0.5
221,866 - Pf6N2E2_169 0.81 +1.9
221,882 + Pf6N2E2_169 0.86 -0.3
221,882 + Pf6N2E2_169 0.86 -1.5
221,882 + Pf6N2E2_169 0.86 +1.4
221,883 - Pf6N2E2_169 0.86 -0.2
221,883 - Pf6N2E2_169 0.86 +1.6
221,907 + +0.2
221,907 + -0.1
221,920 - +0.6
222,063 + +0.6
222,063 + +0.0
222,063 + +0.6
222,064 - +2.7
222,113 + +0.4
222,113 + +1.7
222,113 + -0.9
222,114 - +0.0
222,114 - +0.5

Or see this region's nucleotide sequence