Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4503

Experiment: nitrogen source Ammonium chloride 20mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4502 and Pf6N2E2_4503 are separated by 88 nucleotidesPf6N2E2_4503 and Pf6N2E2_4504 are separated by 24 nucleotides Pf6N2E2_4502 - FMN reductase (EC 1.5.1.29), at 5,234,449 to 5,235,042 _4502 Pf6N2E2_4503 - Alkanesulfonates-binding protein, at 5,235,131 to 5,236,096 _4503 Pf6N2E2_4504 - Alkanesulfonate monooxygenase (EC 1.14.14.5), at 5,236,121 to 5,237,269 _4504 Position (kb) 5235 5236 5237Strain fitness (log2 ratio) -2 -1 0 1 2at 5234.255 kb on + strandat 5234.256 kb on - strandat 5234.296 kb on + strandat 5234.296 kb on + strandat 5234.297 kb on - strandat 5234.303 kb on + strandat 5234.303 kb on + strandat 5234.303 kb on + strandat 5234.304 kb on - strandat 5234.304 kb on - strandat 5234.304 kb on - strandat 5234.369 kb on - strandat 5234.382 kb on + strandat 5234.396 kb on + strandat 5234.397 kb on - strandat 5234.397 kb on - strandat 5234.434 kb on + strandat 5234.434 kb on + strandat 5234.434 kb on + strandat 5234.434 kb on + strandat 5234.434 kb on + strandat 5234.441 kb on + strandat 5234.441 kb on + strandat 5234.557 kb on + strand, within Pf6N2E2_4502at 5234.557 kb on + strand, within Pf6N2E2_4502at 5234.557 kb on + strand, within Pf6N2E2_4502at 5234.557 kb on + strand, within Pf6N2E2_4502at 5234.557 kb on + strand, within Pf6N2E2_4502at 5234.558 kb on - strand, within Pf6N2E2_4502at 5234.558 kb on - strand, within Pf6N2E2_4502at 5234.558 kb on - strand, within Pf6N2E2_4502at 5234.677 kb on + strand, within Pf6N2E2_4502at 5234.678 kb on - strand, within Pf6N2E2_4502at 5234.678 kb on - strand, within Pf6N2E2_4502at 5234.711 kb on + strand, within Pf6N2E2_4502at 5234.746 kb on - strand, within Pf6N2E2_4502at 5234.787 kb on + strand, within Pf6N2E2_4502at 5234.803 kb on + strand, within Pf6N2E2_4502at 5234.804 kb on - strand, within Pf6N2E2_4502at 5235.002 kb on + strandat 5235.069 kb on + strandat 5235.069 kb on + strandat 5235.069 kb on + strandat 5235.069 kb on + strandat 5235.070 kb on - strandat 5235.070 kb on - strandat 5235.199 kb on + strandat 5235.199 kb on + strandat 5235.200 kb on - strandat 5235.200 kb on - strandat 5235.200 kb on - strandat 5235.437 kb on + strand, within Pf6N2E2_4503at 5235.437 kb on + strand, within Pf6N2E2_4503at 5235.438 kb on - strand, within Pf6N2E2_4503at 5235.438 kb on - strand, within Pf6N2E2_4503at 5235.438 kb on - strand, within Pf6N2E2_4503at 5235.438 kb on - strand, within Pf6N2E2_4503at 5235.438 kb on - strand, within Pf6N2E2_4503at 5235.438 kb on - strand, within Pf6N2E2_4503at 5235.438 kb on - strand, within Pf6N2E2_4503at 5235.438 kb on - strand, within Pf6N2E2_4503at 5235.438 kb on - strand, within Pf6N2E2_4503at 5235.438 kb on - strand, within Pf6N2E2_4503at 5235.446 kb on + strand, within Pf6N2E2_4503at 5235.446 kb on + strand, within Pf6N2E2_4503at 5235.447 kb on - strand, within Pf6N2E2_4503at 5235.447 kb on - strand, within Pf6N2E2_4503at 5235.447 kb on - strand, within Pf6N2E2_4503at 5235.564 kb on - strand, within Pf6N2E2_4503at 5235.564 kb on - strand, within Pf6N2E2_4503at 5235.602 kb on + strand, within Pf6N2E2_4503at 5235.773 kb on + strand, within Pf6N2E2_4503at 5235.774 kb on - strand, within Pf6N2E2_4503at 5235.792 kb on - strand, within Pf6N2E2_4503at 5235.891 kb on + strand, within Pf6N2E2_4503at 5236.013 kb on + strandat 5236.013 kb on + strandat 5236.013 kb on + strandat 5236.013 kb on + strandat 5236.013 kb on + strandat 5236.014 kb on - strandat 5236.014 kb on - strandat 5236.014 kb on - strandat 5236.014 kb on - strandat 5236.094 kb on + strandat 5236.094 kb on + strandat 5236.094 kb on + strandat 5236.094 kb on + strandat 5236.095 kb on - strandat 5236.132 kb on + strandat 5236.169 kb on + strandat 5236.169 kb on + strandat 5236.169 kb on + strandat 5236.532 kb on - strand, within Pf6N2E2_4504at 5236.568 kb on + strand, within Pf6N2E2_4504at 5236.569 kb on - strand, within Pf6N2E2_4504at 5236.591 kb on + strand, within Pf6N2E2_4504at 5236.785 kb on + strand, within Pf6N2E2_4504at 5237.075 kb on + strand, within Pf6N2E2_4504at 5237.076 kb on - strand, within Pf6N2E2_4504

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source Ammonium chloride 20mM
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5,234,255 + +0.8
5,234,256 - -2.1
5,234,296 + -0.5
5,234,296 + -1.2
5,234,297 - +0.9
5,234,303 + +0.6
5,234,303 + -2.0
5,234,303 + +1.6
5,234,304 - -0.3
5,234,304 - -2.0
5,234,304 - -2.0
5,234,369 - -2.4
5,234,382 + -2.5
5,234,396 + +0.1
5,234,397 - -0.9
5,234,397 - -0.7
5,234,434 + -0.4
5,234,434 + -1.1
5,234,434 + -1.4
5,234,434 + -0.1
5,234,434 + -1.2
5,234,441 + -0.1
5,234,441 + +0.0
5,234,557 + Pf6N2E2_4502 0.18 -1.2
5,234,557 + Pf6N2E2_4502 0.18 +0.2
5,234,557 + Pf6N2E2_4502 0.18 +1.6
5,234,557 + Pf6N2E2_4502 0.18 -1.2
5,234,557 + Pf6N2E2_4502 0.18 -0.8
5,234,558 - Pf6N2E2_4502 0.18 -2.5
5,234,558 - Pf6N2E2_4502 0.18 +1.6
5,234,558 - Pf6N2E2_4502 0.18 -0.1
5,234,677 + Pf6N2E2_4502 0.38 +0.0
5,234,678 - Pf6N2E2_4502 0.39 +0.6
5,234,678 - Pf6N2E2_4502 0.39 -0.2
5,234,711 + Pf6N2E2_4502 0.44 -1.4
5,234,746 - Pf6N2E2_4502 0.50 +0.3
5,234,787 + Pf6N2E2_4502 0.57 -1.7
5,234,803 + Pf6N2E2_4502 0.60 +0.1
5,234,804 - Pf6N2E2_4502 0.60 -0.4
5,235,002 + +0.6
5,235,069 + +1.6
5,235,069 + -2.4
5,235,069 + -0.6
5,235,069 + +1.0
5,235,070 - +0.2
5,235,070 - -0.9
5,235,199 + +0.1
5,235,199 + -2.3
5,235,200 - +1.6
5,235,200 - +0.4
5,235,200 - -0.9
5,235,437 + Pf6N2E2_4503 0.32 -2.0
5,235,437 + Pf6N2E2_4503 0.32 -1.1
5,235,438 - Pf6N2E2_4503 0.32 -1.1
5,235,438 - Pf6N2E2_4503 0.32 -2.1
5,235,438 - Pf6N2E2_4503 0.32 -1.4
5,235,438 - Pf6N2E2_4503 0.32 -1.0
5,235,438 - Pf6N2E2_4503 0.32 +1.8
5,235,438 - Pf6N2E2_4503 0.32 +0.2
5,235,438 - Pf6N2E2_4503 0.32 +0.1
5,235,438 - Pf6N2E2_4503 0.32 -0.1
5,235,438 - Pf6N2E2_4503 0.32 -0.9
5,235,438 - Pf6N2E2_4503 0.32 -0.1
5,235,446 + Pf6N2E2_4503 0.33 +0.6
5,235,446 + Pf6N2E2_4503 0.33 -1.3
5,235,447 - Pf6N2E2_4503 0.33 -0.4
5,235,447 - Pf6N2E2_4503 0.33 -0.1
5,235,447 - Pf6N2E2_4503 0.33 -0.8
5,235,564 - Pf6N2E2_4503 0.45 -0.1
5,235,564 - Pf6N2E2_4503 0.45 -1.0
5,235,602 + Pf6N2E2_4503 0.49 -0.3
5,235,773 + Pf6N2E2_4503 0.66 +0.0
5,235,774 - Pf6N2E2_4503 0.67 +0.3
5,235,792 - Pf6N2E2_4503 0.68 -0.4
5,235,891 + Pf6N2E2_4503 0.79 -0.4
5,236,013 + -1.2
5,236,013 + -0.2
5,236,013 + +1.6
5,236,013 + -0.7
5,236,013 + -0.7
5,236,014 - -0.8
5,236,014 - -0.2
5,236,014 - +1.6
5,236,014 - -0.4
5,236,094 + -1.5
5,236,094 + -0.2
5,236,094 + +1.3
5,236,094 + +0.2
5,236,095 - +0.9
5,236,132 + -2.1
5,236,169 + -1.4
5,236,169 + +0.5
5,236,169 + -0.4
5,236,532 - Pf6N2E2_4504 0.36 -0.9
5,236,568 + Pf6N2E2_4504 0.39 -0.4
5,236,569 - Pf6N2E2_4504 0.39 -0.3
5,236,591 + Pf6N2E2_4504 0.41 -1.2
5,236,785 + Pf6N2E2_4504 0.58 -1.3
5,237,075 + Pf6N2E2_4504 0.83 -0.6
5,237,076 - Pf6N2E2_4504 0.83 +1.2

Or see this region's nucleotide sequence