Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS13695

Experiment: trans-aconitic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	trans-aconitic 5 mM (C)
3,096,741	-		PFLU_RS13685	0.84	-1.3
3,096,741	-		PFLU_RS13685	0.84	-0.4
3,096,741	-		PFLU_RS13685	0.84	-0.3
3,096,950	-				+0.2
3,096,962	+				+1.1
3,096,962	+				-0.9
3,096,962	+				-0.6
3,096,962	+				-0.3
3,096,963	-				-3.1
3,096,963	-				-1.5
3,096,963	-				+0.7
3,096,963	-				+1.3
3,096,985	+				-0.2
3,096,985	+				+1.2
3,097,076	-				-0.9
3,097,076	-				+0.5
3,097,076	-				-0.0
3,097,076	-				+2.5
3,097,079	+				-0.1
3,097,079	+				+1.2
3,097,080	-				-0.9
3,097,102	-				-0.8
3,097,119	-				+1.7
3,097,159	+				+0.1
3,097,159	+				+0.0
3,097,159	+				-0.3
3,097,159	+				-0.4
3,097,159	+				-0.9
3,097,173	+				-0.4
3,097,173	+				-2.5
3,097,173	+				-0.9
3,097,173	+				-0.7
3,097,173	+				-0.5
3,097,173	+				+0.6
3,097,173	+				-1.3
3,097,173	+				-0.4
3,097,174	-				+1.2
3,097,174	-				+1.7
3,097,174	-				+0.9
3,097,363	+		PFLU_RS13690	0.39	-0.2
3,097,363	+		PFLU_RS13690	0.39	-0.9
3,097,403	-		PFLU_RS13690	0.47	+0.4
3,097,544	+		PFLU_RS13690	0.74	-0.7
3,097,544	+		PFLU_RS13690	0.74	-0.4
3,097,544	+		PFLU_RS13690	0.74	+0.7
3,097,545	-		PFLU_RS13690	0.75	+1.5
3,097,545	-		PFLU_RS13690	0.75	+0.1
3,097,545	-		PFLU_RS13690	0.75	-1.7
3,097,579	+		PFLU_RS13690	0.81	-0.2
3,097,579	+		PFLU_RS13690	0.81	-0.3
3,097,579	+		PFLU_RS13690	0.81	+0.9
3,097,579	+		PFLU_RS13690	0.81	+2.7
3,097,579	+		PFLU_RS13690	0.81	+0.9
3,097,579	+		PFLU_RS13690	0.81	+0.1
3,097,579	+		PFLU_RS13690	0.81	-1.0
3,097,579	+		PFLU_RS13690	0.81	-0.3
3,097,580	-		PFLU_RS13690	0.81	+0.3
3,097,580	-		PFLU_RS13690	0.81	-0.9
3,097,637	+				-0.8
3,097,638	-				+0.7
3,097,743	+		PFLU_RS13695	0.12	-0.1
3,097,773	+		PFLU_RS13695	0.18	-0.1
3,097,782	-		PFLU_RS13695	0.19	+0.0
3,097,782	-		PFLU_RS13695	0.19	-0.1
3,097,782	-		PFLU_RS13695	0.19	-0.5
3,097,782	-		PFLU_RS13695	0.19	-0.1
3,097,782	-		PFLU_RS13695	0.19	+0.4
3,098,052	+		PFLU_RS13695	0.67	+0.0
3,098,052	+		PFLU_RS13695	0.67	+0.7
3,098,070	+		PFLU_RS13695	0.70	-0.1
3,098,071	-		PFLU_RS13695	0.71	-0.4
3,098,071	-		PFLU_RS13695	0.71	+2.1
3,098,106	-		PFLU_RS13695	0.77	+1.3
3,098,106	-		PFLU_RS13695	0.77	+0.7
3,098,127	+		PFLU_RS13695	0.80	+0.1
3,098,127	+		PFLU_RS13695	0.80	-2.1
3,098,127	+		PFLU_RS13695	0.80	-0.3
3,098,127	+		PFLU_RS13695	0.80	+0.4
3,098,127	+		PFLU_RS13695	0.80	-1.6
3,098,127	+		PFLU_RS13695	0.80	+1.4
3,098,127	+		PFLU_RS13695	0.80	+1.4
3,098,128	-		PFLU_RS13695	0.81	+0.4
3,098,128	-		PFLU_RS13695	0.81	+0.1
3,098,274	+				-0.7
3,098,274	+				+0.9
3,098,274	+				-2.1
3,098,274	+				+0.5
3,098,274	+				+0.3
3,098,274	+				+0.7
3,098,275	-				+0.2
3,098,275	-				+0.3
3,098,275	-				+0.3
3,098,293	+				-1.3
3,098,310	-				-2.1
3,098,310	-				+0.1
3,098,368	-				-1.1
3,098,380	+				-0.1
3,098,390	-				+1.3
3,098,390	-				-1.6
3,098,390	-				+0.4
3,098,460	+				-0.2
3,098,460	+				-1.1
3,098,460	+				-0.6
3,098,518	-				+0.1
3,098,518	-				+1.0
3,098,518	-				-0.8
3,099,038	-		PFLU_RS13700	0.32	-1.0
3,099,213	+		PFLU_RS13700	0.43	-0.7
3,099,213	+		PFLU_RS13700	0.43	-0.0
3,099,214	-		PFLU_RS13700	0.43	+0.1
3,099,214	-		PFLU_RS13700	0.43	+0.7