Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS10525

Experiment: trans-aconitic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	trans-aconitic 5 mM (C)
2,319,096	+		PFLU_RS10520	0.42	-0.3
2,319,096	+		PFLU_RS10520	0.42	+0.2
2,319,097	-		PFLU_RS10520	0.42	-0.6
2,319,352	-		PFLU_RS10520	0.63	+0.2
2,319,500	+		PFLU_RS10520	0.75	+1.2
2,319,500	+		PFLU_RS10520	0.75	-0.9
2,319,500	+		PFLU_RS10520	0.75	-0.4
2,319,500	+		PFLU_RS10520	0.75	+2.2
2,319,500	+		PFLU_RS10520	0.75	-0.3
2,319,500	+		PFLU_RS10520	0.75	-0.7
2,319,547	+		PFLU_RS10520	0.79	+0.6
2,319,547	+		PFLU_RS10520	0.79	-2.1
2,319,547	+		PFLU_RS10520	0.79	-1.5
2,319,548	-		PFLU_RS10520	0.79	+1.2
2,319,548	-		PFLU_RS10520	0.79	+0.1
2,319,548	-		PFLU_RS10520	0.79	-0.5
2,319,590	+		PFLU_RS10520	0.82	-0.7
2,319,591	-		PFLU_RS10520	0.83	-0.6
2,319,591	-		PFLU_RS10520	0.83	+1.3
2,319,591	-		PFLU_RS10520	0.83	+0.4
2,319,591	-		PFLU_RS10520	0.83	-0.3
2,319,624	+		PFLU_RS10520	0.85	-1.7
2,319,625	-		PFLU_RS10520	0.85	+0.2
2,319,625	-		PFLU_RS10520	0.85	-0.2
2,319,625	-		PFLU_RS10520	0.85	-0.3
2,319,625	-		PFLU_RS10520	0.85	+0.9
2,319,803	+				+1.1
2,319,803	+				+0.3
2,319,804	-				+0.0
2,319,804	-				+0.2
2,319,817	+				-0.1
2,319,817	+				+0.7
2,319,856	+				-0.2
2,319,856	+				+1.0
2,319,856	+				-2.0
2,319,857	-				+0.2
2,319,877	+				-0.5
2,319,877	+				-0.7
2,319,877	+				+1.3
2,319,877	+				-1.0
2,319,877	+				+0.7
2,319,877	+				+0.6
2,319,877	+				-0.5
2,319,878	-				-0.7
2,319,878	-				+0.9
2,319,878	-				-0.1
2,319,887	+				+0.3
2,319,977	+				+0.9
2,319,978	-				-0.7
2,320,070	+				-0.1
2,320,212	+		PFLU_RS10525	0.16	-1.3
2,320,212	+		PFLU_RS10525	0.16	+2.2
2,320,213	-		PFLU_RS10525	0.16	+0.5
2,320,213	-		PFLU_RS10525	0.16	-0.6
2,320,244	+		PFLU_RS10525	0.18	-0.7
2,320,245	-		PFLU_RS10525	0.18	-0.5
2,320,245	-		PFLU_RS10525	0.18	-0.9
2,320,278	-		PFLU_RS10525	0.21	-0.8
2,320,301	+		PFLU_RS10525	0.23	-0.2
2,320,302	-		PFLU_RS10525	0.23	+0.0
2,320,302	-		PFLU_RS10525	0.23	-0.1
2,320,488	-		PFLU_RS10525	0.39	-0.6
2,320,556	+		PFLU_RS10525	0.45	+0.9
2,320,556	+		PFLU_RS10525	0.45	-0.1
2,320,557	-		PFLU_RS10525	0.45	-0.4
2,320,557	-		PFLU_RS10525	0.45	-1.0
2,320,557	-		PFLU_RS10525	0.45	-2.1
2,320,557	-		PFLU_RS10525	0.45	+0.1
2,320,560	+		PFLU_RS10525	0.46	-0.1
2,320,560	+		PFLU_RS10525	0.46	+2.1
2,320,560	+		PFLU_RS10525	0.46	+0.5
2,320,560	+		PFLU_RS10525	0.46	-1.1
2,320,560	+		PFLU_RS10525	0.46	-0.6
2,320,561	-		PFLU_RS10525	0.46	+1.1
2,320,561	-		PFLU_RS10525	0.46	-1.4
2,320,646	+		PFLU_RS10525	0.53	+0.0
2,320,646	+		PFLU_RS10525	0.53	+0.6
2,320,647	-		PFLU_RS10525	0.53	-0.3
2,320,689	+		PFLU_RS10525	0.57	-1.6
2,320,690	-		PFLU_RS10525	0.57	+0.9
2,320,690	-		PFLU_RS10525	0.57	-0.5
2,320,695	+		PFLU_RS10525	0.57	+1.0
2,320,695	+		PFLU_RS10525	0.57	-0.1
2,320,695	+		PFLU_RS10525	0.57	+1.1
2,320,695	+		PFLU_RS10525	0.57	-1.2
2,320,695	+		PFLU_RS10525	0.57	-0.7
2,320,696	-		PFLU_RS10525	0.57	+1.4
2,320,696	-		PFLU_RS10525	0.57	-0.7
2,320,696	-		PFLU_RS10525	0.57	+0.4
2,320,696	-		PFLU_RS10525	0.57	+1.0
2,320,696	-		PFLU_RS10525	0.57	-0.1
2,320,696	-		PFLU_RS10525	0.57	+1.9
2,320,696	-		PFLU_RS10525	0.57	-0.5
2,320,696	-		PFLU_RS10525	0.57	-0.6
2,320,853	+		PFLU_RS10525	0.71	-0.5
2,320,853	+		PFLU_RS10525	0.71	-0.7
2,320,853	+		PFLU_RS10525	0.71	-1.0
2,320,853	+		PFLU_RS10525	0.71	+1.4
2,320,854	-		PFLU_RS10525	0.71	-0.4
2,320,854	-		PFLU_RS10525	0.71	-2.1
2,321,309	+				+0.1
2,321,309	+				+0.9
2,321,309	+				-1.7
2,321,309	+				+0.9
2,321,309	+				+0.3
2,321,309	+				-0.7
2,321,309	+				+0.7
2,321,310	-				-0.9
2,321,310	-				-2.0
2,321,310	-				-0.1
2,321,310	-				-1.0
2,321,310	-				-0.5
2,321,310	-				+1.2
2,321,310	-				-1.1
2,321,310	-				+0.0
2,321,310	-				+1.4
2,321,310	-				-1.4
2,321,310	-				-0.1
2,321,310	-				+1.3
2,321,310	-				+1.2
2,321,329	-				+0.9
2,321,405	+		PFLU_RS10530	0.10	-0.7
2,321,405	+		PFLU_RS10530	0.10	+0.4
2,321,406	-		PFLU_RS10530	0.10	-1.1
2,321,454	-		PFLU_RS10530	0.16	+1.4
2,321,675	+		PFLU_RS10530	0.40	-0.9
2,321,675	+		PFLU_RS10530	0.40	+0.3
2,321,675	+		PFLU_RS10530	0.40	+0.9
2,321,675	+		PFLU_RS10530	0.40	-0.1
2,321,676	-		PFLU_RS10530	0.40	+1.0
2,321,676	-		PFLU_RS10530	0.40	-0.1
2,321,676	-		PFLU_RS10530	0.40	+0.9
2,321,725	+		PFLU_RS10530	0.46	-0.9
2,321,737	-		PFLU_RS10530	0.47	+1.3
2,321,738	+		PFLU_RS10530	0.47	-1.3
2,321,738	+		PFLU_RS10530	0.47	+0.3
2,321,738	+		PFLU_RS10530	0.47	-0.7
2,321,738	+		PFLU_RS10530	0.47	-0.4
2,321,738	+		PFLU_RS10530	0.47	-1.0
2,321,738	+		PFLU_RS10530	0.47	-2.7