Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_421 and Pf6N2E2_422 are separated by 551 nucleotides Pf6N2E2_422 and Pf6N2E2_423 are separated by 20 nucleotides Pf6N2E2_423 and Pf6N2E2_424 are separated by 129 nucleotides
Pf6N2E2_421 - Methyl-accepting chemotaxis protein, at 488,862 to 490,013
_421
Pf6N2E2_422 - Na+ driven multidrug efflux pump, at 490,565 to 491,863
_422
Pf6N2E2_423 - Putative phosphatase YfbT, at 491,884 to 492,588
_423
Pf6N2E2_424 - Decarboxylase family protein, at 492,718 to 494,091
_424
Position (kb) 490
491
492 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 489.903 kb on + strand at 489.904 kb on - strand at 490.106 kb on + strand at 490.106 kb on + strand at 490.106 kb on + strand at 490.107 kb on - strand at 490.107 kb on - strand at 490.107 kb on - strand at 490.107 kb on - strand at 490.117 kb on - strand at 490.117 kb on - strand at 490.178 kb on + strand at 490.179 kb on - strand at 490.190 kb on + strand at 490.190 kb on + strand at 490.190 kb on + strand at 490.197 kb on + strand at 490.198 kb on - strand at 490.213 kb on - strand at 490.262 kb on + strand at 490.263 kb on - strand at 490.544 kb on + strand at 490.545 kb on - strand at 490.545 kb on - strand at 490.616 kb on + strand at 490.616 kb on + strand at 490.616 kb on + strand at 490.616 kb on + strand at 490.617 kb on - strand at 490.617 kb on - strand at 490.617 kb on - strand at 490.617 kb on - strand at 490.617 kb on - strand at 490.904 kb on + strand, within Pf6N2E2_422 at 490.904 kb on + strand, within Pf6N2E2_422 at 490.905 kb on - strand, within Pf6N2E2_422 at 490.945 kb on - strand, within Pf6N2E2_422 at 490.945 kb on - strand, within Pf6N2E2_422 at 490.945 kb on - strand, within Pf6N2E2_422 at 491.241 kb on + strand, within Pf6N2E2_422 at 491.241 kb on + strand, within Pf6N2E2_422 at 491.242 kb on - strand, within Pf6N2E2_422 at 491.312 kb on - strand, within Pf6N2E2_422 at 491.366 kb on + strand, within Pf6N2E2_422 at 491.366 kb on + strand, within Pf6N2E2_422 at 491.366 kb on + strand, within Pf6N2E2_422 at 491.366 kb on + strand, within Pf6N2E2_422 at 491.366 kb on + strand, within Pf6N2E2_422 at 491.366 kb on + strand, within Pf6N2E2_422 at 491.366 kb on + strand, within Pf6N2E2_422 at 491.366 kb on + strand, within Pf6N2E2_422 at 491.366 kb on + strand, within Pf6N2E2_422 at 491.366 kb on + strand, within Pf6N2E2_422 at 491.367 kb on - strand, within Pf6N2E2_422 at 491.367 kb on - strand, within Pf6N2E2_422 at 491.367 kb on - strand, within Pf6N2E2_422 at 491.367 kb on - strand at 491.495 kb on - strand, within Pf6N2E2_422 at 491.519 kb on + strand, within Pf6N2E2_422 at 491.519 kb on + strand, within Pf6N2E2_422 at 491.686 kb on + strand, within Pf6N2E2_422 at 491.687 kb on - strand, within Pf6N2E2_422 at 491.729 kb on + strand, within Pf6N2E2_422 at 491.730 kb on - strand, within Pf6N2E2_422 at 491.786 kb on + strand at 491.787 kb on - strand at 491.817 kb on - strand at 491.819 kb on + strand at 491.820 kb on - strand at 491.861 kb on + strand at 491.877 kb on + strand at 491.877 kb on + strand at 491.877 kb on + strand at 491.877 kb on + strand at 491.878 kb on - strand at 491.878 kb on - strand at 491.878 kb on - strand at 491.878 kb on - strand at 492.279 kb on + strand, within Pf6N2E2_423 at 492.486 kb on + strand, within Pf6N2E2_423 at 492.526 kb on + strand at 492.526 kb on + strand at 492.527 kb on - strand at 492.527 kb on - strand at 492.527 kb on - strand at 492.584 kb on + strand at 492.584 kb on + strand at 492.585 kb on - strand at 492.585 kb on - strand at 492.585 kb on - strand at 492.585 kb on - strand at 492.660 kb on + strand at 492.714 kb on + strand at 492.715 kb on - strand at 492.746 kb on + strand at 492.746 kb on + strand at 492.747 kb on - strand at 492.747 kb on - strand at 492.747 kb on - strand at 492.747 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 489,903 + -1.4 489,904 - +0.3 490,106 + +0.4 490,106 + +1.1 490,106 + -1.9 490,107 - -0.6 490,107 - -0.8 490,107 - -1.3 490,107 - -0.5 490,117 - +1.7 490,117 - +1.7 490,178 + -0.6 490,179 - +1.7 490,190 + -1.7 490,190 + -3.4 490,190 + -0.6 490,197 + -0.3 490,198 - +1.7 490,213 - -1.3 490,262 + -1.3 490,263 - +0.1 490,544 + +0.2 490,545 - -0.3 490,545 - -0.6 490,616 + -0.9 490,616 + -1.9 490,616 + -0.3 490,616 + +0.4 490,617 - -0.6 490,617 - +0.7 490,617 - -3.1 490,617 - -1.9 490,617 - -0.2 490,904 + Pf6N2E2_422 0.26 +0.8 490,904 + Pf6N2E2_422 0.26 +0.0 490,905 - Pf6N2E2_422 0.26 +0.9 490,945 - Pf6N2E2_422 0.29 -1.3 490,945 - Pf6N2E2_422 0.29 -0.5 490,945 - Pf6N2E2_422 0.29 -1.7 491,241 + Pf6N2E2_422 0.52 -0.8 491,241 + Pf6N2E2_422 0.52 -1.1 491,242 - Pf6N2E2_422 0.52 +1.7 491,312 - Pf6N2E2_422 0.58 -2.4 491,366 + Pf6N2E2_422 0.62 -0.9 491,366 + Pf6N2E2_422 0.62 -3.3 491,366 + Pf6N2E2_422 0.62 -3.3 491,366 + Pf6N2E2_422 0.62 +0.2 491,366 + Pf6N2E2_422 0.62 -1.0 491,366 + Pf6N2E2_422 0.62 -0.5 491,366 + Pf6N2E2_422 0.62 +0.2 491,366 + Pf6N2E2_422 0.62 -0.4 491,366 + Pf6N2E2_422 0.62 +0.8 491,366 + Pf6N2E2_422 0.62 +0.2 491,367 - Pf6N2E2_422 0.62 +0.1 491,367 - Pf6N2E2_422 0.62 -1.4 491,367 - Pf6N2E2_422 0.62 -1.1 491,367 - +1.0 491,495 - Pf6N2E2_422 0.72 +0.1 491,519 + Pf6N2E2_422 0.73 -2.7 491,519 + Pf6N2E2_422 0.73 -3.2 491,686 + Pf6N2E2_422 0.86 -0.4 491,687 - Pf6N2E2_422 0.86 -0.1 491,729 + Pf6N2E2_422 0.90 -2.0 491,730 - Pf6N2E2_422 0.90 -1.6 491,786 + +0.4 491,787 - -1.4 491,817 - +1.7 491,819 + +1.1 491,820 - +0.1 491,861 + -0.0 491,877 + +0.4 491,877 + -2.1 491,877 + -1.4 491,877 + +0.2 491,878 - -0.5 491,878 - +1.7 491,878 - -1.0 491,878 - +1.7 492,279 + Pf6N2E2_423 0.56 -0.1 492,486 + Pf6N2E2_423 0.85 +1.1 492,526 + +0.7 492,526 + -0.9 492,527 - -1.3 492,527 - +1.0 492,527 - -0.8 492,584 + -1.8 492,584 + -0.1 492,585 - -0.4 492,585 - +0.7 492,585 - +0.7 492,585 - -2.2 492,660 + -1.2 492,714 + +1.7 492,715 - +0.6 492,746 + -1.0 492,746 + +0.7 492,747 - -3.4 492,747 - -0.3 492,747 - +1.5 492,747 - +1.7
Or see this region's nucleotide sequence