Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3949

Experiment: nitrogen source nitrite 0.5mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 0.5mM
4,586,758	+		Pf6N2E2_3948	0.69	+0.2
4,586,758	+		Pf6N2E2_3948	0.69	+0.0
4,586,759	-		Pf6N2E2_3948	0.70	-0.2
4,586,759	-		Pf6N2E2_3948	0.70	-2.0
4,586,875	-		Pf6N2E2_3948	0.75	-0.6
4,587,085	+		Pf6N2E2_3948	0.84	+0.2
4,587,086	-		Pf6N2E2_3948	0.84	+0.6
4,587,086	-		Pf6N2E2_3948	0.84	+1.1
4,587,086	-		Pf6N2E2_3948	0.84	-0.4
4,587,433	+				-0.7
4,587,433	+				-2.4
4,587,433	+				-2.6
4,587,433	+				+0.6
4,587,433	+				+0.3
4,587,433	+				-2.3
4,587,434	-				-0.4
4,587,434	-				-0.9
4,587,566	+				+1.6
4,587,567	-				-0.4
4,587,568	+				+1.6
4,587,568	+				-0.1
4,587,568	+				+0.6
4,587,569	-				-0.7
4,587,569	-				-0.1
4,587,569	-				+0.3
4,587,569	-				-2.7
4,587,569	-				+0.5
4,587,668	+				-1.2
4,587,668	+				-0.4
4,587,669	-				-0.4
4,587,680	+				-0.4
4,587,680	+				-0.7
4,587,680	+				-2.7
4,587,680	+				+1.0
4,587,680	+				+1.0
4,587,681	-				-0.9
4,587,681	-				-1.6
4,587,709	+				-1.3
4,587,709	+				+2.3
4,587,710	-				-3.2
4,587,710	-				-0.7
4,587,744	-				-1.1
4,587,870	-				-1.1
4,587,884	+				-1.0
4,587,884	+				-1.0
4,587,885	-				-0.5
4,587,918	+				-1.0
4,587,919	-				+0.6
4,588,175	+		Pf6N2E2_3949	0.18	-0.4
4,588,175	+		Pf6N2E2_3949	0.18	-1.1
4,588,176	-		Pf6N2E2_3949	0.18	+0.3
4,588,176	-		Pf6N2E2_3949	0.18	-0.6
4,588,176	-		Pf6N2E2_3949	0.18	-0.1
4,588,325	+		Pf6N2E2_3949	0.22	+0.1
4,588,325	+		Pf6N2E2_3949	0.22	-2.0
4,588,326	-		Pf6N2E2_3949	0.23	-0.9
4,588,438	+		Pf6N2E2_3949	0.26	+0.1
4,588,451	+		Pf6N2E2_3949	0.27	-0.0
4,588,451	+		Pf6N2E2_3949	0.27	-2.5
4,588,451	+		Pf6N2E2_3949	0.27	+1.6
4,588,451	+		Pf6N2E2_3949	0.27	+0.5
4,588,452	-		Pf6N2E2_3949	0.27	+1.6
4,588,455	+		Pf6N2E2_3949	0.27	-0.2
4,588,455	+		Pf6N2E2_3949	0.27	-2.5
4,588,455	+		Pf6N2E2_3949	0.27	+0.0
4,588,456	-		Pf6N2E2_3949	0.27	-1.7
4,588,456	-		Pf6N2E2_3949	0.27	-1.4
4,588,456	-		Pf6N2E2_3949	0.27	-0.7
4,588,598	+		Pf6N2E2_3949	0.31	-0.7
4,588,598	+		Pf6N2E2_3949	0.31	+2.6
4,588,599	-		Pf6N2E2_3949	0.31	+0.0
4,588,614	+		Pf6N2E2_3949	0.32	-1.2
4,588,614	+		Pf6N2E2_3949	0.32	-1.3
4,588,615	-		Pf6N2E2_3949	0.32	+0.2
4,588,742	+		Pf6N2E2_3949	0.36	-0.6
4,588,742	+		Pf6N2E2_3949	0.36	-0.5
4,588,742	+		Pf6N2E2_3949	0.36	-1.0
4,588,742	+		Pf6N2E2_3949	0.36	-3.1
4,588,743	-		Pf6N2E2_3949	0.36	+0.1
4,588,844	+		Pf6N2E2_3949	0.40	-0.2
4,588,847	+		Pf6N2E2_3949	0.40	-0.5
4,588,881	-		Pf6N2E2_3949	0.41	-1.4
4,588,881	-		Pf6N2E2_3949	0.41	-0.2
4,588,881	-		Pf6N2E2_3949	0.41	+0.0
4,588,881	-		Pf6N2E2_3949	0.41	-0.5
4,588,907	+		Pf6N2E2_3949	0.42	-0.3
4,588,907	+		Pf6N2E2_3949	0.42	-0.6
4,588,907	+		Pf6N2E2_3949	0.42	+1.6
4,588,907	+		Pf6N2E2_3949	0.42	+0.5
4,588,907	+		Pf6N2E2_3949	0.42	+0.4
4,588,907	+		Pf6N2E2_3949	0.42	-2.5
4,588,907	+		Pf6N2E2_3949	0.42	-2.3
4,588,907	+		Pf6N2E2_3949	0.42	-0.5
4,588,907	+		Pf6N2E2_3949	0.42	-2.0
4,588,908	-		Pf6N2E2_3949	0.42	+0.6
4,588,908	-		Pf6N2E2_3949	0.42	+0.9
4,588,908	-		Pf6N2E2_3949	0.42	-3.1
4,588,908	-		Pf6N2E2_3949	0.42	-0.4
4,588,908	-		Pf6N2E2_3949	0.42	-1.0
4,588,908	-		Pf6N2E2_3949	0.42	-0.9
4,588,908	-		Pf6N2E2_3949	0.42	+1.6
4,588,908	-		Pf6N2E2_3949	0.42	+0.7
4,589,240	-		Pf6N2E2_3949	0.52	-1.0
4,589,240	-		Pf6N2E2_3949	0.52	+0.0
4,589,240	-		Pf6N2E2_3949	0.52	-3.6
4,589,303	+		Pf6N2E2_3949	0.55	+0.0
4,589,303	+		Pf6N2E2_3949	0.55	-0.6
4,589,304	-		Pf6N2E2_3949	0.55	-2.4
4,589,304	-		Pf6N2E2_3949	0.55	-3.0
4,589,304	-		Pf6N2E2_3949	0.55	-2.6
4,589,304	-		Pf6N2E2_3949	0.55	-0.5
4,589,394	+		Pf6N2E2_3949	0.58	-1.2
4,589,394	+		Pf6N2E2_3949	0.58	-0.1
4,589,395	-		Pf6N2E2_3949	0.58	-1.2
4,589,396	+		Pf6N2E2_3949	0.58	+1.6
4,589,396	+		Pf6N2E2_3949	0.58	-2.8
4,589,396	+		Pf6N2E2_3949	0.58	-0.4
4,589,396	+		Pf6N2E2_3949	0.58	+1.6
4,589,396	+		Pf6N2E2_3949	0.58	-2.0
4,589,397	-		Pf6N2E2_3949	0.58	-1.6
4,589,533	+		Pf6N2E2_3949	0.62	-0.3
4,589,533	+		Pf6N2E2_3949	0.62	+0.3
4,589,534	-		Pf6N2E2_3949	0.62	-1.8
4,589,541	+		Pf6N2E2_3949	0.62	-0.1
4,589,542	-		Pf6N2E2_3949	0.62	+1.6
4,589,542	-		Pf6N2E2_3949	0.62	+0.1
4,589,542	-		Pf6N2E2_3949	0.62	+1.6
4,589,543	+		Pf6N2E2_3949	0.62	+1.6
4,589,543	+		Pf6N2E2_3949	0.62	-2.0
4,589,543	+		Pf6N2E2_3949	0.62	-0.8
4,589,543	+		Pf6N2E2_3949	0.62	+0.6
4,589,544	-		Pf6N2E2_3949	0.62	-1.4
4,589,544	-		Pf6N2E2_3949	0.62	-1.2
4,589,544	-		Pf6N2E2_3949	0.62	-0.2
4,589,544	-		Pf6N2E2_3949	0.62	-2.8
4,589,544	-		Pf6N2E2_3949	0.62	-0.5
4,589,544	-		Pf6N2E2_3949	0.62	-0.8
4,589,544	-		Pf6N2E2_3949	0.62	-1.3
4,589,572	+		Pf6N2E2_3949	0.63	-0.2
4,589,721	+		Pf6N2E2_3949	0.68	-1.8
4,589,844	+		Pf6N2E2_3949	0.72	-1.2
4,589,844	+		Pf6N2E2_3949	0.72	+0.6
4,589,845	-		Pf6N2E2_3949	0.72	-0.5
4,589,845	-		Pf6N2E2_3949	0.72	-1.3
4,589,845	-		Pf6N2E2_3949	0.72	+0.3
4,589,883	-		Pf6N2E2_3949	0.74	-3.0
4,590,203	+		Pf6N2E2_3949	0.84	-3.5
4,590,204	-		Pf6N2E2_3949	0.84	-0.5
4,590,248	+		Pf6N2E2_3949	0.86	+1.6
4,590,261	-		Pf6N2E2_3949	0.86	-0.6
4,590,395	+				-0.3
4,590,395	+				-3.1
4,590,429	-				+0.3
4,590,440	+				-1.8
4,590,440	+				-0.8
4,590,440	+				-0.9
4,590,440	+				+1.0
4,590,440	+				-1.8
4,590,441	-				-0.4
4,590,441	-				-0.3
4,590,590	+				-0.4
4,590,630	-				-2.3
4,590,630	-				-3.0
4,590,690	+				-0.8
4,590,690	+				-0.6
4,590,690	+				-0.5
4,590,690	+				+0.6
4,590,691	-				-0.2
4,590,691	-				+0.2
4,590,691	-				-0.7
4,590,691	-				-0.6
4,590,691	-				+1.2
4,590,977	+		Pf6N2E2_3950	0.28	-0.0
4,591,264	+		Pf6N2E2_3950	0.54	-0.6
4,591,265	-		Pf6N2E2_3950	0.55	-0.6
4,591,265	-		Pf6N2E2_3950	0.55	-0.3
4,591,265	-		Pf6N2E2_3950	0.55	-1.5
4,591,426	+		Pf6N2E2_3950	0.70	-0.4
4,591,426	+		Pf6N2E2_3950	0.70	+0.0
4,591,426	+		Pf6N2E2_3950	0.70	-0.0
4,591,427	-		Pf6N2E2_3950	0.70	+1.6
4,591,427	-		Pf6N2E2_3950	0.70	-0.4
4,591,427	-		Pf6N2E2_3950	0.70	+0.1
4,591,427	-		Pf6N2E2_3950	0.70	+0.8
4,591,427	-		Pf6N2E2_3950	0.70	+0.0
4,591,427	-		Pf6N2E2_3950	0.70	-1.0
4,591,427	-		Pf6N2E2_3950	0.70	-0.5
4,591,427	-		Pf6N2E2_3950	0.70	-0.4
4,591,427	-		Pf6N2E2_3950	0.70	-0.5
4,591,487	+		Pf6N2E2_3950	0.75	+0.6
4,591,605	-		Pf6N2E2_3950	0.86	-0.1