Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_376 and Pf6N2E2_377 are separated by 299 nucleotides Pf6N2E2_377 and Pf6N2E2_378 are separated by 486 nucleotides Pf6N2E2_378 and Pf6N2E2_379 are separated by 161 nucleotides
Pf6N2E2_376 - Similar to non-heme chloroperoxidase, sll5080 homolog, at 443,495 to 444,448
_376
Pf6N2E2_377 - hypothetical protein, at 444,748 to 444,948
_377
Pf6N2E2_378 - hypothetical protein, at 445,435 to 445,587
_378
Pf6N2E2_379 - hypothetical protein, at 445,749 to 446,549
_379
Position (kb) 444
445 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 443.820 kb on + strand, within Pf6N2E2_376 at 443.820 kb on + strand, within Pf6N2E2_376 at 443.854 kb on - strand, within Pf6N2E2_376 at 444.009 kb on + strand, within Pf6N2E2_376 at 444.009 kb on + strand, within Pf6N2E2_376 at 444.009 kb on + strand, within Pf6N2E2_376 at 444.102 kb on + strand, within Pf6N2E2_376 at 444.285 kb on + strand, within Pf6N2E2_376 at 444.285 kb on + strand, within Pf6N2E2_376 at 444.285 kb on + strand, within Pf6N2E2_376 at 444.285 kb on + strand, within Pf6N2E2_376 at 444.285 kb on + strand, within Pf6N2E2_376 at 444.285 kb on + strand, within Pf6N2E2_376 at 444.286 kb on - strand, within Pf6N2E2_376 at 444.286 kb on - strand, within Pf6N2E2_376 at 444.286 kb on - strand, within Pf6N2E2_376 at 444.286 kb on - strand, within Pf6N2E2_376 at 444.286 kb on - strand, within Pf6N2E2_376 at 444.286 kb on - strand, within Pf6N2E2_376 at 444.286 kb on - strand, within Pf6N2E2_376 at 444.286 kb on - strand, within Pf6N2E2_376 at 444.286 kb on - strand, within Pf6N2E2_376 at 444.288 kb on + strand, within Pf6N2E2_376 at 444.288 kb on + strand, within Pf6N2E2_376 at 444.288 kb on + strand, within Pf6N2E2_376 at 444.289 kb on - strand, within Pf6N2E2_376 at 444.318 kb on + strand, within Pf6N2E2_376 at 444.318 kb on + strand, within Pf6N2E2_376 at 444.318 kb on + strand, within Pf6N2E2_376 at 444.319 kb on - strand, within Pf6N2E2_376 at 444.516 kb on - strand at 444.516 kb on - strand at 444.563 kb on - strand at 444.647 kb on + strand at 444.712 kb on - strand at 444.809 kb on + strand, within Pf6N2E2_377 at 444.809 kb on + strand, within Pf6N2E2_377 at 444.809 kb on + strand, within Pf6N2E2_377 at 444.922 kb on + strand, within Pf6N2E2_377 at 445.204 kb on + strand at 445.205 kb on - strand at 445.238 kb on + strand at 445.270 kb on - strand at 445.270 kb on - strand at 445.423 kb on + strand at 445.423 kb on + strand at 445.424 kb on - strand at 445.424 kb on - strand at 445.424 kb on - strand at 445.424 kb on - strand at 445.424 kb on - strand at 445.716 kb on - strand at 445.750 kb on + strand at 445.750 kb on + strand at 445.750 kb on + strand at 445.751 kb on - strand at 445.751 kb on - strand at 445.753 kb on + strand at 445.754 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 443,820 + Pf6N2E2_376 0.34 +0.9 443,820 + Pf6N2E2_376 0.34 -0.4 443,854 - Pf6N2E2_376 0.38 +0.6 444,009 + Pf6N2E2_376 0.54 +0.1 444,009 + Pf6N2E2_376 0.54 -0.8 444,009 + Pf6N2E2_376 0.54 +1.9 444,102 + Pf6N2E2_376 0.64 -0.7 444,285 + Pf6N2E2_376 0.83 -1.3 444,285 + Pf6N2E2_376 0.83 -1.1 444,285 + Pf6N2E2_376 0.83 -1.2 444,285 + Pf6N2E2_376 0.83 -0.9 444,285 + Pf6N2E2_376 0.83 -0.1 444,285 + Pf6N2E2_376 0.83 +1.7 444,286 - Pf6N2E2_376 0.83 +1.1 444,286 - Pf6N2E2_376 0.83 +0.1 444,286 - Pf6N2E2_376 0.83 -2.9 444,286 - Pf6N2E2_376 0.83 +0.2 444,286 - Pf6N2E2_376 0.83 -0.0 444,286 - Pf6N2E2_376 0.83 +0.8 444,286 - Pf6N2E2_376 0.83 +0.8 444,286 - Pf6N2E2_376 0.83 -0.9 444,286 - Pf6N2E2_376 0.83 -0.3 444,288 + Pf6N2E2_376 0.83 +2.0 444,288 + Pf6N2E2_376 0.83 +0.6 444,288 + Pf6N2E2_376 0.83 +0.7 444,289 - Pf6N2E2_376 0.83 +1.0 444,318 + Pf6N2E2_376 0.86 +0.6 444,318 + Pf6N2E2_376 0.86 +1.7 444,318 + Pf6N2E2_376 0.86 +0.6 444,319 - Pf6N2E2_376 0.86 +0.3 444,516 - -0.8 444,516 - +1.7 444,563 - -0.3 444,647 + -1.3 444,712 - -0.5 444,809 + Pf6N2E2_377 0.30 -0.5 444,809 + Pf6N2E2_377 0.30 -3.6 444,809 + Pf6N2E2_377 0.30 -2.7 444,922 + Pf6N2E2_377 0.87 -2.0 445,204 + +0.3 445,205 - -1.6 445,238 + -0.5 445,270 - -0.9 445,270 - +0.3 445,423 + +0.1 445,423 + +0.7 445,424 - -0.8 445,424 - +0.0 445,424 - +1.2 445,424 - +0.7 445,424 - -2.5 445,716 - -1.7 445,750 + -0.7 445,750 + -1.9 445,750 + -0.3 445,751 - -0.9 445,751 - -0.3 445,753 + -0.3 445,754 - -0.2
Or see this region's nucleotide sequence