Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3427

Experiment: nitrogen source nitrite 0.5mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 0.5mM
3,983,248	+		Pf6N2E2_3426	0.31	-0.7
3,983,248	+		Pf6N2E2_3426	0.31	-0.3
3,983,249	-		Pf6N2E2_3426	0.31	-0.7
3,983,250	+		Pf6N2E2_3426	0.31	+0.4
3,983,629	+		Pf6N2E2_3426	0.70	-0.6
3,983,629	+		Pf6N2E2_3426	0.70	-0.7
3,983,630	-		Pf6N2E2_3426	0.70	-2.1
3,983,692	+		Pf6N2E2_3426	0.77	-0.3
3,983,693	-		Pf6N2E2_3426	0.77	+0.9
3,983,693	-		Pf6N2E2_3426	0.77	-2.2
3,983,693	-		Pf6N2E2_3426	0.77	+0.0
3,983,693	-		Pf6N2E2_3426	0.77	+0.1
3,983,693	-		Pf6N2E2_3426	0.77	-2.4
3,983,695	-		Pf6N2E2_3426	0.77	-0.3
3,983,885	-				+1.6
3,983,886	+				-2.7
3,983,886	+				+0.0
3,983,886	+				-0.8
3,983,886	+				-2.0
3,983,886	+				-0.9
3,983,886	+				-0.1
3,983,886	+				+0.5
3,983,886	+				-0.4
3,983,887	-				-2.9
3,983,887	-				-1.9
3,983,887	-				-2.4
3,983,887	-				-0.9
3,983,887	-				+1.1
3,984,058	+				-2.1
3,984,098	-		Pf6N2E2_3427	0.10	-0.6
3,984,120	-		Pf6N2E2_3427	0.12	-0.9
3,984,126	+		Pf6N2E2_3427	0.12	-0.6
3,984,126	+		Pf6N2E2_3427	0.12	-1.4
3,984,127	-		Pf6N2E2_3427	0.12	-1.4
3,984,127	-		Pf6N2E2_3427	0.12	+1.3
3,984,127	-		Pf6N2E2_3427	0.12	-0.6
3,984,209	+		Pf6N2E2_3427	0.17	+1.6
3,984,209	+		Pf6N2E2_3427	0.17	-0.4
3,984,210	-		Pf6N2E2_3427	0.17	-0.3
3,984,210	-		Pf6N2E2_3427	0.17	+0.3
3,984,210	-		Pf6N2E2_3427	0.17	-0.7
3,984,210	-		Pf6N2E2_3427	0.17	+0.1
3,984,211	+		Pf6N2E2_3427	0.18	-0.7
3,984,211	+		Pf6N2E2_3427	0.18	+2.0
3,984,211	+		Pf6N2E2_3427	0.18	-0.7
3,984,212	-		Pf6N2E2_3427	0.18	+0.2
3,984,212	-		Pf6N2E2_3427	0.18	-1.2
3,984,327	-		Pf6N2E2_3427	0.25	-0.6
3,984,327	-		Pf6N2E2_3427	0.25	-2.2
3,984,476	+		Pf6N2E2_3427	0.35	+1.9
3,984,477	-		Pf6N2E2_3427	0.35	-0.5
3,984,477	-		Pf6N2E2_3427	0.35	-0.0
3,984,477	-		Pf6N2E2_3427	0.35	-0.9
3,984,509	-		Pf6N2E2_3427	0.37	+0.1
3,984,625	+		Pf6N2E2_3427	0.45	+0.2
3,984,625	+		Pf6N2E2_3427	0.45	-2.7
3,984,625	+		Pf6N2E2_3427	0.45	+0.1
3,984,642	+		Pf6N2E2_3427	0.46	-1.5
3,984,642	+		Pf6N2E2_3427	0.46	+0.9
3,984,642	+		Pf6N2E2_3427	0.46	-1.0
3,984,642	+		Pf6N2E2_3427	0.46	+1.6
3,984,643	-		Pf6N2E2_3427	0.46	+0.0
3,984,643	-		Pf6N2E2_3427	0.46	-2.7
3,984,723	+		Pf6N2E2_3427	0.51	+1.6
3,984,723	+		Pf6N2E2_3427	0.51	+0.7
3,984,724	-		Pf6N2E2_3427	0.51	+0.7
3,984,724	-		Pf6N2E2_3427	0.51	-1.0
3,984,724	-		Pf6N2E2_3427	0.51	+1.6
3,984,724	-		Pf6N2E2_3427	0.51	-0.5
3,984,724	-		Pf6N2E2_3427	0.51	+1.6
3,984,799	-		Pf6N2E2_3427	0.56	-1.3
3,984,875	+		Pf6N2E2_3427	0.61	-0.4
3,984,876	-		Pf6N2E2_3427	0.61	+1.1
3,984,881	+		Pf6N2E2_3427	0.62	-1.5
3,984,881	+		Pf6N2E2_3427	0.62	-2.3
3,984,881	+		Pf6N2E2_3427	0.62	-0.7
3,984,882	-		Pf6N2E2_3427	0.62	-0.1
3,984,882	-		Pf6N2E2_3427	0.62	+1.0
3,984,889	+		Pf6N2E2_3427	0.62	-0.4
3,984,890	-		Pf6N2E2_3427	0.62	-0.5
3,984,890	-		Pf6N2E2_3427	0.62	-0.1
3,984,995	+		Pf6N2E2_3427	0.69	-1.4
3,984,995	+		Pf6N2E2_3427	0.69	-1.0
3,984,995	+		Pf6N2E2_3427	0.69	-1.7
3,984,995	+		Pf6N2E2_3427	0.69	+0.3
3,984,996	-		Pf6N2E2_3427	0.69	-2.6
3,984,996	-		Pf6N2E2_3427	0.69	-0.2
3,984,996	-		Pf6N2E2_3427	0.69	-0.4
3,984,996	-		Pf6N2E2_3427	0.69	-0.5
3,984,996	-		Pf6N2E2_3427	0.69	+0.4
3,985,133	+		Pf6N2E2_3427	0.78	-2.0
3,985,151	+		Pf6N2E2_3427	0.80	-0.1
3,985,151	+		Pf6N2E2_3427	0.80	-0.8
3,985,151	+		Pf6N2E2_3427	0.80	-0.2
3,985,152	-		Pf6N2E2_3427	0.80	+0.2
3,985,223	+		Pf6N2E2_3427	0.84	-1.8
3,985,223	+		Pf6N2E2_3427	0.84	-1.2
3,985,223	+		Pf6N2E2_3427	0.84	+0.6
3,985,223	+		Pf6N2E2_3427	0.84	-0.2
3,985,223	+		Pf6N2E2_3427	0.84	-1.4
3,985,224	-		Pf6N2E2_3427	0.84	-0.7
3,985,224	-		Pf6N2E2_3427	0.84	-0.0
3,985,224	-		Pf6N2E2_3427	0.84	-0.1
3,985,224	-		Pf6N2E2_3427	0.84	-1.4
3,985,235	+		Pf6N2E2_3427	0.85	+0.4
3,985,310	+				-0.1
3,985,310	+				-0.1
3,985,310	+				-0.6
3,985,310	+				-0.1
3,985,310	+				+0.6
3,985,310	+				+0.3
3,985,310	+				-0.2
3,985,310	+				-0.2
3,985,311	-				+0.1
3,985,311	-				+0.6
3,985,311	-				-0.6
3,985,311	-				-0.4
3,985,311	-				-1.3
3,985,313	-				+0.8
3,985,361	+				-0.2
3,985,361	+				-0.8
3,985,361	+				+0.6
3,985,364	+				-1.4
3,985,364	+				+0.7
3,985,365	-				-0.1
3,985,365	-				+2.6
3,985,365	-				-1.8
3,985,373	+				+0.6
3,985,381	+				-2.2
3,985,381	+				-0.2
3,985,382	-				-2.2
3,985,382	-				-0.5
3,985,382	-				+0.6
3,985,382	-				-0.8
3,985,488	-				-0.1
3,985,922	+		Pf6N2E2_3428	0.70	+0.7
3,985,922	+		Pf6N2E2_3428	0.70	-1.6
3,985,922	+		Pf6N2E2_3428	0.70	-0.2
3,985,923	-		Pf6N2E2_3428	0.70	+0.3
3,985,950	-		Pf6N2E2_3428	0.74	-2.5
3,986,005	-		Pf6N2E2_3428	0.84	-0.1
3,986,024	-		Pf6N2E2_3428	0.87	-0.4
3,986,024	-		Pf6N2E2_3428	0.87	-2.2
3,986,131	+				-0.6
3,986,131	+				-0.5
3,986,132	-				-0.6
3,986,132	-				-0.0
3,986,160	-				-1.3
3,986,195	+				-0.1
3,986,196	-				+0.6
3,986,198	+				+0.8
3,986,198	+				+0.2
3,986,198	+				+3.9
3,986,198	+				-2.6
3,986,198	+				-2.2
3,986,198	+				+0.9
3,986,198	+				-1.7
3,986,198	+				+0.4
3,986,199	-				+0.6
3,986,199	-				-0.9
3,986,199	-				-0.9
3,986,199	-				+1.5
3,986,199	-				+0.8
3,986,199	-				-1.6
3,986,199	-				-0.5
3,986,199	-				-0.1
3,986,199	-				+0.7
3,986,203	-				-0.0
3,986,203	-				-1.8
3,986,220	+				+1.6
3,986,221	-				+0.3
3,986,221	-				+1.6
3,986,241	+				+0.5
3,986,242	-				-0.6
3,986,271	-				+0.0
3,986,271	-				-0.1
3,986,289	+				+2.2
3,986,289	+				+0.1
3,986,323	+				-0.4
3,986,324	-				-2.0
3,986,324	-				+1.6
3,986,324	-				-0.7
3,986,324	-				-0.8
3,986,327	+				+0.6
3,986,328	-		Pf6N2E2_3429	0.10	-0.1
3,986,328	-		Pf6N2E2_3429	0.10	+0.6
3,986,384	+		Pf6N2E2_3429	0.53	-1.0
3,986,384	+		Pf6N2E2_3429	0.53	-0.1
3,986,385	-		Pf6N2E2_3429	0.54	+0.6
3,986,436	-				+0.4
3,986,447	+				+1.6
3,986,447	+				-0.2
3,986,448	-				-1.8
3,986,448	-				+0.9
3,986,448	-				-2.7
3,986,448	-				+0.1
3,986,448	-				-0.4
3,986,448	-				-0.9