Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS31390

Experiment: trans-aconitic 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS03500 and PFLU_RS31390 are separated by 159 nucleotidesPFLU_RS31390 and PFLU_RS03505 are separated by 43 nucleotides PFLU_RS03500: PFLU_RS03500 - AraC family transcriptional regulator, at 807,935 to 808,744 _RS03500 PFLU_RS31390: PFLU_RS31390 - lysine transporter LysE, at 808,904 to 808,975 _RS31390 PFLU_RS03505: PFLU_RS03505 - D-alanine--D-alanine ligase, at 809,019 to 810,113 _RS03505 Position (kb) 808 809Strain fitness (log2 ratio) -2 -1 0 1 2at 807.978 kb on + strandat 807.978 kb on + strandat 807.979 kb on - strandat 807.979 kb on - strandat 807.979 kb on - strandat 807.979 kb on - strandat 807.979 kb on - strandat 807.979 kb on - strandat 807.979 kb on - strandat 808.104 kb on + strand, within PFLU_RS03500at 808.105 kb on - strand, within PFLU_RS03500at 808.222 kb on + strand, within PFLU_RS03500at 808.222 kb on + strand, within PFLU_RS03500at 808.223 kb on - strand, within PFLU_RS03500at 808.251 kb on + strand, within PFLU_RS03500at 808.252 kb on - strand, within PFLU_RS03500at 808.252 kb on - strand, within PFLU_RS03500at 808.421 kb on - strand, within PFLU_RS03500at 808.421 kb on - strand, within PFLU_RS03500at 808.469 kb on + strand, within PFLU_RS03500at 808.469 kb on + strand, within PFLU_RS03500at 808.469 kb on + strand, within PFLU_RS03500at 808.469 kb on + strand, within PFLU_RS03500at 808.470 kb on - strand, within PFLU_RS03500at 808.470 kb on - strand, within PFLU_RS03500at 808.470 kb on - strand, within PFLU_RS03500at 808.470 kb on - strand, within PFLU_RS03500at 808.470 kb on - strand, within PFLU_RS03500at 808.470 kb on - strand, within PFLU_RS03500at 808.470 kb on - strand, within PFLU_RS03500at 808.473 kb on + strand, within PFLU_RS03500at 808.473 kb on + strand, within PFLU_RS03500at 808.473 kb on + strand, within PFLU_RS03500at 808.473 kb on + strand, within PFLU_RS03500at 808.473 kb on + strand, within PFLU_RS03500at 808.473 kb on + strand, within PFLU_RS03500at 808.474 kb on - strand, within PFLU_RS03500at 808.474 kb on - strand, within PFLU_RS03500at 808.474 kb on - strand, within PFLU_RS03500at 808.474 kb on - strand, within PFLU_RS03500at 808.486 kb on - strand, within PFLU_RS03500at 808.626 kb on + strand, within PFLU_RS03500at 808.626 kb on + strand, within PFLU_RS03500at 808.626 kb on + strand, within PFLU_RS03500at 808.626 kb on + strand, within PFLU_RS03500at 808.626 kb on + strand, within PFLU_RS03500at 808.627 kb on - strand, within PFLU_RS03500at 808.627 kb on - strand, within PFLU_RS03500at 808.627 kb on - strand, within PFLU_RS03500at 808.627 kb on - strand, within PFLU_RS03500at 808.627 kb on - strand, within PFLU_RS03500at 808.627 kb on - strand, within PFLU_RS03500at 808.668 kb on + strandat 808.668 kb on + strandat 808.668 kb on + strandat 808.668 kb on + strandat 808.668 kb on + strandat 808.669 kb on - strandat 808.669 kb on - strandat 808.669 kb on - strandat 808.669 kb on - strandat 808.679 kb on - strandat 808.779 kb on + strandat 808.779 kb on + strandat 808.779 kb on + strandat 808.779 kb on + strandat 808.780 kb on - strandat 808.780 kb on - strandat 808.780 kb on - strandat 808.815 kb on + strandat 808.815 kb on + strandat 808.815 kb on + strandat 808.815 kb on + strandat 808.815 kb on + strandat 808.816 kb on - strandat 808.816 kb on - strandat 808.816 kb on - strandat 808.937 kb on + strand, within PFLU_RS31390at 808.937 kb on + strand, within PFLU_RS31390at 808.937 kb on + strand, within PFLU_RS31390at 808.937 kb on + strand, within PFLU_RS31390at 808.937 kb on + strand, within PFLU_RS31390at 808.937 kb on + strand, within PFLU_RS31390at 808.937 kb on + strand, within PFLU_RS31390at 808.937 kb on + strand, within PFLU_RS31390at 808.937 kb on + strand, within PFLU_RS31390at 808.937 kb on + strand, within PFLU_RS31390at 808.938 kb on - strand, within PFLU_RS31390at 808.938 kb on - strand, within PFLU_RS31390at 808.938 kb on - strand, within PFLU_RS31390at 808.938 kb on - strand, within PFLU_RS31390at 808.938 kb on - strand, within PFLU_RS31390at 808.938 kb on - strand, within PFLU_RS31390at 808.986 kb on + strandat 808.987 kb on - strandat 808.996 kb on + strandat 808.996 kb on + strandat 808.997 kb on - strandat 808.997 kb on - strandat 809.035 kb on + strandat 809.035 kb on + strandat 809.035 kb on + strandat 809.036 kb on - strandat 809.036 kb on - strandat 809.039 kb on + strandat 809.039 kb on + strandat 809.039 kb on + strandat 809.039 kb on + strandat 809.039 kb on + strandat 809.039 kb on + strandat 809.040 kb on - strandat 809.040 kb on - strandat 809.040 kb on - strandat 809.040 kb on - strandat 809.040 kb on - strandat 809.042 kb on + strandat 809.042 kb on + strandat 809.043 kb on - strandat 809.096 kb on + strandat 809.097 kb on - strandat 809.097 kb on - strandat 809.097 kb on - strandat 809.097 kb on - strandat 809.117 kb on + strandat 809.117 kb on + strandat 809.251 kb on + strand, within PFLU_RS03505at 809.251 kb on + strand, within PFLU_RS03505at 809.252 kb on - strand, within PFLU_RS03505at 809.252 kb on - strand, within PFLU_RS03505at 809.252 kb on - strand, within PFLU_RS03505at 809.252 kb on - strand, within PFLU_RS03505at 809.413 kb on + strand, within PFLU_RS03505at 809.413 kb on + strand, within PFLU_RS03505at 809.413 kb on + strand, within PFLU_RS03505at 809.413 kb on + strand, within PFLU_RS03505at 809.413 kb on + strand, within PFLU_RS03505at 809.414 kb on - strand, within PFLU_RS03505at 809.414 kb on - strand, within PFLU_RS03505at 809.414 kb on - strand, within PFLU_RS03505at 809.414 kb on - strand, within PFLU_RS03505at 809.414 kb on - strand, within PFLU_RS03505at 809.493 kb on - strand, within PFLU_RS03505at 809.493 kb on - strand, within PFLU_RS03505at 809.570 kb on + strand, within PFLU_RS03505at 809.597 kb on - strand, within PFLU_RS03505at 809.597 kb on - strand, within PFLU_RS03505at 809.597 kb on - strand, within PFLU_RS03505at 809.606 kb on + strand, within PFLU_RS03505at 809.606 kb on + strand, within PFLU_RS03505at 809.606 kb on + strand, within PFLU_RS03505at 809.607 kb on - strand, within PFLU_RS03505at 809.607 kb on - strand, within PFLU_RS03505at 809.607 kb on - strand, within PFLU_RS03505at 809.629 kb on - strand, within PFLU_RS03505at 809.629 kb on - strand, within PFLU_RS03505at 809.778 kb on + strand, within PFLU_RS03505at 809.779 kb on - strand, within PFLU_RS03505at 809.779 kb on - strand, within PFLU_RS03505at 809.779 kb on - strand, within PFLU_RS03505at 809.784 kb on + strand, within PFLU_RS03505at 809.785 kb on - strand, within PFLU_RS03505at 809.785 kb on - strand, within PFLU_RS03505at 809.785 kb on - strand, within PFLU_RS03505at 809.785 kb on - strand, within PFLU_RS03505at 809.785 kb on - strand, within PFLU_RS03505at 809.796 kb on + strand, within PFLU_RS03505at 809.796 kb on + strand, within PFLU_RS03505at 809.796 kb on + strand, within PFLU_RS03505at 809.796 kb on + strand, within PFLU_RS03505at 809.796 kb on + strand, within PFLU_RS03505at 809.796 kb on + strand, within PFLU_RS03505at 809.796 kb on + strand, within PFLU_RS03505at 809.796 kb on + strand, within PFLU_RS03505at 809.796 kb on + strand, within PFLU_RS03505at 809.796 kb on + strand, within PFLU_RS03505at 809.796 kb on + strand, within PFLU_RS03505at 809.796 kb on + strand, within PFLU_RS03505at 809.796 kb on + strand, within PFLU_RS03505at 809.797 kb on - strand, within PFLU_RS03505at 809.797 kb on - strand, within PFLU_RS03505at 809.797 kb on - strand, within PFLU_RS03505at 809.797 kb on - strand, within PFLU_RS03505at 809.797 kb on - strand, within PFLU_RS03505at 809.797 kb on - strand, within PFLU_RS03505at 809.797 kb on - strand, within PFLU_RS03505at 809.797 kb on - strand, within PFLU_RS03505at 809.797 kb on - strand, within PFLU_RS03505at 809.798 kb on + strand, within PFLU_RS03505at 809.798 kb on + strand, within PFLU_RS03505at 809.799 kb on - strand, within PFLU_RS03505at 809.799 kb on - strand, within PFLU_RS03505at 809.838 kb on - strand, within PFLU_RS03505

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Per-strain Table

Position Strand Gene LocusTag Fraction trans-aconitic 5 mM (C)
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807,978 + -1.4
807,978 + -1.3
807,979 - +0.2
807,979 - +0.4
807,979 - +0.8
807,979 - +0.8
807,979 - +0.9
807,979 - -1.2
807,979 - +1.2
808,104 + PFLU_RS03500 0.21 -0.0
808,105 - PFLU_RS03500 0.21 -0.9
808,222 + PFLU_RS03500 0.35 +0.5
808,222 + PFLU_RS03500 0.35 -0.9
808,223 - PFLU_RS03500 0.36 -0.8
808,251 + PFLU_RS03500 0.39 +0.9
808,252 - PFLU_RS03500 0.39 +0.4
808,252 - PFLU_RS03500 0.39 -0.6
808,421 - PFLU_RS03500 0.60 -1.4
808,421 - PFLU_RS03500 0.60 +0.3
808,469 + PFLU_RS03500 0.66 -1.4
808,469 + PFLU_RS03500 0.66 +0.0
808,469 + PFLU_RS03500 0.66 +0.8
808,469 + PFLU_RS03500 0.66 -0.8
808,470 - PFLU_RS03500 0.66 -0.8
808,470 - PFLU_RS03500 0.66 -0.3
808,470 - PFLU_RS03500 0.66 -0.9
808,470 - PFLU_RS03500 0.66 +0.1
808,470 - PFLU_RS03500 0.66 -0.7
808,470 - PFLU_RS03500 0.66 +0.0
808,470 - PFLU_RS03500 0.66 +0.1
808,473 + PFLU_RS03500 0.66 -0.0
808,473 + PFLU_RS03500 0.66 -0.3
808,473 + PFLU_RS03500 0.66 +0.5
808,473 + PFLU_RS03500 0.66 +0.3
808,473 + PFLU_RS03500 0.66 +0.4
808,473 + PFLU_RS03500 0.66 -0.4
808,474 - PFLU_RS03500 0.67 +0.6
808,474 - PFLU_RS03500 0.67 -1.5
808,474 - PFLU_RS03500 0.67 +0.4
808,474 - PFLU_RS03500 0.67 +0.8
808,486 - PFLU_RS03500 0.68 +0.8
808,626 + PFLU_RS03500 0.85 -0.4
808,626 + PFLU_RS03500 0.85 -0.1
808,626 + PFLU_RS03500 0.85 -0.5
808,626 + PFLU_RS03500 0.85 -0.7
808,626 + PFLU_RS03500 0.85 -1.3
808,627 - PFLU_RS03500 0.85 -0.5
808,627 - PFLU_RS03500 0.85 +1.2
808,627 - PFLU_RS03500 0.85 -0.4
808,627 - PFLU_RS03500 0.85 +0.2
808,627 - PFLU_RS03500 0.85 +0.2
808,627 - PFLU_RS03500 0.85 -1.2
808,668 + -0.1
808,668 + -0.3
808,668 + -0.1
808,668 + +0.9
808,668 + -0.4
808,669 - +0.6
808,669 - +0.8
808,669 - -0.2
808,669 - +1.0
808,679 - -0.9
808,779 + -0.7
808,779 + -0.4
808,779 + -0.8
808,779 + -1.3
808,780 - +0.5
808,780 - -0.2
808,780 - +0.3
808,815 + +0.6
808,815 + -0.7
808,815 + -0.6
808,815 + +0.2
808,815 + +0.9
808,816 - -0.0
808,816 - -0.1
808,816 - -1.1
808,937 + PFLU_RS31390 0.46 +1.0
808,937 + PFLU_RS31390 0.46 +0.1
808,937 + PFLU_RS31390 0.46 +0.7
808,937 + PFLU_RS31390 0.46 -0.1
808,937 + PFLU_RS31390 0.46 -0.3
808,937 + PFLU_RS31390 0.46 -0.3
808,937 + PFLU_RS31390 0.46 -2.2
808,937 + PFLU_RS31390 0.46 +0.0
808,937 + PFLU_RS31390 0.46 -0.2
808,937 + PFLU_RS31390 0.46 +0.2
808,938 - PFLU_RS31390 0.47 +0.3
808,938 - PFLU_RS31390 0.47 +0.5
808,938 - PFLU_RS31390 0.47 -0.1
808,938 - PFLU_RS31390 0.47 +0.9
808,938 - PFLU_RS31390 0.47 +0.1
808,938 - PFLU_RS31390 0.47 +1.2
808,986 + +0.6
808,987 - +1.1
808,996 + +0.3
808,996 + -0.2
808,997 - +0.4
808,997 - +0.3
809,035 + +1.2
809,035 + +0.4
809,035 + +0.1
809,036 - -0.3
809,036 - -0.4
809,039 + +0.4
809,039 + +0.3
809,039 + -1.5
809,039 + +0.5
809,039 + -0.1
809,039 + +0.6
809,040 - -0.9
809,040 - -0.1
809,040 - -0.3
809,040 - -0.2
809,040 - +0.6
809,042 + +0.1
809,042 + -1.4
809,043 - +0.7
809,096 + +0.4
809,097 - +0.8
809,097 - +0.8
809,097 - -0.5
809,097 - -0.7
809,117 + +0.3
809,117 + -0.7
809,251 + PFLU_RS03505 0.21 +1.2
809,251 + PFLU_RS03505 0.21 -1.0
809,252 - PFLU_RS03505 0.21 +1.2
809,252 - PFLU_RS03505 0.21 -1.0
809,252 - PFLU_RS03505 0.21 +0.3
809,252 - PFLU_RS03505 0.21 +2.2
809,413 + PFLU_RS03505 0.36 +0.2
809,413 + PFLU_RS03505 0.36 +1.2
809,413 + PFLU_RS03505 0.36 +2.5
809,413 + PFLU_RS03505 0.36 +0.1
809,413 + PFLU_RS03505 0.36 -1.4
809,414 - PFLU_RS03505 0.36 -0.9
809,414 - PFLU_RS03505 0.36 +0.3
809,414 - PFLU_RS03505 0.36 +0.9
809,414 - PFLU_RS03505 0.36 -0.4
809,414 - PFLU_RS03505 0.36 -0.5
809,493 - PFLU_RS03505 0.43 +0.3
809,493 - PFLU_RS03505 0.43 +2.2
809,570 + PFLU_RS03505 0.50 -0.4
809,597 - PFLU_RS03505 0.53 +0.1
809,597 - PFLU_RS03505 0.53 -1.3
809,597 - PFLU_RS03505 0.53 +0.4
809,606 + PFLU_RS03505 0.54 -0.0
809,606 + PFLU_RS03505 0.54 -0.6
809,606 + PFLU_RS03505 0.54 -0.4
809,607 - PFLU_RS03505 0.54 -0.5
809,607 - PFLU_RS03505 0.54 -0.8
809,607 - PFLU_RS03505 0.54 -0.0
809,629 - PFLU_RS03505 0.56 -1.1
809,629 - PFLU_RS03505 0.56 -1.2
809,778 + PFLU_RS03505 0.69 -0.6
809,779 - PFLU_RS03505 0.69 -0.6
809,779 - PFLU_RS03505 0.69 +1.8
809,779 - PFLU_RS03505 0.69 -1.8
809,784 + PFLU_RS03505 0.70 -0.2
809,785 - PFLU_RS03505 0.70 +0.8
809,785 - PFLU_RS03505 0.70 +1.0
809,785 - PFLU_RS03505 0.70 -0.6
809,785 - PFLU_RS03505 0.70 +1.4
809,785 - PFLU_RS03505 0.70 -0.1
809,796 + PFLU_RS03505 0.71 -0.4
809,796 + PFLU_RS03505 0.71 -1.4
809,796 + PFLU_RS03505 0.71 +0.5
809,796 + PFLU_RS03505 0.71 -0.4
809,796 + PFLU_RS03505 0.71 +0.3
809,796 + PFLU_RS03505 0.71 +0.0
809,796 + PFLU_RS03505 0.71 -0.8
809,796 + PFLU_RS03505 0.71 -0.2
809,796 + PFLU_RS03505 0.71 +0.1
809,796 + PFLU_RS03505 0.71 +0.1
809,796 + PFLU_RS03505 0.71 +0.8
809,796 + PFLU_RS03505 0.71 +0.2
809,796 + PFLU_RS03505 0.71 +0.3
809,797 - PFLU_RS03505 0.71 -0.7
809,797 - PFLU_RS03505 0.71 +0.6
809,797 - PFLU_RS03505 0.71 -0.4
809,797 - PFLU_RS03505 0.71 +0.2
809,797 - PFLU_RS03505 0.71 +0.5
809,797 - PFLU_RS03505 0.71 +0.0
809,797 - PFLU_RS03505 0.71 +0.4
809,797 - PFLU_RS03505 0.71 +0.3
809,797 - PFLU_RS03505 0.71 -0.1
809,798 + PFLU_RS03505 0.71 +2.0
809,798 + PFLU_RS03505 0.71 +0.6
809,799 - PFLU_RS03505 0.71 +0.2
809,799 - PFLU_RS03505 0.71 -0.0
809,838 - PFLU_RS03505 0.75 +1.2

Or see this region's nucleotide sequence