Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16530

Experiment: trans-aconitic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	trans-aconitic 5 mM (C)
3,748,320	+		PFLU_RS16515	0.78	+0.9
3,748,320	+		PFLU_RS16515	0.78	+0.6
3,748,367	-				+0.2
3,748,397	-				-0.6
3,748,483	+		PFLU_RS16520	0.13	+1.2
3,748,483	+		PFLU_RS16520	0.13	-1.5
3,748,483	+		PFLU_RS16520	0.13	-0.6
3,748,483	+		PFLU_RS16520	0.13	-1.4
3,748,484	-		PFLU_RS16520	0.13	-0.2
3,748,484	-		PFLU_RS16520	0.13	-1.1
3,748,484	-		PFLU_RS16520	0.13	-1.2
3,748,484	-		PFLU_RS16520	0.13	+1.7
3,748,484	-		PFLU_RS16520	0.13	-0.6
3,748,515	+		PFLU_RS16520	0.24	-0.4
3,748,516	-		PFLU_RS16520	0.24	+0.1
3,748,540	+		PFLU_RS16520	0.33	+0.5
3,748,540	+		PFLU_RS16520	0.33	-0.1
3,748,665	+		PFLU_RS16520	0.76	+0.4
3,748,665	+		PFLU_RS16520	0.76	+0.3
3,748,666	-		PFLU_RS16520	0.76	-1.3
3,748,670	-		PFLU_RS16520	0.78	-1.1
3,748,711	+				-0.6
3,748,711	+				+1.0
3,748,712	-				-0.3
3,748,712	-				-0.8
3,748,712	-				+1.6
3,748,712	-				-1.3
3,748,784	+				-1.2
3,748,784	+				-0.3
3,748,784	+				-1.2
3,748,785	-				-0.3
3,748,785	-				-1.1
3,748,785	-				-1.6
3,748,821	+				+0.9
3,748,821	+				-2.1
3,748,821	+				+0.7
3,748,821	+				-1.5
3,748,822	-				-0.1
3,748,822	-				+0.5
3,748,822	-				-1.6
3,748,822	-				+0.4
3,748,822	-				-0.6
3,748,834	-				+0.3
3,748,834	-				+0.4
3,748,834	-				+0.9
3,748,857	-		PFLU_RS16525	0.11	+1.9
3,749,002	+		PFLU_RS16525	0.45	+1.3
3,749,003	-		PFLU_RS16525	0.45	-0.1
3,749,205	+				+0.9
3,749,205	+				+0.2
3,749,205	+				-1.5
3,749,205	+				-1.1
3,749,206	-				-0.3
3,749,206	-				+0.5
3,749,206	-				-0.1
3,749,206	-				+0.6
3,749,265	+				-1.1
3,749,376	+		PFLU_RS16530	0.41	+0.4
3,749,426	+		PFLU_RS16530	0.66	+0.4
3,749,426	+		PFLU_RS16530	0.66	-0.9
3,749,427	-		PFLU_RS16530	0.67	-0.4
3,749,436	+		PFLU_RS16530	0.71	-1.5
3,749,437	-		PFLU_RS16530	0.72	-1.4
3,749,437	-		PFLU_RS16530	0.72	-2.4
3,749,458	-		PFLU_RS16530	0.83	-0.5
3,749,458	-		PFLU_RS16530	0.83	+0.7
3,749,463	+		PFLU_RS16530	0.85	+1.4
3,749,463	+		PFLU_RS16530	0.85	-0.3
3,749,464	-		PFLU_RS16530	0.86	-0.2
3,749,507	+				+0.5
3,749,507	+				+0.9
3,749,507	+				+0.9
3,749,507	+				+0.7
3,749,508	-				+0.9
3,749,508	-				-0.4
3,749,508	-				-0.6
3,749,566	-				+0.1
3,749,566	-				-0.6
3,749,607	+				-0.2
3,749,681	+				-0.2
3,749,681	+				+0.6
3,749,681	+				-0.1
3,749,717	+				-0.9
3,749,768	+				+1.2
3,749,788	+				+0.7
3,749,827	+				-0.1
3,750,048	-		PFLU_RS16535	0.12	+0.5
3,750,048	-		PFLU_RS16535	0.12	-1.3
3,750,048	-		PFLU_RS16535	0.12	+0.9
3,750,067	+		PFLU_RS16535	0.13	-0.5
3,750,067	+		PFLU_RS16535	0.13	-0.8
3,750,067	+		PFLU_RS16535	0.13	+0.9
3,750,068	-		PFLU_RS16535	0.13	+0.3
3,750,112	+		PFLU_RS16535	0.16	+0.1
3,750,116	+		PFLU_RS16535	0.16	-0.5
3,750,176	-		PFLU_RS16535	0.20	-1.2
3,750,194	+		PFLU_RS16535	0.21	+1.7
3,750,471	-		PFLU_RS16535	0.37	-0.9