Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3987

Experiment: nitrogen source nitrite 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3986 and Pf6N2E2_3987 overlap by 4 nucleotidesPf6N2E2_3987 and Pf6N2E2_3988 are separated by 10 nucleotides Pf6N2E2_3986 - PROBABLE REMNANT OF A TRANSPOSASE GENE PROTEIN, at 4,652,676 to 4,653,452 _3986 Pf6N2E2_3987 - FIG00953743: hypothetical protein, at 4,653,449 to 4,654,381 _3987 Pf6N2E2_3988 - Non-ribosomal peptide synthetase modules and related proteins, at 4,654,392 to 4,657,811 _3988 Position (kb) 4653 4654 4655Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4652.472 kb on + strandat 4652.698 kb on + strandat 4652.699 kb on - strandat 4652.908 kb on + strand, within Pf6N2E2_3986at 4652.968 kb on - strand, within Pf6N2E2_3986at 4653.250 kb on - strand, within Pf6N2E2_3986at 4653.252 kb on + strand, within Pf6N2E2_3986at 4653.252 kb on + strand, within Pf6N2E2_3986at 4653.253 kb on - strand, within Pf6N2E2_3986at 4653.253 kb on - strand, within Pf6N2E2_3986at 4653.253 kb on - strand, within Pf6N2E2_3986at 4653.253 kb on - strand, within Pf6N2E2_3986at 4653.253 kb on - strand, within Pf6N2E2_3986at 4653.253 kb on - strand, within Pf6N2E2_3986at 4653.355 kb on + strand, within Pf6N2E2_3986at 4653.355 kb on + strand, within Pf6N2E2_3986at 4653.465 kb on - strandat 4653.465 kb on - strandat 4653.641 kb on + strand, within Pf6N2E2_3987at 4653.641 kb on + strand, within Pf6N2E2_3987at 4653.642 kb on - strand, within Pf6N2E2_3987at 4653.642 kb on - strand, within Pf6N2E2_3987at 4653.642 kb on - strand, within Pf6N2E2_3987at 4653.642 kb on - strand, within Pf6N2E2_3987at 4653.642 kb on - strand, within Pf6N2E2_3987at 4653.782 kb on + strand, within Pf6N2E2_3987at 4653.783 kb on - strand, within Pf6N2E2_3987at 4653.783 kb on - strand, within Pf6N2E2_3987at 4654.089 kb on - strand, within Pf6N2E2_3987at 4654.089 kb on - strand, within Pf6N2E2_3987at 4654.089 kb on - strand, within Pf6N2E2_3987at 4654.157 kb on + strand, within Pf6N2E2_3987at 4654.347 kb on + strandat 4654.368 kb on - strandat 4654.536 kb on - strandat 4654.610 kb on - strandat 4654.630 kb on + strandat 4654.998 kb on + strand, within Pf6N2E2_3988at 4654.999 kb on - strand, within Pf6N2E2_3988at 4655.113 kb on + strand, within Pf6N2E2_3988at 4655.113 kb on + strand, within Pf6N2E2_3988at 4655.113 kb on + strand, within Pf6N2E2_3988at 4655.113 kb on + strand, within Pf6N2E2_3988at 4655.113 kb on + strand, within Pf6N2E2_3988at 4655.113 kb on + strand, within Pf6N2E2_3988at 4655.113 kb on + strand, within Pf6N2E2_3988at 4655.113 kb on + strand, within Pf6N2E2_3988at 4655.113 kb on + strand, within Pf6N2E2_3988at 4655.114 kb on - strand, within Pf6N2E2_3988at 4655.114 kb on - strand, within Pf6N2E2_3988at 4655.114 kb on - strand, within Pf6N2E2_3988at 4655.114 kb on - strand, within Pf6N2E2_3988at 4655.114 kb on - strand, within Pf6N2E2_3988at 4655.114 kb on - strand, within Pf6N2E2_3988at 4655.114 kb on - strand, within Pf6N2E2_3988at 4655.114 kb on - strand, within Pf6N2E2_3988at 4655.114 kb on - strand, within Pf6N2E2_3988at 4655.114 kb on - strand, within Pf6N2E2_3988at 4655.114 kb on - strand, within Pf6N2E2_3988at 4655.114 kb on - strand, within Pf6N2E2_3988at 4655.114 kb on - strand, within Pf6N2E2_3988at 4655.115 kb on + strand, within Pf6N2E2_3988at 4655.116 kb on - strand, within Pf6N2E2_3988at 4655.116 kb on - strand, within Pf6N2E2_3988at 4655.155 kb on - strand, within Pf6N2E2_3988at 4655.367 kb on + strand, within Pf6N2E2_3988at 4655.367 kb on + strand, within Pf6N2E2_3988at 4655.367 kb on + strand, within Pf6N2E2_3988at 4655.367 kb on + strand, within Pf6N2E2_3988at 4655.367 kb on + strand, within Pf6N2E2_3988at 4655.368 kb on - strand, within Pf6N2E2_3988at 4655.368 kb on - strand, within Pf6N2E2_3988at 4655.368 kb on - strand, within Pf6N2E2_3988

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 1mM
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4,652,472 + -2.1
4,652,698 + +0.8
4,652,699 - +2.4
4,652,908 + Pf6N2E2_3986 0.30 -2.4
4,652,968 - Pf6N2E2_3986 0.38 -0.3
4,653,250 - Pf6N2E2_3986 0.74 -1.3
4,653,252 + Pf6N2E2_3986 0.74 +1.8
4,653,252 + Pf6N2E2_3986 0.74 -0.1
4,653,253 - Pf6N2E2_3986 0.74 -0.1
4,653,253 - Pf6N2E2_3986 0.74 -0.5
4,653,253 - Pf6N2E2_3986 0.74 +0.8
4,653,253 - Pf6N2E2_3986 0.74 +0.2
4,653,253 - Pf6N2E2_3986 0.74 -0.2
4,653,253 - Pf6N2E2_3986 0.74 +0.5
4,653,355 + Pf6N2E2_3986 0.87 +0.8
4,653,355 + Pf6N2E2_3986 0.87 +0.5
4,653,465 - -0.1
4,653,465 - +0.1
4,653,641 + Pf6N2E2_3987 0.21 +1.5
4,653,641 + Pf6N2E2_3987 0.21 -0.3
4,653,642 - Pf6N2E2_3987 0.21 -0.8
4,653,642 - Pf6N2E2_3987 0.21 +0.4
4,653,642 - Pf6N2E2_3987 0.21 +0.4
4,653,642 - Pf6N2E2_3987 0.21 +0.7
4,653,642 - Pf6N2E2_3987 0.21 -0.3
4,653,782 + Pf6N2E2_3987 0.36 -2.6
4,653,783 - Pf6N2E2_3987 0.36 -0.4
4,653,783 - Pf6N2E2_3987 0.36 -2.3
4,654,089 - Pf6N2E2_3987 0.69 +0.5
4,654,089 - Pf6N2E2_3987 0.69 -0.4
4,654,089 - Pf6N2E2_3987 0.69 -0.3
4,654,157 + Pf6N2E2_3987 0.76 -0.8
4,654,347 + +1.0
4,654,368 - -1.5
4,654,536 - +0.7
4,654,610 - -0.2
4,654,630 + -0.4
4,654,998 + Pf6N2E2_3988 0.18 -0.1
4,654,999 - Pf6N2E2_3988 0.18 +0.1
4,655,113 + Pf6N2E2_3988 0.21 -1.6
4,655,113 + Pf6N2E2_3988 0.21 +0.5
4,655,113 + Pf6N2E2_3988 0.21 +3.3
4,655,113 + Pf6N2E2_3988 0.21 -0.2
4,655,113 + Pf6N2E2_3988 0.21 +1.2
4,655,113 + Pf6N2E2_3988 0.21 -0.4
4,655,113 + Pf6N2E2_3988 0.21 +0.5
4,655,113 + Pf6N2E2_3988 0.21 -0.5
4,655,113 + Pf6N2E2_3988 0.21 +0.9
4,655,114 - Pf6N2E2_3988 0.21 -2.6
4,655,114 - Pf6N2E2_3988 0.21 +1.5
4,655,114 - Pf6N2E2_3988 0.21 -0.6
4,655,114 - Pf6N2E2_3988 0.21 +0.2
4,655,114 - Pf6N2E2_3988 0.21 +0.1
4,655,114 - Pf6N2E2_3988 0.21 +0.3
4,655,114 - Pf6N2E2_3988 0.21 +1.0
4,655,114 - Pf6N2E2_3988 0.21 -1.8
4,655,114 - Pf6N2E2_3988 0.21 +0.0
4,655,114 - Pf6N2E2_3988 0.21 -0.0
4,655,114 - Pf6N2E2_3988 0.21 -1.1
4,655,114 - Pf6N2E2_3988 0.21 -0.5
4,655,114 - Pf6N2E2_3988 0.21 +0.1
4,655,115 + Pf6N2E2_3988 0.21 +0.4
4,655,116 - Pf6N2E2_3988 0.21 +0.2
4,655,116 - Pf6N2E2_3988 0.21 +1.5
4,655,155 - Pf6N2E2_3988 0.22 +1.5
4,655,367 + Pf6N2E2_3988 0.29 -0.5
4,655,367 + Pf6N2E2_3988 0.29 -3.3
4,655,367 + Pf6N2E2_3988 0.29 -0.2
4,655,367 + Pf6N2E2_3988 0.29 +0.0
4,655,367 + Pf6N2E2_3988 0.29 +0.3
4,655,368 - Pf6N2E2_3988 0.29 -0.4
4,655,368 - Pf6N2E2_3988 0.29 +1.5
4,655,368 - Pf6N2E2_3988 0.29 -1.1

Or see this region's nucleotide sequence