Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS29315

Experiment: trans-aconitic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	trans-aconitic 5 mM (C)
6,509,054	-				-1.5
6,509,420	+				+0.3
6,509,420	+				-0.3
6,509,421	-				-1.0
6,509,421	-				-0.1
6,509,442	-				-0.6
6,509,442	-				+0.3
6,509,442	-				-0.1
6,509,442	-				+0.3
6,509,442	-				-0.1
6,509,442	-				-0.9
6,509,505	-				+0.1
6,509,571	+				+1.3
6,509,571	+				-0.1
6,509,571	+				+1.3
6,509,627	+				-2.3
6,509,627	+				+3.6
6,509,627	+				-1.5
6,509,627	+				+0.2
6,509,627	+				-1.0
6,509,627	+				-0.3
6,509,627	+				-0.9
6,509,627	+				-0.2
6,509,627	+				+0.1
6,509,627	+				-1.2
6,509,627	+				+0.5
6,509,627	+				+1.1
6,509,628	-				-0.1
6,509,628	-				-0.1
6,509,628	-				+0.5
6,509,628	-				-0.9
6,509,628	-				-0.3
6,509,628	-				-0.0
6,509,731	+				+0.3
6,509,731	+				+0.5
6,509,731	+				+0.3
6,509,731	+				-0.4
6,509,731	+				-0.2
6,509,731	+				+1.1
6,509,732	-				+1.0
6,509,732	-				-0.3
6,509,732	-				-0.9
6,509,732	-				-0.2
6,509,733	+				+0.3
6,509,733	+				-0.9
6,509,733	+				-0.8
6,509,733	+				-0.9
6,509,733	+				+0.2
6,509,733	+				-1.3
6,509,733	+				-1.7
6,509,733	+				+0.3
6,509,733	+				+1.1
6,509,733	+				-0.0
6,509,733	+				-1.2
6,509,733	+				+0.3
6,509,733	+				-1.3
6,509,733	+				-0.1
6,509,733	+				-1.8
6,509,734	-				-1.3
6,509,734	-				+0.4
6,509,734	-				+1.3
6,509,734	-				-0.4
6,509,734	-				+0.3
6,509,734	-				-0.4
6,509,734	-				+0.0
6,509,734	-				-0.3
6,509,734	-				+0.4
6,509,734	-				-0.4
6,509,734	-				-0.2
6,509,734	-				-0.6
6,509,747	+				+0.1
6,509,747	+				+1.5
6,509,747	+				-1.8
6,509,747	+				-0.3
6,509,747	+				+0.1
6,509,747	+				+2.3
6,509,747	+				-0.7
6,509,747	+				+0.3
6,509,747	+				+1.0
6,509,747	+				+0.1
6,509,747	+				-2.5
6,509,748	-				-0.3
6,509,748	-				+0.6
6,509,748	-				+0.1
6,509,748	-				-0.4
6,509,748	-				-1.0
6,509,748	-				-0.9
6,509,748	-				-0.0
6,509,748	-				-0.4
6,509,748	-				+0.3
6,509,748	-				-0.2
6,509,776	-				-0.4
6,509,776	-				+0.1
6,510,003	+		PFLU_RS29310	0.84	+1.3
6,510,003	+		PFLU_RS29310	0.84	+0.6
6,510,042	-				+0.4
6,510,091	-				+0.2
6,510,140	+		PFLU_RS29315	0.19	-0.9
6,510,141	-		PFLU_RS29315	0.20	-0.4
6,510,356	+		PFLU_RS29315	0.66	-0.0
6,510,356	+		PFLU_RS29315	0.66	-0.2
6,510,357	-		PFLU_RS29315	0.66	-0.7
6,510,357	-		PFLU_RS29315	0.66	-0.4
6,510,357	-		PFLU_RS29315	0.66	-1.3
6,510,357	-		PFLU_RS29315	0.66	-0.5
6,510,357	-		PFLU_RS29315	0.66	+0.3
6,510,357	-		PFLU_RS29315	0.66	-2.0
6,510,478	+				-1.2
6,510,478	+				+0.3
6,510,478	+				-0.2
6,510,478	+				+1.3
6,510,479	-				+0.5
6,510,479	-				+0.3
6,510,479	-				-0.0
6,510,490	+				+1.3
6,510,490	+				-2.0
6,510,490	+				-0.3
6,510,491	-				-0.1
6,510,491	-				-0.2
6,510,491	-				+0.4
6,510,514	+				-0.7
6,510,514	+				+1.4
6,510,514	+				-0.3
6,510,514	+				+0.6
6,510,514	+				+0.8
6,510,514	+				-0.3
6,510,514	+				-1.0
6,510,514	+				-0.0
6,510,514	+				+0.4
6,510,514	+				+0.8
6,510,514	+				-0.0
6,510,514	+				-0.5
6,510,514	+				-0.6
6,510,515	-				-0.0
6,510,515	-				-0.9
6,510,515	-				-0.6
6,510,515	-				-2.9
6,510,515	-				-0.2
6,510,515	-				-1.9
6,510,515	-				+0.5
6,510,515	-				+1.4
6,510,515	-				-0.1
6,510,515	-				-1.2
6,510,515	-				+0.7
6,510,515	-				+1.3
6,510,515	-				-0.0
6,510,515	-				-0.3
6,510,515	-				+0.1
6,510,515	-				-0.4
6,510,515	-				+1.5
6,510,515	-				+0.1
6,510,515	-				-1.3
6,510,523	+				-0.8
6,510,523	+				+0.5
6,510,524	-				+1.9
6,510,524	-				+1.0
6,510,524	-				-0.5
6,510,559	+				+1.5
6,510,559	+				+0.9
6,510,559	+				-0.4
6,510,559	+				+0.4
6,510,559	+				+1.7
6,510,559	+				-0.6
6,510,560	-				+1.1
6,510,560	-				-0.7
6,510,560	-				+2.2
6,510,560	-				-1.7
6,510,560	-				-0.4
6,510,560	-				+0.8
6,510,560	-				+0.0
6,510,768	+		PFLU_RS29320	0.11	+0.4
6,510,768	+		PFLU_RS29320	0.11	-0.9
6,510,768	+		PFLU_RS29320	0.11	+0.8
6,510,769	-		PFLU_RS29320	0.11	-1.0
6,510,769	-		PFLU_RS29320	0.11	-0.4
6,510,769	-		PFLU_RS29320	0.11	+0.8
6,510,784	+		PFLU_RS29320	0.12	-0.6
6,511,009	-		PFLU_RS29320	0.27	-0.7
6,511,016	+		PFLU_RS29320	0.27	+0.5
6,511,016	+		PFLU_RS29320	0.27	-1.1
6,511,016	+		PFLU_RS29320	0.27	-1.1
6,511,017	-		PFLU_RS29320	0.27	+0.1
6,511,017	-		PFLU_RS29320	0.27	-0.1
6,511,132	+		PFLU_RS29320	0.35	-2.3
6,511,132	+		PFLU_RS29320	0.35	+0.8
6,511,132	+		PFLU_RS29320	0.35	-0.1
6,511,132	+		PFLU_RS29320	0.35	+2.5
6,511,132	+		PFLU_RS29320	0.35	+1.0
6,511,132	+		PFLU_RS29320	0.35	+1.1
6,511,132	+		PFLU_RS29320	0.35	+0.6
6,511,132	+		PFLU_RS29320	0.35	-0.5
6,511,132	+		PFLU_RS29320	0.35	+1.0
6,511,132	+		PFLU_RS29320	0.35	+1.7
6,511,132	+		PFLU_RS29320	0.35	-1.3
6,511,132	+		PFLU_RS29320	0.35	-0.1
6,511,132	+		PFLU_RS29320	0.35	+0.3
6,511,132	+		PFLU_RS29320	0.35	-0.0
6,511,133	-		PFLU_RS29320	0.35	+0.5
6,511,133	-		PFLU_RS29320	0.35	+0.4
6,511,133	-		PFLU_RS29320	0.35	-0.1
6,511,133	-		PFLU_RS29320	0.35	+0.6
6,511,133	-		PFLU_RS29320	0.35	+0.9
6,511,133	-		PFLU_RS29320	0.35	-0.1
6,511,133	-		PFLU_RS29320	0.35	+0.4
6,511,133	-		PFLU_RS29320	0.35	-2.4
6,511,133	-		PFLU_RS29320	0.35	+0.8
6,511,133	-		PFLU_RS29320	0.35	-0.2
6,511,133	-		PFLU_RS29320	0.35	+0.1
6,511,133	-		PFLU_RS29320	0.35	+1.9
6,511,134	+		PFLU_RS29320	0.35	+1.3
6,511,134	+		PFLU_RS29320	0.35	-0.6
6,511,134	+		PFLU_RS29320	0.35	-1.0
6,511,134	+		PFLU_RS29320	0.35	-0.0
6,511,134	+		PFLU_RS29320	0.35	+0.5
6,511,135	-		PFLU_RS29320	0.35	-1.4
6,511,135	-		PFLU_RS29320	0.35	-1.0
6,511,135	-		PFLU_RS29320	0.35	-1.1
6,511,135	-		PFLU_RS29320	0.35	-0.6
6,511,135	-		PFLU_RS29320	0.35	-1.0
6,511,153	+		PFLU_RS29320	0.36	+0.4
6,511,153	+		PFLU_RS29320	0.36	+0.6
6,511,153	+		PFLU_RS29320	0.36	-1.3
6,511,153	+		PFLU_RS29320	0.36	-0.1
6,511,153	+		PFLU_RS29320	0.36	+0.2
6,511,153	+		PFLU_RS29320	0.36	+0.9
6,511,153	+		PFLU_RS29320	0.36	-0.6
6,511,153	+		PFLU_RS29320	0.36	-1.3
6,511,153	+		PFLU_RS29320	0.36	+0.4
6,511,154	-		PFLU_RS29320	0.37	+2.9
6,511,154	-		PFLU_RS29320	0.37	+0.0
6,511,154	-		PFLU_RS29320	0.37	-1.8
6,511,154	-		PFLU_RS29320	0.37	+0.6
6,511,154	-		PFLU_RS29320	0.37	+0.5
6,511,154	-		PFLU_RS29320	0.37	-1.3
6,511,154	-		PFLU_RS29320	0.37	+1.0
6,511,154	-		PFLU_RS29320	0.37	+0.4
6,511,154	-		PFLU_RS29320	0.37	-1.7
6,511,161	+		PFLU_RS29320	0.37	+0.3
6,511,161	+		PFLU_RS29320	0.37	-1.1
6,511,161	+		PFLU_RS29320	0.37	+0.6
6,511,162	-		PFLU_RS29320	0.37	-0.3
6,511,162	-		PFLU_RS29320	0.37	+0.4
6,511,162	-		PFLU_RS29320	0.37	-0.3
6,511,162	-		PFLU_RS29320	0.37	+0.5
6,511,242	+		PFLU_RS29320	0.42	+0.3
6,511,242	+		PFLU_RS29320	0.42	+1.1
6,511,242	+		PFLU_RS29320	0.42	-1.5
6,511,242	+		PFLU_RS29320	0.42	+0.6
6,511,242	+		PFLU_RS29320	0.42	+0.3
6,511,242	+		PFLU_RS29320	0.42	-0.4
6,511,242	+		PFLU_RS29320	0.42	-0.1
6,511,242	+		PFLU_RS29320	0.42	+0.2
6,511,242	+		PFLU_RS29320	0.42	+0.5
6,511,242	+		PFLU_RS29320	0.42	+0.3
6,511,242	+		PFLU_RS29320	0.42	+0.3
6,511,242	+		PFLU_RS29320	0.42	+0.2
6,511,242	+		PFLU_RS29320	0.42	-0.3
6,511,242	+		PFLU_RS29320	0.42	+0.4
6,511,242	+		PFLU_RS29320	0.42	+0.2
6,511,243	-		PFLU_RS29320	0.42	-0.3
6,511,243	-		PFLU_RS29320	0.42	+1.3
6,511,243	-		PFLU_RS29320	0.42	-1.3
6,511,243	-		PFLU_RS29320	0.42	-2.0
6,511,243	-		PFLU_RS29320	0.42	-1.7
6,511,243	-		PFLU_RS29320	0.42	+0.2
6,511,243	-		PFLU_RS29320	0.42	-0.4
6,511,243	-		PFLU_RS29320	0.42	+0.6
6,511,243	-		PFLU_RS29320	0.42	+0.7