Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14940

Experiment: trans-aconitic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	trans-aconitic 5 mM (C)
3,342,231	+		PFLU_RS14935	0.30	-1.4
3,342,231	+		PFLU_RS14935	0.30	-1.4
3,342,231	+		PFLU_RS14935	0.30	+0.9
3,342,231	+		PFLU_RS14935	0.30	-0.7
3,342,232	-		PFLU_RS14935	0.30	-2.3
3,342,232	-		PFLU_RS14935	0.30	-1.4
3,342,232	-		PFLU_RS14935	0.30	-2.4
3,342,241	+		PFLU_RS14935	0.31	-0.4
3,342,261	+		PFLU_RS14935	0.33	-1.4
3,342,275	+		PFLU_RS14935	0.34	-0.1
3,342,275	+		PFLU_RS14935	0.34	-0.7
3,342,474	+		PFLU_RS14935	0.48	-1.9
3,342,474	+		PFLU_RS14935	0.48	-1.1
3,342,474	+		PFLU_RS14935	0.48	-2.1
3,342,474	+		PFLU_RS14935	0.48	-0.1
3,342,474	+		PFLU_RS14935	0.48	-1.7
3,342,474	+		PFLU_RS14935	0.48	-2.0
3,342,474	+		PFLU_RS14935	0.48	-2.1
3,342,475	-		PFLU_RS14935	0.49	-1.8
3,342,475	-		PFLU_RS14935	0.49	-0.5
3,342,475	-		PFLU_RS14935	0.49	-1.4
3,342,514	+		PFLU_RS14935	0.52	-2.7
3,342,515	-		PFLU_RS14935	0.52	-2.2
3,342,517	+		PFLU_RS14935	0.52	-3.0
3,342,517	+		PFLU_RS14935	0.52	+0.9
3,342,517	+		PFLU_RS14935	0.52	-0.7
3,342,518	-		PFLU_RS14935	0.52	-1.4
3,342,582	+		PFLU_RS14935	0.57	-0.1
3,342,583	-		PFLU_RS14935	0.57	-0.7
3,342,583	-		PFLU_RS14935	0.57	-1.1
3,342,583	-		PFLU_RS14935	0.57	-1.2
3,342,623	+		PFLU_RS14935	0.60	-0.7
3,342,624	-		PFLU_RS14935	0.60	-1.3
3,342,624	-		PFLU_RS14935	0.60	-1.7
3,342,654	-		PFLU_RS14935	0.62	-0.9
3,342,795	+		PFLU_RS14935	0.73	-1.2
3,342,856	+		PFLU_RS14935	0.77	-2.1
3,342,856	+		PFLU_RS14935	0.77	-1.1
3,342,857	-		PFLU_RS14935	0.77	-0.7
3,342,864	+		PFLU_RS14935	0.78	-2.2
3,342,865	-		PFLU_RS14935	0.78	-1.1
3,342,865	-		PFLU_RS14935	0.78	-1.1
3,342,865	-		PFLU_RS14935	0.78	-1.9
3,342,875	+		PFLU_RS14935	0.79	-1.4
3,342,875	+		PFLU_RS14935	0.79	-1.6
3,342,876	-		PFLU_RS14935	0.79	+0.6
3,342,876	-		PFLU_RS14935	0.79	-0.9
3,343,052	-				+2.5
3,343,125	+				-0.4
3,343,125	+				-0.1
3,343,126	-				-1.4
3,343,183	+				-2.5
3,343,183	+				-1.4
3,343,195	+				-3.1
3,343,195	+				-2.7
3,343,266	+				-1.6
3,343,266	+				-1.1
3,343,266	+				-1.1
3,343,266	+				-1.7
3,343,266	+				-0.7
3,343,266	+				-0.6
3,343,266	+				-0.1
3,343,267	-				-1.4
3,343,267	-				-2.9
3,343,267	-				-2.8
3,343,267	-				-3.3
3,343,267	-				-1.8
3,343,267	-				-2.2
3,343,267	-				-0.1
3,343,267	-				-2.5
3,343,267	-				-3.2
3,343,267	-				-1.7
3,343,327	+		PFLU_RS14940	0.11	-0.1
3,343,327	+		PFLU_RS14940	0.11	-0.1
3,343,327	+		PFLU_RS14940	0.11	-1.7
3,343,328	-		PFLU_RS14940	0.11	-2.5
3,343,328	-		PFLU_RS14940	0.11	-1.9
3,343,328	-		PFLU_RS14940	0.11	-3.0
3,343,328	-		PFLU_RS14940	0.11	-2.5
3,343,354	+		PFLU_RS14940	0.14	-0.1
3,343,354	+		PFLU_RS14940	0.14	-0.4
3,343,354	+		PFLU_RS14940	0.14	-1.1
3,343,354	+		PFLU_RS14940	0.14	-0.7
3,343,355	-		PFLU_RS14940	0.14	-1.2
3,343,355	-		PFLU_RS14940	0.14	-2.7
3,343,355	-		PFLU_RS14940	0.14	-0.7
3,343,440	+		PFLU_RS14940	0.22	+0.3
3,343,441	-		PFLU_RS14940	0.22	-0.1
3,343,441	-		PFLU_RS14940	0.22	-0.7
3,343,453	-		PFLU_RS14940	0.23	-1.4
3,343,453	-		PFLU_RS14940	0.23	-1.9
3,343,453	-		PFLU_RS14940	0.23	-1.4
3,343,453	-		PFLU_RS14940	0.23	+0.2
3,343,551	+		PFLU_RS14940	0.32	-1.5
3,343,551	+		PFLU_RS14940	0.32	-2.8
3,343,551	+		PFLU_RS14940	0.32	-1.9
3,343,568	-		PFLU_RS14940	0.34	-2.4
3,343,665	+		PFLU_RS14940	0.43	-0.4
3,343,666	-		PFLU_RS14940	0.43	-1.5
3,343,666	-		PFLU_RS14940	0.43	-2.1
3,343,669	+		PFLU_RS14940	0.43	-1.9
3,343,670	-		PFLU_RS14940	0.43	-2.2
3,343,707	+		PFLU_RS14940	0.46	-0.9
3,343,708	-		PFLU_RS14940	0.47	-3.8
3,343,728	+		PFLU_RS14940	0.48	-0.9
3,343,729	-		PFLU_RS14940	0.48	-1.5
3,343,729	-		PFLU_RS14940	0.48	-2.9
3,343,831	+		PFLU_RS14940	0.58	-1.8
3,343,859	+		PFLU_RS14940	0.60	-1.5
3,343,859	+		PFLU_RS14940	0.60	-0.9
3,343,897	+		PFLU_RS14940	0.64	-0.1
3,343,927	-		PFLU_RS14940	0.67	-0.4
3,343,927	-		PFLU_RS14940	0.67	-2.2
3,343,988	-		PFLU_RS14940	0.72	-2.2
3,344,014	-		PFLU_RS14940	0.75	-3.6
3,344,014	-		PFLU_RS14940	0.75	-1.1
3,344,064	-		PFLU_RS14940	0.79	-0.3
3,344,064	-		PFLU_RS14940	0.79	-2.7
3,344,064	-		PFLU_RS14940	0.79	-1.7
3,344,064	-		PFLU_RS14940	0.79	+0.9
3,344,173	-		PFLU_RS14940	0.89	-0.1
3,344,215	+				-0.8
3,344,216	-				-2.1
3,344,216	-				-1.8
3,344,263	+				-2.2
3,344,263	+				-2.9
3,344,263	+				-1.9
3,344,264	-				+0.9
3,344,264	-				-0.7
3,344,264	-				-1.1
3,344,264	-				+0.9
3,344,264	-				-1.2
3,344,266	+				-3.1
3,344,266	+				-0.8
3,344,266	+				-1.7
3,344,266	+				-1.8
3,344,266	+				-0.8
3,344,266	+				+1.9
3,344,267	-				-2.4
3,344,267	-				-2.2
3,344,267	-				-1.1
3,344,267	-				+0.3
3,344,267	-				-0.9
3,344,267	-				-0.2
3,344,267	-				-1.2
3,344,267	-				-2.3
3,344,267	-				-3.2
3,344,310	+				-1.4
3,344,310	+				-2.5
3,344,331	-				-1.1
3,344,458	+				+1.9
3,344,458	+				-2.9
3,344,458	+				-0.8
3,344,458	+				-0.7
3,344,458	+				-2.1
3,344,459	-				-0.9
3,344,459	-				-0.5
3,344,459	-				-1.1
3,344,621	+		PFLU_RS14945	0.19	-2.1
3,344,621	+		PFLU_RS14945	0.19	-1.9
3,344,621	+		PFLU_RS14945	0.19	-1.2
3,344,621	+		PFLU_RS14945	0.19	+2.5
3,344,621	+		PFLU_RS14945	0.19	-0.7
3,344,621	+		PFLU_RS14945	0.19	-1.4
3,344,622	-		PFLU_RS14945	0.19	-0.7
3,344,622	-		PFLU_RS14945	0.19	+0.9
3,344,628	+		PFLU_RS14945	0.20	-1.5
3,344,628	+		PFLU_RS14945	0.20	-2.2
3,344,628	+		PFLU_RS14945	0.20	-2.5
3,344,629	-		PFLU_RS14945	0.20	-1.1
3,344,629	-		PFLU_RS14945	0.20	-2.0
3,344,631	+		PFLU_RS14945	0.20	+0.9
3,344,632	-		PFLU_RS14945	0.20	-4.0
3,344,632	-		PFLU_RS14945	0.20	+0.3
3,344,632	-		PFLU_RS14945	0.20	+0.9
3,344,669	+		PFLU_RS14945	0.24	-1.7
3,344,669	+		PFLU_RS14945	0.24	-2.4
3,344,693	+		PFLU_RS14945	0.27	-0.4
3,344,693	+		PFLU_RS14945	0.27	-1.9
3,344,694	-		PFLU_RS14945	0.27	-0.7
3,344,694	-		PFLU_RS14945	0.27	-0.1
3,344,697	+		PFLU_RS14945	0.27	-0.8
3,344,697	+		PFLU_RS14945	0.27	-2.7
3,344,697	+		PFLU_RS14945	0.27	-1.2
3,344,697	+		PFLU_RS14945	0.27	-2.4
3,344,697	+		PFLU_RS14945	0.27	-0.3
3,344,697	+		PFLU_RS14945	0.27	-2.1
3,344,697	+		PFLU_RS14945	0.27	-1.2
3,344,697	+		PFLU_RS14945	0.27	-1.2
3,344,698	-		PFLU_RS14945	0.28	-1.9
3,344,698	-		PFLU_RS14945	0.28	-1.4
3,344,698	-		PFLU_RS14945	0.28	-2.1
3,344,698	-		PFLU_RS14945	0.28	-1.1
3,344,698	-		PFLU_RS14945	0.28	-0.4
3,344,748	+		PFLU_RS14945	0.33	-0.7
3,344,748	+		PFLU_RS14945	0.33	-2.5
3,344,749	-		PFLU_RS14945	0.33	-1.9
3,344,749	-		PFLU_RS14945	0.33	-2.1
3,344,767	+		PFLU_RS14945	0.35	-1.9
3,344,767	+		PFLU_RS14945	0.35	-1.4
3,344,767	+		PFLU_RS14945	0.35	-2.9
3,344,768	-		PFLU_RS14945	0.35	-0.7
3,344,768	-		PFLU_RS14945	0.35	-2.1
3,344,768	-		PFLU_RS14945	0.35	-3.0
3,344,768	-		PFLU_RS14945	0.35	+0.6
3,344,768	-		PFLU_RS14945	0.35	-2.5
3,344,794	+		PFLU_RS14945	0.38	+0.4
3,344,794	+		PFLU_RS14945	0.38	-0.7
3,344,794	+		PFLU_RS14945	0.38	+0.9
3,344,795	-		PFLU_RS14945	0.38	-0.1
3,344,795	-		PFLU_RS14945	0.38	-2.7
3,344,795	-		PFLU_RS14945	0.38	-2.3
3,344,816	+		PFLU_RS14945	0.41	-0.7
3,344,816	+		PFLU_RS14945	0.41	-1.9
3,344,816	+		PFLU_RS14945	0.41	-1.0
3,344,816	+		PFLU_RS14945	0.41	-0.7
3,344,817	-		PFLU_RS14945	0.41	-2.4
3,344,817	-		PFLU_RS14945	0.41	-0.1
3,344,817	-		PFLU_RS14945	0.41	-0.1
3,344,817	-		PFLU_RS14945	0.41	-0.1
3,344,867	+		PFLU_RS14945	0.47	-1.9
3,344,921	+		PFLU_RS14945	0.53	-1.2
3,344,921	+		PFLU_RS14945	0.53	-0.9
3,344,921	+		PFLU_RS14945	0.53	-2.1
3,344,921	+		PFLU_RS14945	0.53	+0.9
3,344,921	+		PFLU_RS14945	0.53	-0.9
3,344,921	+		PFLU_RS14945	0.53	-1.4
3,344,921	+		PFLU_RS14945	0.53	-3.1
3,344,921	+		PFLU_RS14945	0.53	-1.7
3,344,921	+		PFLU_RS14945	0.53	-2.8
3,344,922	-		PFLU_RS14945	0.53	-1.4
3,344,922	-		PFLU_RS14945	0.53	-0.5
3,344,922	-		PFLU_RS14945	0.53	-1.7
3,344,922	-		PFLU_RS14945	0.53	-1.1
3,344,922	-		PFLU_RS14945	0.53	-1.9
3,344,922	-		PFLU_RS14945	0.53	-1.9
3,344,922	-		PFLU_RS14945	0.53	-1.9
3,344,922	-		PFLU_RS14945	0.53	-1.8
3,344,958	-		PFLU_RS14945	0.57	-2.4
3,344,991	+		PFLU_RS14945	0.60	-2.2
3,344,991	+		PFLU_RS14945	0.60	-2.2
3,344,991	+		PFLU_RS14945	0.60	-1.8
3,344,991	+		PFLU_RS14945	0.60	-1.8
3,344,992	-		PFLU_RS14945	0.61	-3.5
3,344,992	-		PFLU_RS14945	0.61	-1.9
3,344,992	-		PFLU_RS14945	0.61	-1.1
3,345,022	+		PFLU_RS14945	0.64	+0.7
3,345,112	+		PFLU_RS14945	0.74	-1.4
3,345,112	+		PFLU_RS14945	0.74	-2.7
3,345,112	+		PFLU_RS14945	0.74	-1.5
3,345,112	+		PFLU_RS14945	0.74	+0.2
3,345,113	-		PFLU_RS14945	0.74	-1.1
3,345,119	+		PFLU_RS14945	0.75	-0.8
3,345,119	+		PFLU_RS14945	0.75	-1.1
3,345,119	+		PFLU_RS14945	0.75	-1.7
3,345,119	+		PFLU_RS14945	0.75	-1.7
3,345,119	+		PFLU_RS14945	0.75	-1.5
3,345,120	-		PFLU_RS14945	0.75	-0.4
3,345,120	-		PFLU_RS14945	0.75	-1.7
3,345,120	-		PFLU_RS14945	0.75	+0.9
3,345,132	+		PFLU_RS14945	0.76	-1.5
3,345,133	-		PFLU_RS14945	0.76	-1.4
3,345,133	-		PFLU_RS14945	0.76	-1.4
3,345,146	+		PFLU_RS14945	0.78	-2.4
3,345,146	+		PFLU_RS14945	0.78	-1.5
3,345,146	+		PFLU_RS14945	0.78	-1.1
3,345,146	+		PFLU_RS14945	0.78	-3.9
3,345,147	-		PFLU_RS14945	0.78	-1.7
3,345,147	-		PFLU_RS14945	0.78	-2.1
3,345,147	-		PFLU_RS14945	0.78	-1.1
3,345,149	+		PFLU_RS14945	0.78	-1.1
3,345,149	+		PFLU_RS14945	0.78	-2.6
3,345,230	+		PFLU_RS14945	0.87	-2.5
3,345,231	-		PFLU_RS14945	0.87	-1.4
3,345,242	+		PFLU_RS14945	0.89	-0.7
3,345,242	+		PFLU_RS14945	0.89	-1.7
3,345,242	+		PFLU_RS14945	0.89	-0.7
3,345,242	+		PFLU_RS14945	0.89	-1.9
3,345,242	+		PFLU_RS14945	0.89	-0.7
3,345,242	+		PFLU_RS14945	0.89	-3.5
3,345,242	+		PFLU_RS14945	0.89	+0.1
3,345,242	+		PFLU_RS14945	0.89	-2.7
3,345,243	-		PFLU_RS14945	0.89	-2.4