Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14255

Experiment: trans-aconitic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	trans-aconitic 5 mM (C)
3,192,919	+		PFLU_RS30805	0.83	+1.3
3,192,919	+		PFLU_RS30805	0.83	-1.4
3,192,920	-		PFLU_RS30805	0.83	-2.2
3,192,924	-		PFLU_RS30805	0.83	+0.6
3,192,953	+		PFLU_RS30805	0.86	-0.8
3,193,029	+				-0.4
3,193,029	+				+0.3
3,193,041	-				-0.1
3,193,179	+				+3.7
3,193,180	-				+0.6
3,193,456	-				-0.1
3,193,610	+				-0.1
3,193,655	+				+0.3
3,193,747	+				-0.9
3,193,747	+				+1.3
3,193,747	+				+0.5
3,193,747	+				-1.4
3,193,747	+				+0.5
3,193,748	-				-0.3
3,193,748	-				+0.0
3,193,748	-				+0.9
3,193,748	-				-0.9
3,193,806	+				+0.4
3,193,806	+				+0.1
3,193,806	+				-0.1
3,193,807	-				+0.3
3,193,807	-				-0.1
3,193,895	+		PFLU_RS14255	0.10	+0.9
3,193,895	+		PFLU_RS14255	0.10	-1.4
3,193,895	+		PFLU_RS14255	0.10	-0.1
3,193,896	-		PFLU_RS14255	0.10	+0.6
3,194,061	+		PFLU_RS14255	0.22	+0.0
3,194,061	+		PFLU_RS14255	0.22	-2.1
3,194,061	+		PFLU_RS14255	0.22	-0.8
3,194,062	-		PFLU_RS14255	0.22	+0.5
3,194,062	-		PFLU_RS14255	0.22	-0.5
3,194,270	-		PFLU_RS14255	0.37	-0.1
3,194,397	-		PFLU_RS14255	0.46	-0.1
3,194,397	-		PFLU_RS14255	0.46	-1.1
3,194,643	+		PFLU_RS14255	0.63	-1.1
3,194,644	-		PFLU_RS14255	0.63	+0.6
3,194,644	-		PFLU_RS14255	0.63	-2.2
3,194,686	-		PFLU_RS14255	0.66	-0.2
3,194,686	-		PFLU_RS14255	0.66	+2.3
3,195,096	+				+1.2
3,195,224	+				-0.9
3,195,225	-				+0.3
3,195,238	+				-1.2
3,195,238	+				-1.4
3,195,239	-				-0.4
3,195,239	-				+0.7
3,195,242	+				-1.1
3,195,242	+				+2.3
3,195,242	+				+0.9
3,195,243	-				-0.7
3,195,243	-				+0.6
3,195,243	-				+0.3
3,195,243	-				+0.9
3,195,462	+				-1.7
3,195,462	+				-0.8
3,195,498	+		PFLU_RS14260	0.11	+1.1
3,195,498	+		PFLU_RS14260	0.11	-0.7
3,195,498	+		PFLU_RS14260	0.11	-0.1
3,195,498	+		PFLU_RS14260	0.11	-1.1
3,195,498	+		PFLU_RS14260	0.11	-0.1
3,195,498	+		PFLU_RS14260	0.11	+0.9
3,195,499	-		PFLU_RS14260	0.11	+1.7
3,195,517	+		PFLU_RS14260	0.11	+0.3
3,195,518	-		PFLU_RS14260	0.11	-0.9
3,195,524	-		PFLU_RS14260	0.11	-0.6
3,195,642	-		PFLU_RS14260	0.15	+0.3
3,195,642	-		PFLU_RS14260	0.15	-0.1
3,195,655	+		PFLU_RS14260	0.15	+1.5
3,195,673	+		PFLU_RS14260	0.16	+1.5
3,195,673	+		PFLU_RS14260	0.16	+0.2
3,195,725	+		PFLU_RS14260	0.18	+0.0
3,195,725	+		PFLU_RS14260	0.18	-0.1
3,195,725	+		PFLU_RS14260	0.18	-0.7
3,195,726	-		PFLU_RS14260	0.18	+0.9
3,195,726	-		PFLU_RS14260	0.18	-0.5
3,195,726	-		PFLU_RS14260	0.18	+0.4
3,195,747	-		PFLU_RS14260	0.18	+0.3
3,195,852	+		PFLU_RS14260	0.22	-0.3
3,195,853	-		PFLU_RS14260	0.22	-0.7
3,195,853	-		PFLU_RS14260	0.22	+0.0
3,195,906	+		PFLU_RS14260	0.23	+0.5
3,195,907	-		PFLU_RS14260	0.23	+0.3
3,196,013	+		PFLU_RS14260	0.27	-0.8
3,196,013	+		PFLU_RS14260	0.27	-1.1
3,196,046	+		PFLU_RS14260	0.28	+0.2
3,196,046	+		PFLU_RS14260	0.28	+1.3
3,196,046	+		PFLU_RS14260	0.28	+1.3
3,196,046	+		PFLU_RS14260	0.28	+1.1
3,196,047	-		PFLU_RS14260	0.28	+0.1
3,196,061	+		PFLU_RS14260	0.28	+0.3
3,196,061	+		PFLU_RS14260	0.28	-0.7
3,196,062	-		PFLU_RS14260	0.28	-0.9
3,196,062	-		PFLU_RS14260	0.28	-0.5
3,196,161	-		PFLU_RS14260	0.31	+0.4