Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS11990

Experiment: trans-aconitic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	trans-aconitic 5 mM (C)
2,664,784	-		PFLU_RS11980	0.77	-0.8
2,664,784	-		PFLU_RS11980	0.77	-0.6
2,664,784	-		PFLU_RS11980	0.77	-2.3
2,664,808	-		PFLU_RS11980	0.80	-3.0
2,664,811	+		PFLU_RS11980	0.81	+1.0
2,664,811	+		PFLU_RS11980	0.81	-0.8
2,664,811	+		PFLU_RS11980	0.81	-1.3
2,664,811	+		PFLU_RS11980	0.81	+0.4
2,664,812	-		PFLU_RS11980	0.81	-1.6
2,664,812	-		PFLU_RS11980	0.81	-1.0
2,664,812	-		PFLU_RS11980	0.81	+1.0
2,664,812	-		PFLU_RS11980	0.81	-0.6
2,664,812	-		PFLU_RS11980	0.81	-0.2
2,664,812	-		PFLU_RS11980	0.81	-0.0
2,664,812	-		PFLU_RS11980	0.81	-1.6
2,664,845	+		PFLU_RS11980	0.85	-0.6
2,664,846	-		PFLU_RS11980	0.85	-1.8
2,664,937	+				-2.0
2,664,937	+				-1.8
2,664,937	+				-0.0
2,664,937	+				+0.3
2,664,937	+				-1.6
2,664,937	+				-1.0
2,664,937	+				-1.0
2,664,937	+				-1.0
2,664,937	+				+2.0
2,664,938	-				+0.4
2,664,938	-				+0.4
2,664,938	-				-0.0
2,664,938	-				-0.7
2,664,938	-				-1.3
2,664,938	-				+1.4
2,664,938	-				-0.7
2,664,938	-				+0.8
2,664,938	-				-0.6
2,664,938	-				+0.4
2,664,938	-				-1.6
2,664,960	+				-0.0
2,664,961	-				-0.5
2,665,028	+				-0.3
2,665,028	+				+1.0
2,665,057	-		PFLU_RS11985	0.12	+0.4
2,665,166	+		PFLU_RS11985	0.27	-0.4
2,665,176	+		PFLU_RS11985	0.29	-0.9
2,665,176	+		PFLU_RS11985	0.29	-2.0
2,665,176	+		PFLU_RS11985	0.29	+0.5
2,665,176	+		PFLU_RS11985	0.29	-0.6
2,665,176	+		PFLU_RS11985	0.29	-1.6
2,665,176	+		PFLU_RS11985	0.29	+0.1
2,665,176	+		PFLU_RS11985	0.29	-0.5
2,665,176	+		PFLU_RS11985	0.29	+0.7
2,665,177	-		PFLU_RS11985	0.29	+0.3
2,665,177	-		PFLU_RS11985	0.29	-0.0
2,665,177	-		PFLU_RS11985	0.29	-0.4
2,665,229	+		PFLU_RS11985	0.36	+0.5
2,665,254	+		PFLU_RS11985	0.40	+0.5
2,665,329	+		PFLU_RS11985	0.50	+0.4
2,665,329	+		PFLU_RS11985	0.50	+0.7
2,665,329	+		PFLU_RS11985	0.50	+1.8
2,665,330	-		PFLU_RS11985	0.50	+0.1
2,665,389	+		PFLU_RS11985	0.58	+1.0
2,665,496	+		PFLU_RS11985	0.73	-0.2
2,665,497	-		PFLU_RS11985	0.73	+0.4
2,665,547	+		PFLU_RS11985	0.80	-1.7
2,665,547	+		PFLU_RS11985	0.80	-1.4
2,665,548	-		PFLU_RS11985	0.80	+1.0
2,665,628	+				+0.4
2,665,754	+				-1.5
2,665,754	+				-0.5
2,665,755	-				+0.8
2,665,755	-				+1.5
2,665,755	-				+1.4
2,666,105	+		PFLU_RS11990	0.63	+1.0
2,666,105	+		PFLU_RS11990	0.63	-0.1
2,666,105	+		PFLU_RS11990	0.63	+0.4
2,666,106	-		PFLU_RS11990	0.64	-0.0
2,666,106	-		PFLU_RS11990	0.64	+0.8
2,666,171	+		PFLU_RS11990	0.75	-0.3
2,666,171	+		PFLU_RS11990	0.75	-0.1
2,666,172	-		PFLU_RS11990	0.75	+0.6
2,666,340	+				-0.0
2,666,340	+				-0.1
2,666,341	-				-1.3
2,666,483	+				-0.8
2,666,483	+				+0.1
2,666,576	-		PFLU_RS11995	0.11	+0.7
2,666,576	-		PFLU_RS11995	0.11	-0.6
2,666,609	+		PFLU_RS11995	0.13	+1.0
2,666,609	+		PFLU_RS11995	0.13	-0.9
2,666,609	+		PFLU_RS11995	0.13	-0.1
2,666,609	+		PFLU_RS11995	0.13	+1.0
2,666,610	-		PFLU_RS11995	0.13	-0.1
2,666,610	-		PFLU_RS11995	0.13	-0.2
2,666,610	-		PFLU_RS11995	0.13	+1.9
2,666,670	+		PFLU_RS11995	0.16	-0.4
2,666,670	+		PFLU_RS11995	0.16	-0.0
2,666,670	+		PFLU_RS11995	0.16	+0.2
2,666,671	-		PFLU_RS11995	0.16	+0.1
2,666,671	-		PFLU_RS11995	0.16	-0.2
2,666,825	+		PFLU_RS11995	0.25	+0.6
2,666,825	+		PFLU_RS11995	0.25	-1.3
2,666,826	-		PFLU_RS11995	0.25	-0.6
2,666,826	-		PFLU_RS11995	0.25	-1.3
2,666,826	-		PFLU_RS11995	0.25	-0.4
2,666,826	-		PFLU_RS11995	0.25	-1.0
2,667,084	+		PFLU_RS11995	0.39	-0.8
2,667,095	-		PFLU_RS11995	0.40	+1.3
2,667,095	-		PFLU_RS11995	0.40	+1.7
2,667,107	+		PFLU_RS11995	0.40	+0.1
2,667,231	+		PFLU_RS11995	0.47	-2.2
2,667,232	-		PFLU_RS11995	0.47	-1.3
2,667,245	+		PFLU_RS11995	0.48	-0.0
2,667,246	-		PFLU_RS11995	0.48	-0.1
2,667,246	-		PFLU_RS11995	0.48	+0.1
2,667,246	-		PFLU_RS11995	0.48	+2.6