Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4813

Experiment: nitrogen source nitrite 5mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 5mM
5,563,440	+		Pf6N2E2_4812	0.18	+2.0
5,563,440	+		Pf6N2E2_4812	0.18	-2.7
5,563,440	+		Pf6N2E2_4812	0.18	-0.5
5,563,441	-		Pf6N2E2_4812	0.18	-1.3
5,563,441	-		Pf6N2E2_4812	0.18	-1.0
5,563,441	-		Pf6N2E2_4812	0.18	-0.6
5,563,569	+		Pf6N2E2_4812	0.31	-0.7
5,563,570	-		Pf6N2E2_4812	0.31	-2.0
5,563,833	-		Pf6N2E2_4812	0.58	-2.5
5,563,833	-		Pf6N2E2_4812	0.58	-2.4
5,563,862	+		Pf6N2E2_4812	0.60	-1.7
5,563,862	+		Pf6N2E2_4812	0.60	+0.1
5,563,862	+		Pf6N2E2_4812	0.60	-1.4
5,563,863	-		Pf6N2E2_4812	0.61	-0.3
5,563,863	-		Pf6N2E2_4812	0.61	+1.3
5,563,863	-		Pf6N2E2_4812	0.61	-2.0
5,563,863	-		Pf6N2E2_4812	0.61	-0.8
5,563,879	+		Pf6N2E2_4812	0.62	+2.0
5,563,879	+		Pf6N2E2_4812	0.62	+0.2
5,563,880	-		Pf6N2E2_4812	0.62	+3.4
5,563,880	-		Pf6N2E2_4812	0.62	+1.3
5,563,931	-		Pf6N2E2_4812	0.67	+2.0
5,563,970	+		Pf6N2E2_4812	0.71	-0.1
5,563,971	-		Pf6N2E2_4812	0.71	+1.0
5,563,971	-		Pf6N2E2_4812	0.71	+1.0
5,563,971	-		Pf6N2E2_4812	0.71	+0.0
5,563,971	-		Pf6N2E2_4812	0.71	-0.7
5,564,045	+		Pf6N2E2_4812	0.79	-0.8
5,564,045	+		Pf6N2E2_4812	0.79	-0.8
5,564,046	-		Pf6N2E2_4812	0.79	+0.5
5,564,046	-		Pf6N2E2_4812	0.79	-0.6
5,564,046	-		Pf6N2E2_4812	0.79	-0.1
5,564,241	+				-1.7
5,564,276	+				-0.9
5,564,277	-				-2.8
5,564,290	+				+0.5
5,564,305	+				-0.6
5,564,305	+				-0.7
5,564,305	+				-1.0
5,564,306	-				-1.8
5,564,306	-				+1.0
5,564,306	-				-1.3
5,564,480	+				+0.0
5,564,503	+				-2.7
5,564,503	+				-3.0
5,564,504	-				-3.0
5,564,504	-				-1.5
5,564,648	+		Pf6N2E2_4813	0.13	-1.8
5,564,648	+		Pf6N2E2_4813	0.13	-0.3
5,564,648	+		Pf6N2E2_4813	0.13	-1.5
5,564,649	-		Pf6N2E2_4813	0.13	-0.3
5,564,649	-		Pf6N2E2_4813	0.13	-2.1
5,564,707	+		Pf6N2E2_4813	0.16	-4.2
5,564,707	+		Pf6N2E2_4813	0.16	+1.0
5,564,707	+		Pf6N2E2_4813	0.16	-1.8
5,564,707	+		Pf6N2E2_4813	0.16	-2.0
5,564,707	+		Pf6N2E2_4813	0.16	-4.0
5,564,707	+		Pf6N2E2_4813	0.16	+0.0
5,564,707	+		Pf6N2E2_4813	0.16	-0.9
5,564,707	+		Pf6N2E2_4813	0.16	-0.5
5,564,707	+		Pf6N2E2_4813	0.16	-3.6
5,564,708	-		Pf6N2E2_4813	0.16	-0.5
5,564,708	-		Pf6N2E2_4813	0.16	-1.6
5,564,708	-		Pf6N2E2_4813	0.16	-2.5
5,564,708	-		Pf6N2E2_4813	0.16	-3.7
5,564,708	-		Pf6N2E2_4813	0.16	-1.8
5,564,708	-		Pf6N2E2_4813	0.16	-0.8
5,564,709	+		Pf6N2E2_4813	0.16	-2.7
5,564,710	-		Pf6N2E2_4813	0.16	-3.1
5,564,710	-		Pf6N2E2_4813	0.16	-2.3
5,564,824	+		Pf6N2E2_4813	0.21	-2.2
5,564,825	-		Pf6N2E2_4813	0.21	-0.7
5,564,839	+		Pf6N2E2_4813	0.21	-1.6
5,564,840	-		Pf6N2E2_4813	0.21	-2.1
5,564,891	+		Pf6N2E2_4813	0.23	-3.4
5,564,891	+		Pf6N2E2_4813	0.23	-1.3
5,564,891	+		Pf6N2E2_4813	0.23	-1.4
5,564,892	-		Pf6N2E2_4813	0.23	-2.4
5,564,892	-		Pf6N2E2_4813	0.23	-0.2
5,564,892	-		Pf6N2E2_4813	0.23	+0.5
5,565,128	-				+1.2
5,565,173	+		Pf6N2E2_4813	0.35	-3.1
5,565,336	+		Pf6N2E2_4813	0.42	+2.0
5,565,337	-		Pf6N2E2_4813	0.42	-1.4
5,565,412	+		Pf6N2E2_4813	0.45	+1.0
5,565,413	-		Pf6N2E2_4813	0.45	-0.5
5,565,613	+		Pf6N2E2_4813	0.54	+1.0
5,565,614	-		Pf6N2E2_4813	0.54	+2.0
5,565,614	-		Pf6N2E2_4813	0.54	-2.3
5,565,614	-		Pf6N2E2_4813	0.54	-1.7
5,565,625	+		Pf6N2E2_4813	0.54	-3.2
5,565,625	+		Pf6N2E2_4813	0.54	-0.3
5,565,696	+		Pf6N2E2_4813	0.57	-1.1
5,565,705	+		Pf6N2E2_4813	0.57	-0.8
5,565,769	+		Pf6N2E2_4813	0.60	-2.4
5,565,769	+		Pf6N2E2_4813	0.60	-1.0
5,565,769	+		Pf6N2E2_4813	0.60	+1.0
5,565,770	-		Pf6N2E2_4813	0.60	-0.5
5,565,770	-		Pf6N2E2_4813	0.60	+0.5
5,565,770	-		Pf6N2E2_4813	0.60	-2.3
5,565,770	-		Pf6N2E2_4813	0.60	-2.2
5,565,770	-		Pf6N2E2_4813	0.60	-2.5
5,565,770	-		Pf6N2E2_4813	0.60	-1.2
5,565,803	-		Pf6N2E2_4813	0.61	-2.8
5,566,006	+		Pf6N2E2_4813	0.70	-1.1
5,566,006	+		Pf6N2E2_4813	0.70	-3.6
5,566,007	-		Pf6N2E2_4813	0.70	+0.2
5,566,007	-		Pf6N2E2_4813	0.70	-0.8
5,566,007	-		Pf6N2E2_4813	0.70	-0.3
5,566,007	-		Pf6N2E2_4813	0.70	-3.5
5,566,007	-		Pf6N2E2_4813	0.70	-2.5
5,566,007	-		Pf6N2E2_4813	0.70	-2.8
5,566,007	-		Pf6N2E2_4813	0.70	-1.6
5,566,191	-		Pf6N2E2_4813	0.78	-3.1
5,566,191	-		Pf6N2E2_4813	0.78	-0.2
5,566,191	-		Pf6N2E2_4813	0.78	-0.8
5,566,191	-		Pf6N2E2_4813	0.78	-2.0
5,566,191	-		Pf6N2E2_4813	0.78	-1.3
5,566,251	+		Pf6N2E2_4813	0.80	-3.8
5,566,251	+		Pf6N2E2_4813	0.80	+2.0
5,566,251	+		Pf6N2E2_4813	0.80	-4.5
5,566,251	+		Pf6N2E2_4813	0.80	+0.0
5,566,252	-		Pf6N2E2_4813	0.80	-0.3
5,566,252	-		Pf6N2E2_4813	0.80	-1.7
5,566,254	+		Pf6N2E2_4813	0.80	-1.2
5,566,254	+		Pf6N2E2_4813	0.80	-1.3
5,566,254	+		Pf6N2E2_4813	0.80	-1.5
5,566,255	-		Pf6N2E2_4813	0.80	-0.1
5,566,255	-		Pf6N2E2_4813	0.80	-1.9
5,566,255	-		Pf6N2E2_4813	0.80	-1.5
5,566,255	-		Pf6N2E2_4813	0.80	-3.4
5,566,255	-		Pf6N2E2_4813	0.80	+0.5
5,566,255	-		Pf6N2E2_4813	0.80	-2.7
5,566,383	+		Pf6N2E2_4813	0.86	-4.3
5,566,509	+				-3.3
5,566,509	+				+2.0
5,566,510	-				-3.4
5,566,510	-				+2.0
5,566,514	+				-1.7
5,566,514	+				+2.0
5,566,515	-				-1.1
5,566,515	-				-2.4
5,566,515	-				+0.8
5,566,574	+				-3.0
5,566,575	-				-1.2
5,566,582	-				+0.0
5,566,590	+				-0.6
5,566,788	+				-0.6
5,566,788	+				-0.8
5,566,788	+				-0.8
5,566,788	+				-3.4
5,566,788	+				+0.0
5,566,788	+				+0.2
5,566,788	+				+1.0
5,566,788	+				+1.0
5,566,788	+				-0.2
5,566,789	-				+0.5
5,566,789	-				-0.3
5,566,789	-				+2.0
5,566,789	-				-1.0
5,566,789	-				-2.2
5,566,789	-				-1.1
5,566,789	-				+0.8
5,566,789	-				+2.0
5,566,789	-				+1.0
5,566,789	-				-0.3
5,566,789	-				-2.0
5,566,789	-				-0.5
5,566,789	-				+1.0
5,566,789	-				+1.6
5,566,789	-				-0.2
5,566,794	+				-0.3
5,566,794	+				+1.8
5,566,794	+				-1.7
5,566,794	+				-0.5
5,566,794	+				-0.1
5,566,794	+				-0.5
5,566,794	+				-1.4
5,566,794	+				-0.7
5,566,794	+				-0.3
5,566,794	+				-0.6
5,566,794	+				-0.2
5,566,794	+				+0.0
5,566,794	+				-2.3
5,566,794	+				+0.7
5,566,794	+				-2.2
5,566,795	-				-2.0
5,566,795	-				-1.0
5,566,795	-				-0.3
5,566,795	-				+1.0
5,566,795	-				+1.0
5,566,795	-				+0.5
5,566,795	-				-0.5
5,566,795	-				+0.5
5,566,795	-				+0.0
5,566,795	-				+2.3
5,566,795	-				+0.3
5,566,861	+				+0.2
5,566,861	+				-0.2
5,566,861	+				+0.1
5,566,861	+				-1.8
5,566,939	+		Pf6N2E2_4814	0.14	+0.6
5,567,220	+		Pf6N2E2_4814	0.59	-0.3
5,567,220	+		Pf6N2E2_4814	0.59	+0.0
5,567,220	+		Pf6N2E2_4814	0.59	-1.8
5,567,220	+		Pf6N2E2_4814	0.59	-0.8
5,567,220	+		Pf6N2E2_4814	0.59	-3.9
5,567,221	-		Pf6N2E2_4814	0.59	+0.5
5,567,221	-		Pf6N2E2_4814	0.59	-0.0
5,567,221	-		Pf6N2E2_4814	0.59	+0.8
5,567,221	-		Pf6N2E2_4814	0.59	-2.3
5,567,221	-		Pf6N2E2_4814	0.59	-1.0
5,567,399	+		Pf6N2E2_4814	0.87	-0.4
5,567,399	+		Pf6N2E2_4814	0.87	+0.1
5,567,400	-		Pf6N2E2_4814	0.87	-1.2
5,567,454	+				-0.6
5,567,454	+				+0.5
5,567,455	-				-0.2
5,567,455	-				-0.0
5,567,455	-				+0.0
5,567,455	-				+0.3
5,567,455	-				-0.3
5,567,455	-				-2.0
5,567,478	+				+0.7
5,567,479	-				+1.0
5,567,491	+				-1.1
5,567,492	-				+0.6
5,567,541	+				-0.1
5,567,541	+				+0.6
5,567,558	-				-0.1
5,567,606	+				-0.9
5,567,682	+				+0.3
5,567,682	+				-0.1
5,567,683	-				-0.0
5,567,704	-				+0.1