Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4256

Experiment: nitrogen source nitrite 5mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 5mM
4,953,333	+		Pf6N2E2_4255	0.73	+0.6
4,953,751	+				+0.5
4,953,751	+				-0.4
4,953,752	-				-0.4
4,953,761	-				-0.7
4,953,768	+				-2.8
4,953,769	-				+0.4
4,953,769	-				+0.5
4,953,769	-				-3.5
4,953,774	+				+0.2
4,953,774	+				-0.0
4,953,774	+				-0.9
4,953,774	+				-0.6
4,953,775	-				-0.6
4,953,775	-				+0.4
4,953,775	-				+0.1
4,953,775	-				+0.4
4,953,775	-				+0.4
4,953,775	-				-0.1
4,953,775	-				+0.4
4,953,775	-				+0.8
4,953,775	-				+0.0
4,953,775	-				+0.4
4,953,778	+				+0.7
4,953,778	+				-1.6
4,953,779	-				-2.2
4,953,902	+				+0.0
4,953,902	+				-1.6
4,953,903	-				-1.5
4,953,903	-				-1.4
4,953,945	-				+0.5
4,953,955	+				+0.0
4,953,956	-				-2.3
4,953,982	+				-0.6
4,953,982	+				-1.0
4,954,027	-				-0.7
4,954,071	+				+0.0
4,954,072	-				-1.2
4,954,195	-				-2.5
4,954,355	+		Pf6N2E2_4256	0.19	-1.0
4,954,356	-		Pf6N2E2_4256	0.19	-0.3
4,954,356	-		Pf6N2E2_4256	0.19	+0.8
4,954,356	-		Pf6N2E2_4256	0.19	-0.3
4,954,356	-		Pf6N2E2_4256	0.19	-1.7
4,954,361	+		Pf6N2E2_4256	0.19	-0.3
4,954,361	+		Pf6N2E2_4256	0.19	-0.1
4,954,361	+		Pf6N2E2_4256	0.19	-0.3
4,954,361	+		Pf6N2E2_4256	0.19	-0.8
4,954,362	-		Pf6N2E2_4256	0.19	-0.6
4,954,382	+		Pf6N2E2_4256	0.21	-1.6
4,954,382	+		Pf6N2E2_4256	0.21	-1.0
4,954,382	+		Pf6N2E2_4256	0.21	-1.0
4,954,382	+		Pf6N2E2_4256	0.21	-1.1
4,954,382	+		Pf6N2E2_4256	0.21	-0.1
4,954,382	+		Pf6N2E2_4256	0.21	-0.5
4,954,383	-		Pf6N2E2_4256	0.21	-2.5
4,954,389	+		Pf6N2E2_4256	0.22	-1.1
4,954,390	-		Pf6N2E2_4256	0.22	-2.3
4,954,390	-		Pf6N2E2_4256	0.22	-0.6
4,954,390	-		Pf6N2E2_4256	0.22	-0.6
4,954,390	-				+0.4
4,954,390	-		Pf6N2E2_4256	0.22	-0.3
4,954,390	-		Pf6N2E2_4256	0.22	-0.6
4,954,390	-		Pf6N2E2_4256	0.22	-0.2
4,954,412	+		Pf6N2E2_4256	0.24	-0.5
4,954,412	+		Pf6N2E2_4256	0.24	-0.3
4,954,413	-		Pf6N2E2_4256	0.24	-0.2
4,954,500	+		Pf6N2E2_4256	0.32	-1.7
4,954,500	+		Pf6N2E2_4256	0.32	-0.3
4,954,500	+		Pf6N2E2_4256	0.32	-0.5
4,954,514	+		Pf6N2E2_4256	0.34	-0.6
4,954,514	+		Pf6N2E2_4256	0.34	-0.4
4,954,515	-		Pf6N2E2_4256	0.34	+0.2
4,954,515	-		Pf6N2E2_4256	0.34	-0.8
4,954,556	+		Pf6N2E2_4256	0.38	-1.0
4,954,595	-		Pf6N2E2_4256	0.41	+0.3
4,954,683	-		Pf6N2E2_4256	0.50	-1.1
4,954,732	+		Pf6N2E2_4256	0.54	-1.2
4,954,732	+		Pf6N2E2_4256	0.54	-1.0
4,954,732	+		Pf6N2E2_4256	0.54	-1.7
4,954,732	+		Pf6N2E2_4256	0.54	-0.5
4,954,732	+		Pf6N2E2_4256	0.54	-1.1
4,954,733	-		Pf6N2E2_4256	0.54	-0.1
4,954,889	+		Pf6N2E2_4256	0.69	+0.1
4,954,889	+		Pf6N2E2_4256	0.69	+0.2
4,954,889	+		Pf6N2E2_4256	0.69	-0.8
4,954,889	+		Pf6N2E2_4256	0.69	-0.4
4,954,889	+		Pf6N2E2_4256	0.69	+0.4
4,954,889	+		Pf6N2E2_4256	0.69	-1.4
4,954,889	+		Pf6N2E2_4256	0.69	-0.1
4,954,889	+		Pf6N2E2_4256	0.69	+0.4
4,954,890	-		Pf6N2E2_4256	0.69	-0.6
4,954,890	-		Pf6N2E2_4256	0.69	+2.0
4,954,890	-		Pf6N2E2_4256	0.69	+0.0
4,954,890	-		Pf6N2E2_4256	0.69	-1.1
4,954,890	-		Pf6N2E2_4256	0.69	+1.0
4,954,890	-		Pf6N2E2_4256	0.69	+0.5
4,954,890	-		Pf6N2E2_4256	0.69	+0.7
4,954,893	+		Pf6N2E2_4256	0.69	+0.8
4,954,893	+		Pf6N2E2_4256	0.69	+2.0
4,954,893	+		Pf6N2E2_4256	0.69	-0.2
4,954,893	+		Pf6N2E2_4256	0.69	+0.6
4,954,893	+		Pf6N2E2_4256	0.69	+0.7
4,954,894	-		Pf6N2E2_4256	0.69	+2.0
4,954,894	-		Pf6N2E2_4256	0.69	+2.0
4,954,992	-		Pf6N2E2_4256	0.79	-1.1
4,955,090	+		Pf6N2E2_4256	0.88	+1.0
4,955,090	+		Pf6N2E2_4256	0.88	-0.7
4,955,207	+				+0.4
4,955,207	+				-1.5
4,955,207	+				+1.6
4,955,207	+				-1.7
4,955,207	+				+0.4
4,955,207	+				+1.0
4,955,207	+				+1.0
4,955,207	+				-2.4
4,955,207	+				-0.6
4,955,207	+				-2.3
4,955,208	-				+0.5
4,955,208	-				-3.1
4,955,208	-				+0.7
4,955,208	-				-0.5
4,955,208	-				-0.3
4,955,208	-				+0.4
4,955,208	-				-0.9
4,955,208	-				-1.1
4,955,208	-				-0.3
4,955,208	-				+0.3
4,955,232	+				-0.2
4,955,233	-				-1.7
4,955,543	+		Pf6N2E2_4257	0.23	+2.0
4,955,544	-		Pf6N2E2_4257	0.23	-0.5
4,955,544	-		Pf6N2E2_4257	0.23	-1.1
4,955,649	-		Pf6N2E2_4257	0.30	-0.3
4,955,649	-		Pf6N2E2_4257	0.30	+1.0
4,955,649	-		Pf6N2E2_4257	0.30	-0.7
4,955,649	-		Pf6N2E2_4257	0.30	-0.2
4,955,720	+		Pf6N2E2_4257	0.35	+0.5
4,955,721	-		Pf6N2E2_4257	0.35	+0.9
4,955,721	-		Pf6N2E2_4257	0.35	-1.8
4,955,774	+		Pf6N2E2_4257	0.39	+1.0
4,955,921	+		Pf6N2E2_4257	0.49	+3.9
4,955,921	+		Pf6N2E2_4257	0.49	-1.1
4,955,921	+		Pf6N2E2_4257	0.49	-0.9
4,955,921	+		Pf6N2E2_4257	0.49	+1.0
4,955,921	+		Pf6N2E2_4257	0.49	+2.0
4,955,921	+		Pf6N2E2_4257	0.49	-0.8
4,955,921	+		Pf6N2E2_4257	0.49	-1.8
4,955,921	+		Pf6N2E2_4257	0.49	+0.8
4,955,922	-		Pf6N2E2_4257	0.49	+0.3
4,955,922	-		Pf6N2E2_4257	0.49	+0.3
4,955,922	-		Pf6N2E2_4257	0.49	+1.1
4,955,922	-		Pf6N2E2_4257	0.49	+0.0
4,955,922	-		Pf6N2E2_4257	0.49	-0.4
4,955,922	-		Pf6N2E2_4257	0.49	+0.5
4,955,922	-		Pf6N2E2_4257	0.49	+0.6
4,955,922	-		Pf6N2E2_4257	0.49	+0.4
4,955,922	-		Pf6N2E2_4257	0.49	-1.0
4,955,922	-		Pf6N2E2_4257	0.49	-1.1
4,956,046	+		Pf6N2E2_4257	0.58	-0.0
4,956,046	+		Pf6N2E2_4257	0.58	-0.1
4,956,046	+		Pf6N2E2_4257	0.58	-3.1
4,956,047	-		Pf6N2E2_4257	0.58	+0.0
4,956,047	-		Pf6N2E2_4257	0.58	-0.4
4,956,080	+		Pf6N2E2_4257	0.60	-1.8
4,956,081	-		Pf6N2E2_4257	0.60	+0.6
4,956,116	+		Pf6N2E2_4257	0.63	-2.0
4,956,116	+		Pf6N2E2_4257	0.63	-0.0
4,956,116	+		Pf6N2E2_4257	0.63	+0.2
4,956,116	+		Pf6N2E2_4257	0.63	-0.9
4,956,116	+		Pf6N2E2_4257	0.63	-0.7
4,956,117	-		Pf6N2E2_4257	0.63	-0.2
4,956,117	-		Pf6N2E2_4257	0.63	-0.9
4,956,125	+		Pf6N2E2_4257	0.63	+0.1
4,956,125	+		Pf6N2E2_4257	0.63	-0.4
4,956,125	+		Pf6N2E2_4257	0.63	-0.4
4,956,125	+		Pf6N2E2_4257	0.63	-2.7
4,956,126	-		Pf6N2E2_4257	0.63	+0.4
4,956,126	-		Pf6N2E2_4257	0.63	+0.8