Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3111

Experiment: nitrogen source nitrite 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3109 and Pf6N2E2_3110 are separated by 89 nucleotidesPf6N2E2_3110 and Pf6N2E2_3111 overlap by 4 nucleotidesPf6N2E2_3111 and Pf6N2E2_3112 are separated by 84 nucleotides Pf6N2E2_3109 - Outer membrane lipoprotein omp16 precursor, at 3,597,941 to 3,598,732 _3109 Pf6N2E2_3110 - Putative lipoprotein in cluster with COG2110, at 3,598,822 to 3,599,151 _3110 Pf6N2E2_3111 - Hydrolase of the alpha/beta superfamily in cluster with COG2110, at 3,599,148 to 3,600,053 _3111 Pf6N2E2_3112 - FIG00953322: hypothetical protein, at 3,600,138 to 3,601,415 _3112 Position (kb) 3599 3600 3601Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3598.181 kb on + strand, within Pf6N2E2_3109at 3598.181 kb on + strand, within Pf6N2E2_3109at 3598.181 kb on + strand, within Pf6N2E2_3109at 3598.374 kb on + strand, within Pf6N2E2_3109at 3598.374 kb on + strand, within Pf6N2E2_3109at 3598.375 kb on - strand, within Pf6N2E2_3109at 3598.375 kb on - strand, within Pf6N2E2_3109at 3598.375 kb on - strand, within Pf6N2E2_3109at 3598.375 kb on - strand, within Pf6N2E2_3109at 3598.377 kb on + strand, within Pf6N2E2_3109at 3598.377 kb on + strand, within Pf6N2E2_3109at 3598.378 kb on - strand, within Pf6N2E2_3109at 3598.378 kb on - strand, within Pf6N2E2_3109at 3598.378 kb on - strand, within Pf6N2E2_3109at 3598.378 kb on - strand, within Pf6N2E2_3109at 3598.378 kb on - strand, within Pf6N2E2_3109at 3598.511 kb on + strand, within Pf6N2E2_3109at 3598.511 kb on + strand, within Pf6N2E2_3109at 3598.553 kb on - strand, within Pf6N2E2_3109at 3598.553 kb on - strand, within Pf6N2E2_3109at 3598.605 kb on - strand, within Pf6N2E2_3109at 3598.985 kb on + strand, within Pf6N2E2_3110at 3598.985 kb on + strand, within Pf6N2E2_3110at 3598.985 kb on + strand, within Pf6N2E2_3110at 3598.986 kb on - strand, within Pf6N2E2_3110at 3598.986 kb on - strand, within Pf6N2E2_3110at 3598.986 kb on - strand, within Pf6N2E2_3110at 3598.986 kb on - strand, within Pf6N2E2_3110at 3598.986 kb on - strand, within Pf6N2E2_3110at 3598.986 kb on - strand, within Pf6N2E2_3110at 3598.986 kb on - strand, within Pf6N2E2_3110at 3599.069 kb on + strand, within Pf6N2E2_3110at 3599.072 kb on + strand, within Pf6N2E2_3110at 3599.072 kb on + strand, within Pf6N2E2_3110at 3599.072 kb on + strand, within Pf6N2E2_3110at 3599.072 kb on + strand, within Pf6N2E2_3110at 3599.073 kb on - strand, within Pf6N2E2_3110at 3599.073 kb on - strand, within Pf6N2E2_3110at 3599.136 kb on + strandat 3599.136 kb on + strandat 3599.136 kb on + strandat 3599.341 kb on + strand, within Pf6N2E2_3111at 3599.342 kb on - strand, within Pf6N2E2_3111at 3599.342 kb on - strand, within Pf6N2E2_3111at 3599.342 kb on - strand, within Pf6N2E2_3111at 3599.392 kb on + strand, within Pf6N2E2_3111at 3599.392 kb on + strand, within Pf6N2E2_3111at 3599.392 kb on + strand, within Pf6N2E2_3111at 3599.393 kb on - strand, within Pf6N2E2_3111at 3599.393 kb on - strand, within Pf6N2E2_3111at 3599.393 kb on - strand, within Pf6N2E2_3111at 3599.393 kb on - strand, within Pf6N2E2_3111at 3599.501 kb on + strand, within Pf6N2E2_3111at 3599.501 kb on + strand, within Pf6N2E2_3111at 3599.501 kb on + strand, within Pf6N2E2_3111at 3599.501 kb on + strand, within Pf6N2E2_3111at 3599.501 kb on + strand, within Pf6N2E2_3111at 3599.502 kb on - strand, within Pf6N2E2_3111at 3599.707 kb on + strand, within Pf6N2E2_3111at 3599.708 kb on - strand, within Pf6N2E2_3111at 3599.990 kb on - strandat 3599.990 kb on - strandat 3600.027 kb on + strandat 3600.027 kb on + strandat 3600.028 kb on - strandat 3600.147 kb on - strandat 3600.299 kb on + strand, within Pf6N2E2_3112at 3600.299 kb on + strand, within Pf6N2E2_3112at 3600.299 kb on + strand, within Pf6N2E2_3112at 3600.299 kb on + strand, within Pf6N2E2_3112at 3600.299 kb on + strand, within Pf6N2E2_3112at 3600.299 kb on + strand, within Pf6N2E2_3112at 3600.299 kb on + strand, within Pf6N2E2_3112at 3600.299 kb on + strand, within Pf6N2E2_3112at 3600.299 kb on + strand, within Pf6N2E2_3112at 3600.299 kb on + strand, within Pf6N2E2_3112at 3600.299 kb on + strand, within Pf6N2E2_3112at 3600.299 kb on + strand, within Pf6N2E2_3112at 3600.300 kb on - strand, within Pf6N2E2_3112at 3600.300 kb on - strand, within Pf6N2E2_3112at 3600.300 kb on - strand, within Pf6N2E2_3112at 3600.300 kb on - strand, within Pf6N2E2_3112at 3600.300 kb on - strand, within Pf6N2E2_3112at 3600.300 kb on - strand, within Pf6N2E2_3112at 3600.300 kb on - strand, within Pf6N2E2_3112at 3600.300 kb on - strand, within Pf6N2E2_3112at 3600.383 kb on - strand, within Pf6N2E2_3112at 3600.383 kb on - strand, within Pf6N2E2_3112at 3600.383 kb on - strand, within Pf6N2E2_3112at 3600.388 kb on + strand, within Pf6N2E2_3112at 3600.388 kb on + strand, within Pf6N2E2_3112at 3600.389 kb on - strand, within Pf6N2E2_3112at 3600.389 kb on - strandat 3600.389 kb on - strand, within Pf6N2E2_3112at 3600.389 kb on - strand, within Pf6N2E2_3112at 3600.428 kb on + strand, within Pf6N2E2_3112at 3600.482 kb on - strand, within Pf6N2E2_3112at 3600.482 kb on - strand, within Pf6N2E2_3112at 3600.482 kb on - strand, within Pf6N2E2_3112at 3600.805 kb on + strand, within Pf6N2E2_3112at 3600.806 kb on - strand, within Pf6N2E2_3112at 3600.806 kb on - strand, within Pf6N2E2_3112at 3600.806 kb on - strand, within Pf6N2E2_3112

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 5mM
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3,598,181 + Pf6N2E2_3109 0.30 +2.1
3,598,181 + Pf6N2E2_3109 0.30 +0.7
3,598,181 + Pf6N2E2_3109 0.30 +0.9
3,598,374 + Pf6N2E2_3109 0.55 -5.2
3,598,374 + Pf6N2E2_3109 0.55 +0.1
3,598,375 - Pf6N2E2_3109 0.55 -0.6
3,598,375 - Pf6N2E2_3109 0.55 +0.0
3,598,375 - Pf6N2E2_3109 0.55 +0.9
3,598,375 - Pf6N2E2_3109 0.55 -0.1
3,598,377 + Pf6N2E2_3109 0.55 -0.1
3,598,377 + Pf6N2E2_3109 0.55 +0.6
3,598,378 - Pf6N2E2_3109 0.55 -0.1
3,598,378 - Pf6N2E2_3109 0.55 +0.8
3,598,378 - Pf6N2E2_3109 0.55 +0.8
3,598,378 - Pf6N2E2_3109 0.55 -0.6
3,598,378 - Pf6N2E2_3109 0.55 -0.0
3,598,511 + Pf6N2E2_3109 0.72 +0.8
3,598,511 + Pf6N2E2_3109 0.72 +1.1
3,598,553 - Pf6N2E2_3109 0.77 -2.1
3,598,553 - Pf6N2E2_3109 0.77 +2.0
3,598,605 - Pf6N2E2_3109 0.84 +0.7
3,598,985 + Pf6N2E2_3110 0.49 +0.0
3,598,985 + Pf6N2E2_3110 0.49 -0.5
3,598,985 + Pf6N2E2_3110 0.49 +1.0
3,598,986 - Pf6N2E2_3110 0.50 -0.9
3,598,986 - Pf6N2E2_3110 0.50 +0.4
3,598,986 - Pf6N2E2_3110 0.50 -1.7
3,598,986 - Pf6N2E2_3110 0.50 +0.1
3,598,986 - Pf6N2E2_3110 0.50 +1.4
3,598,986 - Pf6N2E2_3110 0.50 -0.4
3,598,986 - Pf6N2E2_3110 0.50 -1.5
3,599,069 + Pf6N2E2_3110 0.75 -0.4
3,599,072 + Pf6N2E2_3110 0.76 -1.2
3,599,072 + Pf6N2E2_3110 0.76 +1.4
3,599,072 + Pf6N2E2_3110 0.76 +0.4
3,599,072 + Pf6N2E2_3110 0.76 +1.0
3,599,073 - Pf6N2E2_3110 0.76 -0.3
3,599,073 - Pf6N2E2_3110 0.76 +2.0
3,599,136 + -0.8
3,599,136 + -2.4
3,599,136 + -0.5
3,599,341 + Pf6N2E2_3111 0.21 -0.4
3,599,342 - Pf6N2E2_3111 0.21 -1.5
3,599,342 - Pf6N2E2_3111 0.21 -2.1
3,599,342 - Pf6N2E2_3111 0.21 -0.4
3,599,392 + Pf6N2E2_3111 0.27 -2.1
3,599,392 + Pf6N2E2_3111 0.27 -1.2
3,599,392 + Pf6N2E2_3111 0.27 +1.0
3,599,393 - Pf6N2E2_3111 0.27 +0.3
3,599,393 - Pf6N2E2_3111 0.27 +2.0
3,599,393 - Pf6N2E2_3111 0.27 +1.4
3,599,393 - Pf6N2E2_3111 0.27 -0.3
3,599,501 + Pf6N2E2_3111 0.39 -0.2
3,599,501 + Pf6N2E2_3111 0.39 +0.4
3,599,501 + Pf6N2E2_3111 0.39 -1.2
3,599,501 + Pf6N2E2_3111 0.39 -0.3
3,599,501 + Pf6N2E2_3111 0.39 -1.1
3,599,502 - Pf6N2E2_3111 0.39 +0.2
3,599,707 + Pf6N2E2_3111 0.62 -0.8
3,599,708 - Pf6N2E2_3111 0.62 -0.6
3,599,990 - -0.9
3,599,990 - +0.6
3,600,027 + -3.2
3,600,027 + -0.3
3,600,028 - -0.3
3,600,147 - -0.1
3,600,299 + Pf6N2E2_3112 0.13 +1.0
3,600,299 + Pf6N2E2_3112 0.13 -0.8
3,600,299 + Pf6N2E2_3112 0.13 -0.6
3,600,299 + Pf6N2E2_3112 0.13 +2.0
3,600,299 + Pf6N2E2_3112 0.13 -2.5
3,600,299 + Pf6N2E2_3112 0.13 -4.0
3,600,299 + Pf6N2E2_3112 0.13 +0.7
3,600,299 + Pf6N2E2_3112 0.13 -0.3
3,600,299 + Pf6N2E2_3112 0.13 -1.1
3,600,299 + Pf6N2E2_3112 0.13 -1.0
3,600,299 + Pf6N2E2_3112 0.13 -0.0
3,600,299 + Pf6N2E2_3112 0.13 -0.5
3,600,300 - Pf6N2E2_3112 0.13 +0.4
3,600,300 - Pf6N2E2_3112 0.13 -0.4
3,600,300 - Pf6N2E2_3112 0.13 -0.9
3,600,300 - Pf6N2E2_3112 0.13 +0.4
3,600,300 - Pf6N2E2_3112 0.13 +0.1
3,600,300 - Pf6N2E2_3112 0.13 -1.9
3,600,300 - Pf6N2E2_3112 0.13 -1.1
3,600,300 - Pf6N2E2_3112 0.13 +0.5
3,600,383 - Pf6N2E2_3112 0.19 +0.4
3,600,383 - Pf6N2E2_3112 0.19 -3.2
3,600,383 - Pf6N2E2_3112 0.19 +0.7
3,600,388 + Pf6N2E2_3112 0.20 +0.0
3,600,388 + Pf6N2E2_3112 0.20 -1.8
3,600,389 - Pf6N2E2_3112 0.20 -1.8
3,600,389 - +0.4
3,600,389 - Pf6N2E2_3112 0.20 +0.0
3,600,389 - Pf6N2E2_3112 0.20 +0.0
3,600,428 + Pf6N2E2_3112 0.23 +1.3
3,600,482 - Pf6N2E2_3112 0.27 +2.0
3,600,482 - Pf6N2E2_3112 0.27 -0.9
3,600,482 - Pf6N2E2_3112 0.27 +2.0
3,600,805 + Pf6N2E2_3112 0.52 +0.9
3,600,806 - Pf6N2E2_3112 0.52 +1.4
3,600,806 - Pf6N2E2_3112 0.52 -0.5
3,600,806 - Pf6N2E2_3112 0.52 +2.0

Or see this region's nucleotide sequence