Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_215

Experiment: nitrogen source nitrite 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_214 and Pf6N2E2_215 are separated by 101 nucleotidesPf6N2E2_215 and Pf6N2E2_216 are separated by 225 nucleotidesPf6N2E2_216 and Pf6N2E2_217 overlap by 4 nucleotides Pf6N2E2_214 - dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL, at 270,857 to 271,807 _214 Pf6N2E2_215 - Outer membrane protein assembly factor YaeT precursor, at 271,909 to 274,275 _215 Pf6N2E2_216 - Copper-sensing two-component system response regulator CpxR, at 274,501 to 275,184 _216 Pf6N2E2_217 - Signal transduction histidine kinase, at 275,181 to 276,443 _217 Position (kb) 271 272 273 274 275Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 270.966 kb on + strand, within Pf6N2E2_214at 270.966 kb on + strand, within Pf6N2E2_214at 270.966 kb on + strand, within Pf6N2E2_214at 270.967 kb on - strand, within Pf6N2E2_214at 270.991 kb on - strand, within Pf6N2E2_214at 271.061 kb on + strand, within Pf6N2E2_214at 271.061 kb on + strand, within Pf6N2E2_214at 271.061 kb on + strand, within Pf6N2E2_214at 271.062 kb on - strand, within Pf6N2E2_214at 271.062 kb on - strand, within Pf6N2E2_214at 271.155 kb on + strand, within Pf6N2E2_214at 271.156 kb on - strand, within Pf6N2E2_214at 271.156 kb on - strand, within Pf6N2E2_214at 271.269 kb on - strand, within Pf6N2E2_214at 271.445 kb on + strand, within Pf6N2E2_214at 271.445 kb on + strand, within Pf6N2E2_214at 271.457 kb on + strand, within Pf6N2E2_214at 271.457 kb on + strand, within Pf6N2E2_214at 271.689 kb on - strand, within Pf6N2E2_214at 271.689 kb on - strand, within Pf6N2E2_214at 271.719 kb on + strandat 271.720 kb on - strandat 271.720 kb on - strandat 271.830 kb on + strandat 271.834 kb on + strandat 271.834 kb on + strandat 271.849 kb on - strandat 271.849 kb on - strandat 271.870 kb on - strandat 271.939 kb on + strandat 271.939 kb on + strandat 271.939 kb on + strandat 272.012 kb on + strandat 272.013 kb on - strandat 272.090 kb on + strandat 272.090 kb on + strandat 272.091 kb on - strandat 272.106 kb on - strandat 272.136 kb on + strandat 272.136 kb on + strandat 272.137 kb on - strandat 272.181 kb on - strand, within Pf6N2E2_215at 272.181 kb on - strand, within Pf6N2E2_215at 272.203 kb on + strand, within Pf6N2E2_215at 272.203 kb on + strand, within Pf6N2E2_215at 272.203 kb on + strand, within Pf6N2E2_215at 272.203 kb on + strand, within Pf6N2E2_215at 272.204 kb on - strand, within Pf6N2E2_215at 272.204 kb on - strand, within Pf6N2E2_215at 272.204 kb on - strand, within Pf6N2E2_215at 272.204 kb on - strand, within Pf6N2E2_215at 272.204 kb on - strand, within Pf6N2E2_215at 272.204 kb on - strand, within Pf6N2E2_215at 272.204 kb on - strand, within Pf6N2E2_215at 272.204 kb on - strand, within Pf6N2E2_215at 272.204 kb on - strand, within Pf6N2E2_215at 272.243 kb on + strand, within Pf6N2E2_215at 272.243 kb on + strand, within Pf6N2E2_215at 272.243 kb on + strand, within Pf6N2E2_215at 272.243 kb on + strand, within Pf6N2E2_215at 272.244 kb on - strand, within Pf6N2E2_215at 272.264 kb on + strand, within Pf6N2E2_215at 272.265 kb on - strand, within Pf6N2E2_215at 272.265 kb on - strand, within Pf6N2E2_215at 272.345 kb on + strand, within Pf6N2E2_215at 272.346 kb on - strand, within Pf6N2E2_215at 272.354 kb on + strand, within Pf6N2E2_215at 272.354 kb on + strand, within Pf6N2E2_215at 272.354 kb on + strand, within Pf6N2E2_215at 272.354 kb on + strand, within Pf6N2E2_215at 272.382 kb on - strand, within Pf6N2E2_215at 272.386 kb on - strand, within Pf6N2E2_215at 272.411 kb on - strand, within Pf6N2E2_215at 272.472 kb on - strand, within Pf6N2E2_215at 272.472 kb on - strand, within Pf6N2E2_215at 272.472 kb on - strand, within Pf6N2E2_215at 272.511 kb on + strandat 272.627 kb on + strand, within Pf6N2E2_215at 272.646 kb on - strand, within Pf6N2E2_215at 272.646 kb on - strand, within Pf6N2E2_215at 272.742 kb on - strand, within Pf6N2E2_215at 272.745 kb on + strand, within Pf6N2E2_215at 272.745 kb on + strand, within Pf6N2E2_215at 272.746 kb on - strand, within Pf6N2E2_215at 272.746 kb on - strand, within Pf6N2E2_215at 272.746 kb on - strand, within Pf6N2E2_215at 272.757 kb on - strand, within Pf6N2E2_215at 272.765 kb on + strand, within Pf6N2E2_215at 272.766 kb on - strand, within Pf6N2E2_215at 272.766 kb on - strand, within Pf6N2E2_215at 272.777 kb on + strand, within Pf6N2E2_215at 272.778 kb on - strand, within Pf6N2E2_215at 272.778 kb on - strand, within Pf6N2E2_215at 272.778 kb on - strand, within Pf6N2E2_215at 272.781 kb on - strand, within Pf6N2E2_215at 272.804 kb on + strand, within Pf6N2E2_215at 272.805 kb on - strand, within Pf6N2E2_215at 272.847 kb on - strand, within Pf6N2E2_215at 272.870 kb on + strand, within Pf6N2E2_215at 272.871 kb on - strand, within Pf6N2E2_215at 272.871 kb on - strand, within Pf6N2E2_215at 272.871 kb on - strand, within Pf6N2E2_215at 272.871 kb on - strand, within Pf6N2E2_215at 272.882 kb on + strand, within Pf6N2E2_215at 272.882 kb on + strand, within Pf6N2E2_215at 272.883 kb on - strand, within Pf6N2E2_215at 273.030 kb on - strand, within Pf6N2E2_215at 273.030 kb on - strand, within Pf6N2E2_215at 274.310 kb on + strandat 274.310 kb on + strandat 274.310 kb on + strandat 274.310 kb on + strandat 274.310 kb on + strandat 274.311 kb on - strandat 274.311 kb on - strandat 274.311 kb on - strandat 274.311 kb on - strandat 274.380 kb on + strandat 274.422 kb on + strandat 274.423 kb on - strandat 274.426 kb on + strandat 274.485 kb on + strandat 274.485 kb on + strandat 274.511 kb on + strandat 274.511 kb on + strandat 274.512 kb on - strandat 274.512 kb on - strandat 274.638 kb on + strand, within Pf6N2E2_216at 274.638 kb on + strand, within Pf6N2E2_216at 274.638 kb on + strand, within Pf6N2E2_216at 274.639 kb on - strand, within Pf6N2E2_216at 274.640 kb on - strand, within Pf6N2E2_216at 274.792 kb on + strand, within Pf6N2E2_216at 274.792 kb on + strand, within Pf6N2E2_216at 274.792 kb on + strand, within Pf6N2E2_216at 274.793 kb on - strand, within Pf6N2E2_216at 275.066 kb on - strand, within Pf6N2E2_216at 275.164 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 5mM
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270,966 + Pf6N2E2_214 0.11 +0.7
270,966 + Pf6N2E2_214 0.11 -2.2
270,966 + Pf6N2E2_214 0.11 -1.6
270,967 - Pf6N2E2_214 0.12 -0.6
270,991 - Pf6N2E2_214 0.14 +0.7
271,061 + Pf6N2E2_214 0.21 -0.7
271,061 + Pf6N2E2_214 0.21 -0.4
271,061 + Pf6N2E2_214 0.21 +1.9
271,062 - Pf6N2E2_214 0.22 +0.0
271,062 - Pf6N2E2_214 0.22 +0.8
271,155 + Pf6N2E2_214 0.31 -1.4
271,156 - Pf6N2E2_214 0.31 +1.9
271,156 - Pf6N2E2_214 0.31 -1.3
271,269 - Pf6N2E2_214 0.43 +0.9
271,445 + Pf6N2E2_214 0.62 +0.9
271,445 + Pf6N2E2_214 0.62 -1.8
271,457 + Pf6N2E2_214 0.63 +1.2
271,457 + Pf6N2E2_214 0.63 +0.9
271,689 - Pf6N2E2_214 0.87 -0.1
271,689 - Pf6N2E2_214 0.87 +1.9
271,719 + -0.4
271,720 - +0.7
271,720 - +0.3
271,830 + -0.3
271,834 + +0.6
271,834 + +1.9
271,849 - -2.1
271,849 - -0.9
271,870 - +0.4
271,939 + +0.6
271,939 + -3.1
271,939 + +1.0
272,012 + -0.0
272,013 - -0.1
272,090 + +0.4
272,090 + +1.5
272,091 - +1.9
272,106 - -0.5
272,136 + +0.3
272,136 + +0.5
272,137 - +1.9
272,181 - Pf6N2E2_215 0.11 +1.9
272,181 - Pf6N2E2_215 0.11 +1.9
272,203 + Pf6N2E2_215 0.12 +0.3
272,203 + Pf6N2E2_215 0.12 -1.8
272,203 + Pf6N2E2_215 0.12 +1.9
272,203 + Pf6N2E2_215 0.12 -0.9
272,204 - Pf6N2E2_215 0.12 -0.6
272,204 - Pf6N2E2_215 0.12 +0.3
272,204 - Pf6N2E2_215 0.12 +0.2
272,204 - Pf6N2E2_215 0.12 -0.4
272,204 - Pf6N2E2_215 0.12 -1.1
272,204 - Pf6N2E2_215 0.12 +0.4
272,204 - Pf6N2E2_215 0.12 +0.9
272,204 - Pf6N2E2_215 0.12 -0.0
272,204 - Pf6N2E2_215 0.12 +0.9
272,243 + Pf6N2E2_215 0.14 -1.4
272,243 + Pf6N2E2_215 0.14 +0.2
272,243 + Pf6N2E2_215 0.14 +0.3
272,243 + Pf6N2E2_215 0.14 -1.9
272,244 - Pf6N2E2_215 0.14 -1.4
272,264 + Pf6N2E2_215 0.15 -2.1
272,265 - Pf6N2E2_215 0.15 +1.9
272,265 - Pf6N2E2_215 0.15 +1.2
272,345 + Pf6N2E2_215 0.18 -0.4
272,346 - Pf6N2E2_215 0.18 -1.8
272,354 + Pf6N2E2_215 0.19 +0.2
272,354 + Pf6N2E2_215 0.19 +0.9
272,354 + Pf6N2E2_215 0.19 -1.7
272,354 + Pf6N2E2_215 0.19 +0.0
272,382 - Pf6N2E2_215 0.20 +0.9
272,386 - Pf6N2E2_215 0.20 -0.9
272,411 - Pf6N2E2_215 0.21 +1.9
272,472 - Pf6N2E2_215 0.24 +1.9
272,472 - Pf6N2E2_215 0.24 -2.8
272,472 - Pf6N2E2_215 0.24 +1.9
272,511 + -0.1
272,627 + Pf6N2E2_215 0.30 -0.4
272,646 - Pf6N2E2_215 0.31 -2.2
272,646 - Pf6N2E2_215 0.31 -0.7
272,742 - Pf6N2E2_215 0.35 -0.0
272,745 + Pf6N2E2_215 0.35 +0.2
272,745 + Pf6N2E2_215 0.35 +1.9
272,746 - Pf6N2E2_215 0.35 -1.1
272,746 - Pf6N2E2_215 0.35 +1.9
272,746 - Pf6N2E2_215 0.35 +0.2
272,757 - Pf6N2E2_215 0.36 +0.2
272,765 + Pf6N2E2_215 0.36 +1.9
272,766 - Pf6N2E2_215 0.36 -1.1
272,766 - Pf6N2E2_215 0.36 -0.0
272,777 + Pf6N2E2_215 0.37 -0.1
272,778 - Pf6N2E2_215 0.37 -1.0
272,778 - Pf6N2E2_215 0.37 +0.2
272,778 - Pf6N2E2_215 0.37 -1.9
272,781 - Pf6N2E2_215 0.37 -1.4
272,804 + Pf6N2E2_215 0.38 +0.3
272,805 - Pf6N2E2_215 0.38 -0.1
272,847 - Pf6N2E2_215 0.40 -0.1
272,870 + Pf6N2E2_215 0.41 -0.3
272,871 - Pf6N2E2_215 0.41 -1.4
272,871 - Pf6N2E2_215 0.41 -2.2
272,871 - Pf6N2E2_215 0.41 -0.1
272,871 - Pf6N2E2_215 0.41 -0.6
272,882 + Pf6N2E2_215 0.41 -0.6
272,882 + Pf6N2E2_215 0.41 +0.1
272,883 - Pf6N2E2_215 0.41 -0.1
273,030 - Pf6N2E2_215 0.47 -1.4
273,030 - Pf6N2E2_215 0.47 +0.0
274,310 + -1.4
274,310 + +0.0
274,310 + -0.2
274,310 + +0.8
274,310 + -1.4
274,311 - +1.9
274,311 - +0.9
274,311 - +0.3
274,311 - +0.9
274,380 + +0.2
274,422 + +1.3
274,423 - +0.9
274,426 + +0.2
274,485 + -1.9
274,485 + -0.1
274,511 + +0.6
274,511 + -0.6
274,512 - -2.3
274,512 - +1.9
274,638 + Pf6N2E2_216 0.20 -0.6
274,638 + Pf6N2E2_216 0.20 +1.9
274,638 + Pf6N2E2_216 0.20 -0.1
274,639 - Pf6N2E2_216 0.20 -0.6
274,640 - Pf6N2E2_216 0.20 +0.9
274,792 + Pf6N2E2_216 0.43 -0.7
274,792 + Pf6N2E2_216 0.43 +0.6
274,792 + Pf6N2E2_216 0.43 -0.1
274,793 - Pf6N2E2_216 0.43 +0.3
275,066 - Pf6N2E2_216 0.83 -1.2
275,164 + -0.6

Or see this region's nucleotide sequence