Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS11170

Experiment: 4-Acetoxy-3-methoxycinnamic 2 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Acetoxy-3-methoxycinnamic 2 mM (C)
2,468,524	+		PFLU_RS11165	0.11	+0.2
2,468,526	+		PFLU_RS11165	0.11	-0.9
2,468,526	+		PFLU_RS11165	0.11	-0.9
2,468,526	+		PFLU_RS11165	0.11	+2.0
2,468,526	+		PFLU_RS11165	0.11	+1.6
2,468,526	+		PFLU_RS11165	0.11	+1.0
2,468,526	+		PFLU_RS11165	0.11	-0.8
2,468,526	+		PFLU_RS11165	0.11	-1.8
2,468,526	+		PFLU_RS11165	0.11	+0.2
2,468,526	+		PFLU_RS11165	0.11	+0.8
2,468,526	+		PFLU_RS11165	0.11	+2.4
2,468,527	-		PFLU_RS11165	0.12	-0.8
2,468,527	-		PFLU_RS11165	0.12	+0.6
2,468,527	-		PFLU_RS11165	0.12	-1.6
2,468,527	-		PFLU_RS11165	0.12	+0.2
2,468,527	-		PFLU_RS11165	0.12	+2.2
2,468,527	-		PFLU_RS11165	0.12	-0.1
2,468,527	-		PFLU_RS11165	0.12	-2.6
2,468,527	-		PFLU_RS11165	0.12	+1.0
2,468,527	-		PFLU_RS11165	0.12	-2.8
2,468,527	-		PFLU_RS11165	0.12	-3.4
2,468,527	-		PFLU_RS11165	0.12	+0.1
2,468,527	-		PFLU_RS11165	0.12	-1.0
2,468,527	-		PFLU_RS11165	0.12	+1.9
2,468,527	-		PFLU_RS11165	0.12	+1.8
2,468,527	-		PFLU_RS11165	0.12	+1.2
2,468,576	-		PFLU_RS11165	0.22	-0.8
2,468,637	+		PFLU_RS11165	0.36	-2.8
2,468,826	+		PFLU_RS11165	0.77	-0.4
2,468,826	+		PFLU_RS11165	0.77	+0.4
2,468,827	-		PFLU_RS11165	0.77	-1.4
2,468,827	-		PFLU_RS11165	0.77	-0.8
2,468,827	-		PFLU_RS11165	0.77	-0.7
2,468,827	-		PFLU_RS11165	0.77	-2.2
2,468,902	-				+0.7
2,468,921	+				-1.4
2,468,921	+				+1.0
2,468,922	-				+0.2
2,468,922	-				+0.5
2,468,922	-				-1.4
2,468,922	-				+0.2
2,468,922	-				+1.2
2,468,971	-				-0.4
2,469,005	+				-0.8
2,469,006	-				-2.5
2,469,006	-				+1.0
2,469,006	-				+0.6
2,469,024	+				-1.4
2,469,024	+				-0.4
2,469,025	-				-2.1
2,469,025	-				-1.8
2,469,025	-				+0.7
2,469,025	-				-1.8
2,469,025	-				+0.1
2,469,025	-				+1.2
2,469,025	-				+1.4
2,469,028	+				+0.8
2,469,029	-				-1.4
2,469,055	+				+0.1
2,469,056	-				-0.4
2,469,056	-				-1.9
2,469,063	+				+0.4
2,469,063	+				-0.5
2,469,063	+				-0.9
2,469,063	+				+1.2
2,469,063	+				+2.0
2,469,064	-				+2.2
2,469,064	-				-0.4
2,469,064	-				+1.8
2,469,064	-				+0.5
2,469,064	-				+1.7
2,469,064	-				-3.4
2,469,064	-				-0.2
2,469,088	+				-1.7
2,469,088	+				-2.4
2,469,088	+				-1.1
2,469,089	-				-0.4
2,469,089	-				-1.1
2,469,089	-				+0.9
2,469,089	-				-0.6
2,469,089	-				+0.4
2,469,094	+				-1.2
2,469,094	+				-0.5
2,469,095	-				-1.4
2,469,095	-				-0.4
2,469,132	+				+1.3
2,469,132	+				+1.4
2,469,132	+				+0.8
2,469,140	+				+1.9
2,469,140	+				-0.5
2,469,140	+				+0.4
2,469,141	-				-1.4
2,469,141	-				+0.3
2,469,141	-				-0.9
2,469,141	-				-0.4
2,469,141	-				-0.0
2,469,300	+				-1.1
2,469,300	+				+1.2
2,469,301	-				+0.5
2,469,301	-				-2.1
2,469,430	+				-1.2
2,469,439	-				-0.8
2,469,439	-				+0.8
2,469,474	-				-0.6
2,469,474	-				-0.9
2,469,474	-				+0.6
2,469,474	-				-1.9
2,469,504	-				-0.9
2,469,520	+				+0.6
2,469,587	+				-0.2
2,469,588	-				+0.2
2,469,588	-				-0.4
2,469,818	+		PFLU_RS11170	0.39	-0.5
2,469,818	+		PFLU_RS11170	0.39	-0.2
2,469,818	+		PFLU_RS11170	0.39	+2.2
2,469,818	+		PFLU_RS11170	0.39	+0.2
2,469,818	+		PFLU_RS11170	0.39	-0.8
2,469,818	+		PFLU_RS11170	0.39	+0.4
2,469,818	+		PFLU_RS11170	0.39	-3.4
2,469,818	+		PFLU_RS11170	0.39	+1.9
2,469,818	+		PFLU_RS11170	0.39	-1.2
2,469,818	+		PFLU_RS11170	0.39	+0.2
2,469,818	+		PFLU_RS11170	0.39	-0.7
2,469,819	-		PFLU_RS11170	0.39	-0.2
2,469,819	-		PFLU_RS11170	0.39	-2.8
2,469,819	-		PFLU_RS11170	0.39	+0.7
2,469,819	-		PFLU_RS11170	0.39	+2.1
2,469,819	-		PFLU_RS11170	0.39	-1.4
2,469,955	+		PFLU_RS11170	0.56	-2.8
2,470,016	-		PFLU_RS11170	0.64	+1.5
2,470,053	+		PFLU_RS11170	0.69	-0.7
2,470,053	+		PFLU_RS11170	0.69	-0.5
2,470,054	-		PFLU_RS11170	0.69	-0.8
2,470,054	-		PFLU_RS11170	0.69	-0.2
2,470,054	-		PFLU_RS11170	0.69	+0.6
2,470,054	-		PFLU_RS11170	0.69	-1.1
2,470,108	+		PFLU_RS11170	0.76	+0.1
2,470,108	+		PFLU_RS11170	0.76	-1.1
2,470,108	+		PFLU_RS11170	0.76	+1.2
2,470,108	+		PFLU_RS11170	0.76	-0.1
2,470,108	+		PFLU_RS11170	0.76	-1.0
2,470,108	+		PFLU_RS11170	0.76	-3.5
2,470,109	-		PFLU_RS11170	0.76	-0.8
2,470,112	+		PFLU_RS11170	0.76	-0.7
2,470,112	+		PFLU_RS11170	0.76	+1.0
2,470,113	-		PFLU_RS11170	0.76	+1.7
2,470,113	-		PFLU_RS11170	0.76	-1.0
2,470,113	-		PFLU_RS11170	0.76	+0.5
2,470,113	-		PFLU_RS11170	0.76	-0.1
2,470,144	+		PFLU_RS11170	0.80	-1.6
2,470,145	-		PFLU_RS11170	0.80	-0.6
2,470,145	-		PFLU_RS11170	0.80	-1.7
2,470,235	-				-0.4
2,470,235	-				-1.1
2,470,444	+		PFLU_RS11175	0.23	+0.8
2,470,510	+		PFLU_RS11175	0.31	+0.7
2,470,606	+		PFLU_RS11175	0.43	+0.8
2,470,607	-		PFLU_RS11175	0.43	+0.6
2,470,607	-		PFLU_RS11175	0.43	-0.6
2,470,630	+		PFLU_RS11175	0.46	-0.8
2,470,631	-		PFLU_RS11175	0.46	-1.1
2,470,649	-		PFLU_RS11175	0.48	-1.4
2,470,649	-		PFLU_RS11175	0.48	-1.1
2,470,649	-		PFLU_RS11175	0.48	+0.4
2,470,649	-		PFLU_RS11175	0.48	+0.0
2,470,651	+		PFLU_RS11175	0.49	-1.8
2,470,651	+		PFLU_RS11175	0.49	-1.7
2,470,652	-		PFLU_RS11175	0.49	+0.6
2,470,652	-		PFLU_RS11175	0.49	-0.5
2,470,652	-		PFLU_RS11175	0.49	-2.6
2,470,772	-		PFLU_RS11175	0.63	-0.6
2,470,844	+		PFLU_RS11175	0.72	-1.8
2,470,845	-		PFLU_RS11175	0.72	-1.8
2,470,845	-		PFLU_RS11175	0.72	+0.6
2,470,973	+		PFLU_RS11175	0.88	+0.9
2,470,974	-		PFLU_RS11175	0.88	-0.1
2,471,093	+				-0.4
2,471,093	+				-1.8
2,471,093	+				-0.3
2,471,094	-				-0.4
2,471,094	-				+0.4
2,471,143	+				+2.6
2,471,143	+				-0.6
2,471,143	+				-1.1
2,471,143	+				-1.8
2,471,143	+				-0.4
2,471,143	+				-1.6
2,471,144	-				+0.8
2,471,144	-				+2.8
2,471,144	-				-2.4
2,471,144	-				+0.2
2,471,155	+				+1.2
2,471,156	-				+0.3
2,471,156	-				-0.2
2,471,156	-				+0.5
2,471,156	-				+0.5
2,471,246	+		PFLU_RS11180	0.14	-0.1
2,471,258	-		PFLU_RS11180	0.16	-2.4
2,471,258	-		PFLU_RS11180	0.16	-1.1