Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08235

Experiment: 4-Acetoxy-3-methoxycinnamic 2 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Acetoxy-3-methoxycinnamic 2 mM (C)
1,841,146	+		PFLU_RS08230	0.60	-0.7
1,841,146	+		PFLU_RS08230	0.60	-0.5
1,841,146	+		PFLU_RS08230	0.60	+0.6
1,841,146	+		PFLU_RS08230	0.60	-1.2
1,841,146	+		PFLU_RS08230	0.60	-1.7
1,841,147	-		PFLU_RS08230	0.60	-0.0
1,841,147	-		PFLU_RS08230	0.60	-1.0
1,841,147	-		PFLU_RS08230	0.60	+0.2
1,841,147	-		PFLU_RS08230	0.60	-0.6
1,841,147	-		PFLU_RS08230	0.60	+1.5
1,841,147	-		PFLU_RS08230	0.60	-0.2
1,841,330	-		PFLU_RS08230	0.69	+1.6
1,841,685	+		PFLU_RS08230	0.86	-2.4
1,841,685	+		PFLU_RS08230	0.86	-0.4
1,841,685	+		PFLU_RS08230	0.86	+0.3
1,841,685	+		PFLU_RS08230	0.86	-3.3
1,841,685	+		PFLU_RS08230	0.86	-0.4
1,841,685	+		PFLU_RS08230	0.86	-0.2
1,841,685	+		PFLU_RS08230	0.86	-0.1
1,841,685	+		PFLU_RS08230	0.86	-0.0
1,841,685	+		PFLU_RS08230	0.86	-0.7
1,841,686	-		PFLU_RS08230	0.86	+0.5
1,841,686	-		PFLU_RS08230	0.86	+1.6
1,841,686	-		PFLU_RS08230	0.86	-1.7
1,841,686	-		PFLU_RS08230	0.86	-0.0
1,841,686	-		PFLU_RS08230	0.86	-2.5
1,841,686	-		PFLU_RS08230	0.86	-0.0
1,841,686	-		PFLU_RS08230	0.86	-0.4
1,841,686	-		PFLU_RS08230	0.86	+0.2
1,841,686	-		PFLU_RS08230	0.86	+0.7
1,841,686	-		PFLU_RS08230	0.86	-0.0
1,841,973	+				+0.3
1,841,973	+				+0.1
1,842,048	+				-0.8
1,842,048	+				+0.6
1,842,049	-				+1.4
1,842,067	+				-2.2
1,842,067	+				+0.9
1,842,067	+				+0.8
1,842,067	+				+1.6
1,842,067	+				+1.2
1,842,067	+				+1.2
1,842,067	+				-0.9
1,842,067	+				+0.4
1,842,067	+				-0.0
1,842,067	+				-2.2
1,842,067	+				-0.0
1,842,067	+				-0.7
1,842,067	+				-1.3
1,842,067	+				+0.3
1,842,068	-				-0.4
1,842,068	-				-1.0
1,842,068	-				-0.2
1,842,068	-				+0.4
1,842,068	-				+0.5
1,842,068	-				-0.7
1,842,068	-				+1.6
1,842,068	-				-1.5
1,842,068	-				-1.0
1,842,113	+				+2.0
1,842,113	+				+0.6
1,842,114	-				+0.1
1,842,114	-				-0.7
1,842,114	-				-0.9
1,842,114	-				+0.2
1,842,114	-				+0.5
1,842,114	-				+0.4
1,842,401	+		PFLU_RS08235	0.53	+0.8
1,842,401	+		PFLU_RS08235	0.53	-1.7
1,842,402	-		PFLU_RS08235	0.53	-1.9
1,842,402	-		PFLU_RS08235	0.53	-0.6
1,842,402	-		PFLU_RS08235	0.53	-0.4
1,842,402	-		PFLU_RS08235	0.53	+3.6
1,842,427	+		PFLU_RS08235	0.57	+0.8
1,842,427	+		PFLU_RS08235	0.57	-0.1
1,842,428	-		PFLU_RS08235	0.58	-0.1
1,842,428	-		PFLU_RS08235	0.58	+0.6
1,842,457	+		PFLU_RS08235	0.63	+2.2
1,842,467	+		PFLU_RS08235	0.65	+1.2
1,842,467	+		PFLU_RS08235	0.65	-0.6
1,842,468	-		PFLU_RS08235	0.65	-3.3
1,842,468	-		PFLU_RS08235	0.65	+0.4
1,842,468	-		PFLU_RS08235	0.65	+1.0
1,842,468	-		PFLU_RS08235	0.65	-2.5
1,842,468	-		PFLU_RS08235	0.65	+0.3
1,842,468	-		PFLU_RS08235	0.65	+1.6
1,842,468	-		PFLU_RS08235	0.65	-1.2
1,842,517	-		PFLU_RS08235	0.74	-1.2
1,842,639	-				-2.9
1,842,639	-				-1.7
1,842,657	+				+1.6
1,842,658	-				-3.2
1,842,658	-				+0.6
1,842,658	-				+1.0
1,842,658	-				-1.6
1,842,658	-				+0.6
1,842,760	+				-0.7
1,842,760	+				-0.2
1,842,760	+				+1.6
1,842,760	+				-2.1
1,842,760	+				-0.2
1,842,761	-				-1.2
1,842,761	-				+2.0
1,842,888	+				-0.7
1,842,888	+				-0.2
1,842,888	+				-0.2
1,842,888	+				-1.7
1,842,889	-				+1.7
1,842,889	-				+0.4
1,842,889	-				-0.6
1,842,889	-				-0.6
1,842,889	-				-1.1
1,842,889	-				-0.6
1,842,889	-				+0.4
1,842,889	-				+0.9
1,843,027	-				-1.9
1,843,242	-		PFLU_RS08240	0.17	+2.7
1,843,362	+		PFLU_RS08240	0.22	-1.0
1,843,362	+		PFLU_RS08240	0.22	-0.7
1,843,362	+		PFLU_RS08240	0.22	-1.4
1,843,362	+		PFLU_RS08240	0.22	-1.7
1,843,363	-		PFLU_RS08240	0.22	-1.4
1,843,363	-		PFLU_RS08240	0.22	+2.6
1,843,363	-		PFLU_RS08240	0.22	+2.2
1,843,363	-		PFLU_RS08240	0.22	-1.2
1,843,363	-		PFLU_RS08240	0.22	-1.0
1,843,363	-		PFLU_RS08240	0.22	-0.1
1,843,363	-		PFLU_RS08240	0.22	+0.6
1,843,363	-		PFLU_RS08240	0.22	-0.0
1,843,363	-		PFLU_RS08240	0.22	-1.2
1,843,363	-		PFLU_RS08240	0.22	+1.0