Experiment: nitrogen source nitrate 5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_21 and Pf6N2E2_22 are separated by 145 nucleotides Pf6N2E2_22 and Pf6N2E2_23 are separated by 275 nucleotides
Pf6N2E2_21 - Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis, at 56,134 to 56,616
_21
Pf6N2E2_22 - L-ornithine 5-monooxygenase (EC 1.13.12.-), PvdA of pyoverdin biosynthesis, at 56,762 to 58,096
_22
Pf6N2E2_23 - Hybrid sensory histidine kinase in two-component regulatory system with EvgA, at 58,372 to 61,572
_23
Position (kb) 56
57
58
59 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 55.762 kb on - strand at 55.762 kb on - strand at 55.762 kb on - strand at 55.773 kb on + strand at 55.774 kb on - strand at 55.836 kb on + strand at 55.845 kb on + strand at 55.845 kb on + strand at 55.916 kb on + strand at 55.917 kb on - strand at 55.917 kb on - strand at 55.917 kb on - strand at 55.917 kb on - strand at 55.935 kb on + strand at 55.935 kb on + strand at 55.935 kb on + strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.936 kb on - strand at 55.944 kb on + strand at 55.944 kb on + strand at 55.945 kb on - strand at 55.997 kb on + strand at 55.998 kb on - strand at 56.021 kb on - strand at 56.029 kb on + strand at 56.104 kb on + strand at 56.104 kb on + strand at 56.146 kb on + strand at 56.147 kb on - strand at 56.147 kb on - strand at 56.224 kb on + strand, within Pf6N2E2_21 at 56.224 kb on + strand, within Pf6N2E2_21 at 56.225 kb on - strand, within Pf6N2E2_21 at 56.225 kb on - strand, within Pf6N2E2_21 at 56.284 kb on + strand, within Pf6N2E2_21 at 56.284 kb on + strand, within Pf6N2E2_21 at 56.328 kb on + strand, within Pf6N2E2_21 at 56.329 kb on - strand, within Pf6N2E2_21 at 56.614 kb on + strand at 56.614 kb on + strand at 56.624 kb on - strand at 57.017 kb on + strand, within Pf6N2E2_22 at 57.068 kb on + strand, within Pf6N2E2_22 at 57.095 kb on + strand, within Pf6N2E2_22 at 57.096 kb on - strand, within Pf6N2E2_22 at 57.234 kb on + strand, within Pf6N2E2_22 at 57.235 kb on - strand, within Pf6N2E2_22 at 57.235 kb on - strand, within Pf6N2E2_22 at 57.238 kb on + strand, within Pf6N2E2_22 at 57.238 kb on + strand, within Pf6N2E2_22 at 57.238 kb on + strand, within Pf6N2E2_22 at 57.238 kb on + strand, within Pf6N2E2_22 at 57.239 kb on - strand, within Pf6N2E2_22 at 57.338 kb on + strand, within Pf6N2E2_22 at 57.339 kb on - strand, within Pf6N2E2_22 at 57.614 kb on + strand, within Pf6N2E2_22 at 57.614 kb on + strand, within Pf6N2E2_22 at 57.614 kb on + strand, within Pf6N2E2_22 at 57.615 kb on - strand, within Pf6N2E2_22 at 57.615 kb on - strand, within Pf6N2E2_22 at 57.615 kb on - strand, within Pf6N2E2_22 at 57.650 kb on + strand, within Pf6N2E2_22 at 57.712 kb on + strand, within Pf6N2E2_22 at 57.712 kb on + strand, within Pf6N2E2_22 at 57.713 kb on - strand, within Pf6N2E2_22 at 57.899 kb on + strand, within Pf6N2E2_22 at 57.899 kb on + strand, within Pf6N2E2_22 at 57.899 kb on + strand, within Pf6N2E2_22 at 57.899 kb on + strand, within Pf6N2E2_22 at 57.900 kb on - strand, within Pf6N2E2_22 at 57.938 kb on + strand, within Pf6N2E2_22 at 57.938 kb on + strand, within Pf6N2E2_22 at 57.938 kb on + strand, within Pf6N2E2_22 at 57.939 kb on - strand, within Pf6N2E2_22 at 57.939 kb on - strand, within Pf6N2E2_22 at 57.939 kb on - strand, within Pf6N2E2_22 at 57.939 kb on - strand, within Pf6N2E2_22 at 57.939 kb on - strand, within Pf6N2E2_22 at 57.939 kb on - strand, within Pf6N2E2_22 at 57.939 kb on - strand, within Pf6N2E2_22 at 57.980 kb on - strand at 58.031 kb on + strand at 58.031 kb on + strand at 58.031 kb on + strand at 58.032 kb on - strand at 58.032 kb on - strand at 58.092 kb on + strand at 58.093 kb on - strand at 58.094 kb on + strand at 58.094 kb on + strand at 58.095 kb on - strand at 58.095 kb on - strand at 58.129 kb on + strand at 58.129 kb on + strand at 58.130 kb on - strand at 58.222 kb on + strand at 58.277 kb on + strand at 58.277 kb on + strand at 58.277 kb on + strand at 58.317 kb on + strand at 58.317 kb on + strand at 58.317 kb on + strand at 58.317 kb on + strand at 58.317 kb on + strand at 58.317 kb on + strand at 58.317 kb on + strand at 58.318 kb on - strand at 58.318 kb on - strand at 58.318 kb on - strand at 58.318 kb on - strand at 58.318 kb on - strand at 58.492 kb on + strand at 58.610 kb on - strand at 58.610 kb on - strand at 58.630 kb on + strand at 58.818 kb on - strand, within Pf6N2E2_23 at 58.883 kb on - strand, within Pf6N2E2_23 at 58.883 kb on - strand, within Pf6N2E2_23 at 58.883 kb on - strand, within Pf6N2E2_23 at 58.888 kb on + strand, within Pf6N2E2_23 at 58.889 kb on - strand, within Pf6N2E2_23 at 58.889 kb on - strand, within Pf6N2E2_23 at 58.997 kb on - strand, within Pf6N2E2_23 at 59.023 kb on + strand, within Pf6N2E2_23 at 59.024 kb on - strand, within Pf6N2E2_23 at 59.041 kb on + strand, within Pf6N2E2_23 at 59.052 kb on + strand, within Pf6N2E2_23 at 59.052 kb on + strand, within Pf6N2E2_23 at 59.053 kb on - strand, within Pf6N2E2_23
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrate 5mM remove 55,762 - -0.7 55,762 - +1.0 55,762 - +2.0 55,773 + +0.4 55,774 - +2.0 55,836 + -0.4 55,845 + +0.2 55,845 + -0.8 55,916 + -2.4 55,917 - -0.0 55,917 - -0.5 55,917 - +0.4 55,917 - -0.2 55,935 + -0.8 55,935 + +0.7 55,935 + -0.1 55,936 - +0.0 55,936 - +0.6 55,936 - +1.3 55,936 - +0.0 55,936 - +0.0 55,936 - -0.3 55,936 - +0.6 55,944 + -2.1 55,944 + -2.4 55,945 - +0.7 55,997 + -1.0 55,998 - -0.6 56,021 - -0.6 56,029 + +0.8 56,104 + +0.7 56,104 + +1.0 56,146 + -0.5 56,147 - -0.2 56,147 - -2.2 56,224 + Pf6N2E2_21 0.19 -1.3 56,224 + Pf6N2E2_21 0.19 +0.4 56,225 - Pf6N2E2_21 0.19 +0.4 56,225 - Pf6N2E2_21 0.19 -1.8 56,284 + Pf6N2E2_21 0.31 +0.6 56,284 + Pf6N2E2_21 0.31 +0.4 56,328 + Pf6N2E2_21 0.40 +0.0 56,329 - Pf6N2E2_21 0.40 +1.3 56,614 + +0.4 56,614 + +2.0 56,624 - +1.1 57,017 + Pf6N2E2_22 0.19 +0.0 57,068 + Pf6N2E2_22 0.23 -0.6 57,095 + Pf6N2E2_22 0.25 -0.3 57,096 - Pf6N2E2_22 0.25 +2.0 57,234 + Pf6N2E2_22 0.35 +0.9 57,235 - Pf6N2E2_22 0.35 -0.9 57,235 - Pf6N2E2_22 0.35 -0.8 57,238 + Pf6N2E2_22 0.36 -2.0 57,238 + Pf6N2E2_22 0.36 -0.0 57,238 + Pf6N2E2_22 0.36 +1.1 57,238 + Pf6N2E2_22 0.36 +0.4 57,239 - Pf6N2E2_22 0.36 -1.8 57,338 + Pf6N2E2_22 0.43 -0.5 57,339 - Pf6N2E2_22 0.43 -2.4 57,614 + Pf6N2E2_22 0.64 +2.0 57,614 + Pf6N2E2_22 0.64 -0.9 57,614 + Pf6N2E2_22 0.64 -0.4 57,615 - Pf6N2E2_22 0.64 +2.0 57,615 - Pf6N2E2_22 0.64 +0.4 57,615 - Pf6N2E2_22 0.64 +0.4 57,650 + Pf6N2E2_22 0.67 -0.2 57,712 + Pf6N2E2_22 0.71 +0.0 57,712 + Pf6N2E2_22 0.71 -1.2 57,713 - Pf6N2E2_22 0.71 -1.3 57,899 + Pf6N2E2_22 0.85 -0.2 57,899 + Pf6N2E2_22 0.85 +1.0 57,899 + Pf6N2E2_22 0.85 +1.0 57,899 + Pf6N2E2_22 0.85 +0.8 57,900 - Pf6N2E2_22 0.85 -3.8 57,938 + Pf6N2E2_22 0.88 -1.0 57,938 + Pf6N2E2_22 0.88 -0.6 57,938 + Pf6N2E2_22 0.88 -2.2 57,939 - Pf6N2E2_22 0.88 -3.0 57,939 - Pf6N2E2_22 0.88 +0.7 57,939 - Pf6N2E2_22 0.88 +2.0 57,939 - Pf6N2E2_22 0.88 +2.0 57,939 - Pf6N2E2_22 0.88 +0.4 57,939 - Pf6N2E2_22 0.88 +0.8 57,939 - Pf6N2E2_22 0.88 +2.0 57,980 - +2.6 58,031 + +0.0 58,031 + +0.3 58,031 + +0.4 58,032 - -0.1 58,032 - +4.2 58,092 + +0.4 58,093 - +0.5 58,094 + +1.7 58,094 + +0.1 58,095 - +2.8 58,095 - +0.0 58,129 + -0.9 58,129 + +0.1 58,130 - -2.3 58,222 + +0.2 58,277 + +0.6 58,277 + -2.4 58,277 + -0.6 58,317 + +0.6 58,317 + -1.4 58,317 + -0.6 58,317 + -0.0 58,317 + -0.0 58,317 + +0.8 58,317 + +0.7 58,318 - -0.8 58,318 - -2.6 58,318 - +0.6 58,318 - +1.1 58,318 - +0.6 58,492 + +2.0 58,610 - +0.7 58,610 - +0.0 58,630 + -0.3 58,818 - Pf6N2E2_23 0.14 +0.2 58,883 - Pf6N2E2_23 0.16 +0.8 58,883 - Pf6N2E2_23 0.16 -0.8 58,883 - Pf6N2E2_23 0.16 -0.6 58,888 + Pf6N2E2_23 0.16 +2.0 58,889 - Pf6N2E2_23 0.16 -0.0 58,889 - Pf6N2E2_23 0.16 +0.7 58,997 - Pf6N2E2_23 0.20 +1.0 59,023 + Pf6N2E2_23 0.20 +0.9 59,024 - Pf6N2E2_23 0.20 -0.5 59,041 + Pf6N2E2_23 0.21 +2.0 59,052 + Pf6N2E2_23 0.21 -3.2 59,052 + Pf6N2E2_23 0.21 +0.4 59,053 - Pf6N2E2_23 0.21 +0.7
Or see this region's nucleotide sequence