Experiment: nitrogen source nitrate 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_779 and Pf6N2E2_780 are separated by 342 nucleotides Pf6N2E2_780 and Pf6N2E2_781 are separated by 335 nucleotides
Pf6N2E2_779 - transporter, putative, at 888,692 to 889,885
_779
Pf6N2E2_780 - FIG00955564: hypothetical protein, at 890,228 to 892,219
_780
Pf6N2E2_781 - Outer membrane autotransporter barrel, at 892,555 to 894,657
_781
Position (kb) 890
891
892
893 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 889.414 kb on - strand, within Pf6N2E2_779 at 889.414 kb on - strand, within Pf6N2E2_779 at 889.764 kb on + strand, within Pf6N2E2_779 at 889.764 kb on + strand, within Pf6N2E2_779 at 889.818 kb on + strand at 889.959 kb on + strand at 889.998 kb on + strand at 890.055 kb on + strand at 890.093 kb on - strand at 890.126 kb on - strand at 890.126 kb on - strand at 890.269 kb on + strand at 890.459 kb on + strand, within Pf6N2E2_780 at 890.459 kb on + strand, within Pf6N2E2_780 at 890.459 kb on + strand, within Pf6N2E2_780 at 890.460 kb on - strand, within Pf6N2E2_780 at 890.460 kb on - strand, within Pf6N2E2_780 at 890.460 kb on - strand, within Pf6N2E2_780 at 890.501 kb on + strand, within Pf6N2E2_780 at 890.502 kb on - strand, within Pf6N2E2_780 at 890.608 kb on + strand, within Pf6N2E2_780 at 890.608 kb on + strand, within Pf6N2E2_780 at 890.622 kb on - strand, within Pf6N2E2_780 at 890.693 kb on + strand, within Pf6N2E2_780 at 890.693 kb on + strand, within Pf6N2E2_780 at 890.693 kb on + strand, within Pf6N2E2_780 at 890.693 kb on + strand, within Pf6N2E2_780 at 890.693 kb on + strand, within Pf6N2E2_780 at 890.694 kb on - strand, within Pf6N2E2_780 at 890.725 kb on + strand, within Pf6N2E2_780 at 890.725 kb on + strand, within Pf6N2E2_780 at 890.725 kb on + strand, within Pf6N2E2_780 at 890.726 kb on - strand, within Pf6N2E2_780 at 890.758 kb on + strand, within Pf6N2E2_780 at 890.793 kb on - strand, within Pf6N2E2_780 at 890.875 kb on + strand, within Pf6N2E2_780 at 890.957 kb on + strand, within Pf6N2E2_780 at 890.957 kb on + strand, within Pf6N2E2_780 at 890.957 kb on + strand, within Pf6N2E2_780 at 890.966 kb on + strand, within Pf6N2E2_780 at 890.966 kb on + strand, within Pf6N2E2_780 at 890.966 kb on + strand, within Pf6N2E2_780 at 890.967 kb on - strand, within Pf6N2E2_780 at 890.967 kb on - strand, within Pf6N2E2_780 at 891.012 kb on + strand, within Pf6N2E2_780 at 891.147 kb on - strand, within Pf6N2E2_780 at 891.170 kb on + strand, within Pf6N2E2_780 at 891.171 kb on - strand, within Pf6N2E2_780 at 891.272 kb on + strand, within Pf6N2E2_780 at 891.295 kb on + strand, within Pf6N2E2_780 at 891.299 kb on - strand at 891.306 kb on + strand, within Pf6N2E2_780 at 891.306 kb on + strand, within Pf6N2E2_780 at 891.503 kb on - strand, within Pf6N2E2_780 at 891.526 kb on + strand, within Pf6N2E2_780 at 891.526 kb on + strand, within Pf6N2E2_780 at 891.527 kb on - strand, within Pf6N2E2_780 at 891.527 kb on - strand, within Pf6N2E2_780 at 891.534 kb on - strand, within Pf6N2E2_780 at 891.569 kb on + strand, within Pf6N2E2_780 at 891.663 kb on - strand, within Pf6N2E2_780 at 891.811 kb on - strand, within Pf6N2E2_780 at 891.842 kb on + strand, within Pf6N2E2_780 at 891.843 kb on - strand, within Pf6N2E2_780 at 891.855 kb on - strand, within Pf6N2E2_780 at 891.883 kb on - strand, within Pf6N2E2_780 at 891.896 kb on + strand, within Pf6N2E2_780 at 892.044 kb on + strand at 892.052 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.077 kb on - strand at 892.077 kb on - strand at 892.077 kb on - strand at 892.077 kb on - strand at 892.077 kb on - strand at 892.124 kb on + strand at 892.124 kb on + strand at 892.124 kb on + strand at 892.125 kb on - strand at 892.130 kb on + strand at 892.130 kb on + strand at 892.130 kb on + strand at 892.130 kb on + strand at 892.131 kb on - strand at 892.131 kb on - strand at 892.131 kb on - strand at 892.131 kb on - strand at 892.131 kb on - strand at 892.137 kb on + strand at 892.137 kb on + strand at 892.137 kb on + strand at 892.137 kb on + strand at 892.137 kb on + strand at 892.137 kb on + strand at 892.138 kb on - strand at 892.138 kb on - strand at 892.153 kb on + strand at 892.153 kb on + strand at 892.191 kb on + strand at 892.191 kb on + strand at 892.192 kb on - strand at 892.192 kb on - strand at 892.192 kb on - strand at 892.232 kb on - strand at 892.280 kb on + strand at 892.331 kb on + strand at 892.331 kb on + strand at 892.331 kb on + strand at 892.331 kb on + strand at 892.332 kb on - strand at 892.332 kb on - strand at 892.335 kb on + strand at 892.335 kb on + strand at 892.335 kb on + strand at 892.336 kb on - strand at 892.349 kb on + strand at 892.356 kb on + strand at 892.371 kb on + strand at 892.374 kb on + strand at 892.374 kb on + strand at 892.374 kb on + strand at 892.375 kb on - strand at 892.375 kb on - strand at 892.420 kb on + strand at 892.451 kb on + strand at 892.452 kb on - strand at 892.475 kb on + strand at 892.482 kb on + strand at 892.483 kb on - strand at 892.483 kb on - strand at 892.483 kb on - strand at 892.484 kb on + strand at 892.521 kb on + strand at 892.551 kb on + strand at 892.552 kb on - strand at 892.552 kb on - strand at 892.603 kb on + strand at 892.617 kb on + strand at 892.688 kb on + strand at 892.689 kb on - strand at 892.689 kb on - strand at 892.740 kb on + strand at 892.743 kb on + strand at 892.743 kb on + strand at 892.744 kb on - strand at 892.744 kb on - strand at 892.785 kb on + strand, within Pf6N2E2_781 at 892.787 kb on + strand, within Pf6N2E2_781 at 893.019 kb on + strand, within Pf6N2E2_781 at 893.052 kb on - strand, within Pf6N2E2_781 at 893.196 kb on + strand, within Pf6N2E2_781 at 893.197 kb on - strand, within Pf6N2E2_781
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrate 20mM remove 889,414 - Pf6N2E2_779 0.60 -1.4 889,414 - Pf6N2E2_779 0.60 -0.8 889,764 + Pf6N2E2_779 0.90 +1.9 889,764 + Pf6N2E2_779 0.90 +1.9 889,818 + +0.9 889,959 + +1.9 889,998 + -2.1 890,055 + +2.7 890,093 - -1.6 890,126 - -0.8 890,126 - +4.2 890,269 + +1.1 890,459 + Pf6N2E2_780 0.12 -0.1 890,459 + Pf6N2E2_780 0.12 +1.9 890,459 + Pf6N2E2_780 0.12 +0.3 890,460 - Pf6N2E2_780 0.12 +0.9 890,460 - Pf6N2E2_780 0.12 -0.1 890,460 - Pf6N2E2_780 0.12 -0.9 890,501 + Pf6N2E2_780 0.14 +0.0 890,502 - Pf6N2E2_780 0.14 +1.9 890,608 + Pf6N2E2_780 0.19 -2.5 890,608 + Pf6N2E2_780 0.19 -1.2 890,622 - Pf6N2E2_780 0.20 -2.0 890,693 + Pf6N2E2_780 0.23 -0.2 890,693 + Pf6N2E2_780 0.23 -1.2 890,693 + Pf6N2E2_780 0.23 -2.2 890,693 + Pf6N2E2_780 0.23 -0.7 890,693 + Pf6N2E2_780 0.23 -1.1 890,694 - Pf6N2E2_780 0.23 -2.5 890,725 + Pf6N2E2_780 0.25 +1.9 890,725 + Pf6N2E2_780 0.25 -1.7 890,725 + Pf6N2E2_780 0.25 -1.1 890,726 - Pf6N2E2_780 0.25 -0.0 890,758 + Pf6N2E2_780 0.27 +0.6 890,793 - Pf6N2E2_780 0.28 -0.8 890,875 + Pf6N2E2_780 0.32 -2.1 890,957 + Pf6N2E2_780 0.37 +0.3 890,957 + Pf6N2E2_780 0.37 -0.7 890,957 + Pf6N2E2_780 0.37 +1.0 890,966 + Pf6N2E2_780 0.37 -2.7 890,966 + Pf6N2E2_780 0.37 +0.3 890,966 + Pf6N2E2_780 0.37 +1.9 890,967 - Pf6N2E2_780 0.37 -2.7 890,967 - Pf6N2E2_780 0.37 +1.0 891,012 + Pf6N2E2_780 0.39 -0.7 891,147 - Pf6N2E2_780 0.46 -0.5 891,170 + Pf6N2E2_780 0.47 +0.5 891,171 - Pf6N2E2_780 0.47 +1.9 891,272 + Pf6N2E2_780 0.52 +0.9 891,295 + Pf6N2E2_780 0.54 +0.4 891,299 - -0.1 891,306 + Pf6N2E2_780 0.54 -0.4 891,306 + Pf6N2E2_780 0.54 +1.9 891,503 - Pf6N2E2_780 0.64 +1.9 891,526 + Pf6N2E2_780 0.65 -1.1 891,526 + Pf6N2E2_780 0.65 +1.9 891,527 - Pf6N2E2_780 0.65 -0.1 891,527 - Pf6N2E2_780 0.65 +1.9 891,534 - Pf6N2E2_780 0.66 +0.9 891,569 + Pf6N2E2_780 0.67 -0.9 891,663 - Pf6N2E2_780 0.72 +0.9 891,811 - Pf6N2E2_780 0.79 +0.2 891,842 + Pf6N2E2_780 0.81 +1.1 891,843 - Pf6N2E2_780 0.81 -0.5 891,855 - Pf6N2E2_780 0.82 -0.4 891,883 - Pf6N2E2_780 0.83 -0.9 891,896 + Pf6N2E2_780 0.84 -0.4 892,044 + -1.7 892,052 + -2.2 892,076 + -1.6 892,076 + +1.9 892,076 + -3.4 892,076 + -0.4 892,076 + +2.9 892,076 + +0.8 892,076 + -1.7 892,076 + -1.2 892,076 + -0.2 892,076 + -2.2 892,076 + +0.0 892,076 + -2.7 892,077 - -0.1 892,077 - +0.3 892,077 - +2.2 892,077 - +1.9 892,077 - +0.5 892,124 + -1.7 892,124 + -1.3 892,124 + -2.6 892,125 - +1.9 892,130 + +1.6 892,130 + -1.2 892,130 + -0.4 892,130 + +1.2 892,131 - +0.9 892,131 - +1.9 892,131 - -1.1 892,131 - -0.4 892,131 - +1.9 892,137 + +0.1 892,137 + +0.2 892,137 + +1.9 892,137 + -0.2 892,137 + -0.7 892,137 + -1.0 892,138 - -1.6 892,138 - +1.9 892,153 + -0.7 892,153 + +1.5 892,191 + +0.4 892,191 + -0.4 892,192 - +0.3 892,192 - +1.9 892,192 - +0.6 892,232 - -2.2 892,280 + -0.4 892,331 + +0.3 892,331 + +1.9 892,331 + -2.5 892,331 + +0.7 892,332 - -0.7 892,332 - +0.3 892,335 + +1.7 892,335 + -1.9 892,335 + -1.1 892,336 - +0.9 892,349 + -0.7 892,356 + -0.1 892,371 + -0.7 892,374 + +0.3 892,374 + -0.4 892,374 + -1.8 892,375 - -0.1 892,375 - +1.8 892,420 + +1.9 892,451 + -0.1 892,452 - +0.7 892,475 + +1.9 892,482 + +1.9 892,483 - -0.4 892,483 - -0.9 892,483 - +0.1 892,484 + +0.7 892,521 + -0.3 892,551 + +1.4 892,552 - -2.4 892,552 - -1.0 892,603 + -0.6 892,617 + -2.3 892,688 + +1.9 892,689 - -0.4 892,689 - -0.4 892,740 + +1.2 892,743 + +0.3 892,743 + -0.1 892,744 - +0.7 892,744 - +0.5 892,785 + Pf6N2E2_781 0.11 +0.3 892,787 + Pf6N2E2_781 0.11 -0.6 893,019 + Pf6N2E2_781 0.22 -0.8 893,052 - Pf6N2E2_781 0.24 -0.3 893,196 + Pf6N2E2_781 0.30 -1.9 893,197 - Pf6N2E2_781 0.31 -2.2
Or see this region's nucleotide sequence